BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01140.1
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484021 jgi|Araly1|484021|fgenesh2_kg.5__13__AT2G01140.1 2170 0.0
> Ahg484021 jgi|Araly1|484021|fgenesh2_kg.5__13__AT2G01140.1
Length=1444
Score = 2170 bits (1175), Expect = 0.0
Identities = 1379/1471 (94%), Gaps = 40/1471 (3%)
Strand=Plus/Plus
Query 3 TGGTGGGAGTAGGTGATGCCAAAGTAGACGACTACTAATAGTAGT-AAACAAAACCTTTG 61
||||||||||||||||||||||||||||||||||| |||||||| ||| ||| |
Sbjct 1 TGGTGGGAGTAGGTGATGCCAAAGTAGACGACTAC--ATAGTAGTAAAAGTAAATC-GCA 57
Query 62 GCTTTA-ACACTCTCCTCCAAATCCCAGA--TCTCTCTCTGTCTC--T--GTCCCGCGGA 114
| | |||||||||||||||| ||||| ||||||||| |||| | ||||||||||
Sbjct 58 AC-AAACACACTCTCCTCCAAATTCCAGATCTCTCTCTCTCTCTCTGTGAGTCCCGCGGA 116
Query 115 GTCCCCGAGAGATTGATCACCATCACTTTTGTA-CCTTCCTTGTACTACCTATGGCGTCT 173
||||||||||||| |||||||| | | |||| | ||||||||||||||||||||||||||
Sbjct 117 GTCCCCGAGAGATCGATCACCA-C-C-TTTG-ACCCTTCCTTGTACTACCTATGGCGTCT 172
Query 174 GCTAGCTTCGTTAAGCCTAACACCCTCTCTTCTCCATGGATCGGCCAACGCTCCTTTGCT 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 GCTAGCTTCGTTAAGCCTAACACCCTCTCTTCTCCATGGATCGGCCAACGCTCCTTTGCT 232
Query 234 CACACCTCTGCTTCTTCTTCTCCTCCTCCTCGAGTCTCCTTCGCGATCCGCGCCGGTGCT 293
|||||||||| | | | ||||||||||||||||||||||||||||||||||||||
Sbjct 233 CACACCTCTG------C-T-T-CTCCTCCTCGAGTCTCCTTCGCGATCCGCGCCGGTGCT 283
Query 294 TACTCCGACGAGCTTGTTAAAACCGCCAAAAGCATTGCATCCCCTGGGAGAGGTATCTTG 353
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 284 TACTCCGACGAGCTTGTTAAAACCGCCAAAAGCGTGGCATCCCCTGGGAGAGGTATCTTG 343
Query 354 GCGATCGATGAGTCCAATGCAACCTGTGGGAAGAGGCTTGCTTCTATCGGCTTGGATAAC 413
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 344 GCGATCGATGAGTCAAATGCGACCTGTGGGAAGAGGCTCGCTTCTATCGGCTTGGATAAC 403
Query 414 ACCGAGGACAACCGTCAGGCCTACAGGCAACTTCTGCTTACCACTCCTGGCCTCGGCGAT 473
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 ACTGAGGACAACCGTCAGGCCTACAGGCAACTTCTGCTTACCACTCCTGGCCTCGGCGAT 463
Query 474 TACATCTCTGGTTCCATTCTCTTCGAGGAGACTCTTTACCAGTCCACCAAGGACGGTAAG 533
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 464 TACATCTCTGGTGCCATTCTCTTCGAGGAGACTCTTTACCAGTCCACCAAGGACGGCAAG 523
Query 534 ACCTTTGTCGATTGCTTGCGCGATGCCAACATCGTCCCTGGCATCAAAGTTGACAAGGGC 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 ACCTTTGTCGATTGCTTGCGCGATGCCAACATCGTCCCTGGCATCAAAGTTGACAAGGGC 583
Query 594 TTGTCTCCCCTAGCC-GGTTCCAACGAAGAGTCTTGGTGCCAAGGCTTGGATGGATTGGC 652
||||||||||| ||| || |||||| | ||||||||||||||||||||||||||||||||
Sbjct 584 TTGTCTCCCCT-GCCTGGCTCCAACTACGAGTCTTGGTGCCAAGGCTTGGATGGATTGGC 642
Query 653 CTCACGCTCTGCTGAGTACTACAAGCAAGGCGCTCGTTTTGCCAAGTGGAGGACAGTGGT 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 CTCACGCTCTGCTGAGTACTACAAGCAAGGCGCTCGTTTTGCCAAGTGGAGGACAGTGGT 702
