BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01150.1
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484022 jgi|Araly1|484022|fgenesh2_kg.5__14__AT2G01150.1 691 0.0
> Ahg484022 jgi|Araly1|484022|fgenesh2_kg.5__14__AT2G01150.1
Length=670
Score = 691 bits (374), Expect = 0.0
Identities = 613/716 (86%), Gaps = 65/716 (9%)
Strand=Plus/Plus
Query 54 AATGGGACTACAAGGTCAGCTCTCCGACGTGTCATCAGATTCGATCCCACTGATGCTACT 113
|||||||||||||||||||||||||||||| || || |||||||| || |||||||||||
Sbjct 1 AATGGGACTACAAGGTCAGCTCTCCGACGTCTCCTCGGATTCGATACCTCTGATGCTACT 60
Query 114 GGCTCTCCTCGCAACTTTCTTCAGACACGTCCGGTCTCTTCTCCTCTTCCCTTCTTCT-- 171
|||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 61 GGCTCTCCTCGCCACTTTCTTCAGGCACGTCCGGTCTCTTCTCCTCCTCCCTTCTTCTGC 120
Query 172 -GCCCCC---GTTGTTGTTG---TTACTTCAAACCTCAGCGTCCTCGCCGACCAGCTCAA 224
|||||| |||||||||| || | ||||||||||||||||||||||||||||||||
Sbjct 121 CGCCCCCGTTGTTGTTGTTGTTTTTTCCTCAAACCTCAGCGTCCTCGCCGACCAGCTCAA 180
Query 225 CCTAAATCGCCTCTTCTCGTACCGCTACTCCGACAACGCAGCCTCTGACTGCATCGTGTG 284
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 CCTAAATCGCCTCTTCTCGTACCGCTACTCCGACAACGCAGCCTCCGACTGCATCGTGTG 240
Query 285 TCTGTCTAAACTCAAGACCGGAGAAGAAGTGAGGAAGCTAGATTGCAGACACGTCTTCCA 344
|||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 241 CCTGTCTTCACTCAAGACCGGAGAACAAGTGAGGAAGCTCGATTGCAGACACGTCTTCCA 300
Query 345 TAAGCAGTGTTTGGAAGGCTGGCTTCAACATCTCAACTTCAATTGCCCGCTCTGTAGATC 404
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TAAGCAGTGTTTGGAAGGTTGGCTTCAACATCTCAACTTCAATTGCCCGCTCTGTAGATC 360
Query 405 TCCATTGCTACCTCATCATCATCAGGGA-CATGGCAGTGATGCGTCGATCTCAGCCTTCC 463
|||| ||||||||||||||||||| | |||||||||||| || |||||||||||||||
Sbjct 361 TCCACTGCTACCTCATCATCATCATC-ATCATGGCAGTGATACGGCGATCTCAGCCTTCC 419
Query 464 CTCTTCGCTCTACCTCTACTGCATCATCTCATTGATTTTTATGTgaagaaagaagaaaga 523
||||||||||| | | | | || | ||| ||| ||||||| ||||||||||||
Sbjct 420 CTCTTCGCTCT-CAT-T---G-AT--T---ATT--TTT--ATGTGAACAAAGAAGAAAGA 464
Query 524 agaaagcaagagagaagaagaTGGAGGGAGGATGCTTTTTTATTT-ATCTTCC-TTCTCC 581
| | | | |||| | |||||||||||||||||| ||||| || | | | || ||||||
Sbjct 465 A-A--G-A-GAGA-A-GAAGATGGAGGGAGGATG-TTTTTGATCTCA-CGGCCCTTCTCC 515
Query 582 TCTTTCCTTTTT--AGGAGAAGATTCTTATTTCTTACTACAGAAGATTGATTCTTCTtat 639
|||||||||||| |||| |||| | ||||||||||||| | | | | | | ||
Sbjct 516 TCTTTCCTTTTTTTAGGAAAAGAATATTATTTCTTACTA-A-A-GCT-G---CAGATTG- 567
Query 640 atatctat-atatataACCTTCTATATTTAGCTATGTTTTTGAGGAATCTCAGATCGGAA 698
|| ||| | ||||||| | |||||| | ||| |||| ||||||||||||||||||
Sbjct 568 AT-TCT-TCATATATA---T-CTATAT--A--TAT-TTTT-GAGGAATCTCAGATCGGA- 614
Query 699 GAGAGGTCCTTTTGTTTTTCAGATTTCCAC-T-C--TGTAAATTCTTAGTATGAAA 750
|||||||||||||||||||||||||||| | | | |||||||||||| |||||||
Sbjct 615 GAGAGGTCCTTTTGTTTTTCAGATTTCCGCATGCAGTGTAAATTCTTAATATGAAA 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31337037774
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5