Query 713 GAGTGTTCCCTGCGGTCCTTCAGCACTGGCTGTGAAGGAAGCTGCGTGGGGGCTGGCTCG 772
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 703 GAGTGTTCCTTGCGGTCCTTCAGCACTGGCTGTGAAGGAAGCTGCGTGGGGCCTGGCTCG 762
Query 773 CTATGCAGCCATCTCTCAGGATAATGGTCTTGTCCCCATTGTGGAGCCAGAGATCCTTCT 832
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 763 CTATGCAGCCATCTCTCAGGAGAATGGTCTTGTGCCCATTGTGGAGCCAGAGATCCTTCT 822
Query 833 GGACGGGGACCACCCAATAGAGAGGACTCTGGAGGTGGCAGAGAAAGTGTGGTCAGAGGT 892
||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 823 GGACGGGGACCACCCCATTGAGAGGACTCTGGAGGTGGCAGAGAAAGTGTGGTCTGAGGT 882
Query 893 GTTCTTCTACTTGGCACAGAACAACGTCATGTTTGAGGGCATTCTGTTGAAGCCGAGCAT 952
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 GTTCTTCTACTTGGCCCAGAACAACGTCATGTTTGAGGGCATTCTGTTGAAGCCGAGCAT 942
Query 953 GGTCACCCCAGGCGCTGAGCACAAGAACAAGGCCTCTCCCGAGACCGTTGCAGATTTCAC 1012
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 943 GGTCACCCCAGGGGCTGAGCACAAGAACAAGGCCTCTCCCGAGACCGTTGCAGAGTTCAC 1002
Query 1013 GCTCACCATGCTGAAAAGGAGGGTTCCTCCGGCTGTCCCAGGGATCATGTTTCTGTCAGG 1072
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1003 GCTCACCATGCTCAAAAGGAGGGTTCCTCCGGCTGTCCCAGGAATCATGTTTCTGTCTGG 1062
Query 1073 AGGACAATCAGAGGCAGAGGCCACACTGAACCTGAACGCCATGAACCAGAGCCCAAACCC 1132
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 AGGACAATCGGAGGCAGAGGCCACACTGAACCTGAACGCCATGAACCAGAGCCCAAACCC 1122
Query 1133 ATGGCATGTGTCCTTCTCATACGCACGTGCCCTGCAGAACTCCGTGCTCAGAACATGGCA 1192
|||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||
Sbjct 1123 ATGGCATGTGTCCTTCTCCTACGCACGTGCCCTGCAGAACTCCGTGCTGAGGACGTGGCA 1182
Query 1193 AGGCAAGCCGGAGAAGATTGAGGCCTCGCAGAAGGCACTGTTGGTGAGGGCAAAGGCCAA 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 AGGCAAGCCGGAGAAGATTGAGGCCTCGCAGAAGGCACTGTTGGTGAGGGCAAAGGCCAA 1242
Query 1253 CTCACTGGCCCAGCTCGGCAAATACTCAGCCGAGGGAGAGAACGAGGATGCCAAGAAAGG 1312
|||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1243 CTCATTGGCCCAGCTCGGCAAATACTCAGCAGAGGGCGAGAACGAGGATGCCAAGAAAGG 1302
Query 1313 AATGTTTGTCAAGGGTTACACCTACTGATTTGTTAATTTCAGAGATCGTAATAAGGATTA 1372
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1303 AATGTTTGTCAAGGGTTACACCTACTGATT-GTTAATTTCAAAGATCGTAATAAGGAC-- 1359
Query 1373 AGGACCATTGTTGTCttttgtttttttttcccttttttgtttt---GTCTCTGAGAAAGA 1429
|| |||||||||||||| |||||||||||||||| |||| ||||||||||||||
Sbjct 1360 ----CC-TTGTTGTCTTTTGTCTTTTTTTCCCTTTTTTTTTTTTTTGTCTCTGAGAAAGA 1414
Query 1430 AAGACAGTCACGAGTCACGATCATATCATAT 1460
| |||| ||| ||||| |||||||||||||
Sbjct 1415 A-GACACTCATGAGTCGGGATCATATCATAT 1444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57478179705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5