BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01170.1
Length=1808
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484023 jgi|Araly1|484023|fgenesh2_kg.5__15__AT2G01170.1 2569 0.0
> Ahg484023 jgi|Araly1|484023|fgenesh2_kg.5__15__AT2G01170.1
Length=1718
Score = 2569 bits (1391), Expect = 0.0
Identities = 1499/1552 (97%), Gaps = 3/1552 (0%)
Strand=Plus/Plus
Query 95 TGGGCGGCGATCAATCC-T-T-TGTTCCCGTCATGGATTCCGGCCAAGTCCGCCTCAAGG 151
||||||||||||||||| | | |||||||| |||||||||||||||||||||||||||||
Sbjct 36 TGGGCGGCGATCAATCCTTCTATGTTCCCGCCATGGATTCCGGCCAAGTCCGCCTCAAGG 95
Query 152 AGCTCGGCTACAAGCAAGAGCTCAAGCGCGATCTCTCGGTCTTCTCCAATTTCGCCATCT 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 AGCTCGGCTACAAGCAAGAGCTCAAGCGCGATCTCTCGGTCTTCTCCAATTTCGCCATCT 155
Query 212 CCTTCTCCATCATATCGGTGCTCACTGGTATCACCACCACCTACAACACCGGCTTAAGAT 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 156 CCTTCTCCATCATATCGGTGCTCACTGGTATCACCACCACCTACAACACCGGCTTGAGGT 215
Query 272 TCGGCGGCACTGTCACTCTGGTCTACGGATGGTTCCTGGCCGGCTCCTTCACAATGTGCG 331
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 216 TCGGCGGCACCGTCACTCTGGTCTACGGATGGTTCCTGGCCGGCTCCTTCACAATGTGTG 275
Query 332 TTGGGTTATCTATGGCCGAGATCTGCTCCTCTTACCCTACCTCCGGTGGTCTCTACTACT 391
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 276 TTGGGTTATCGATGGCCGAGATCTGCTCCTCTTACCCTACCTCCGGCGGTCTCTACTACT 335
Query 392 GGAGTGCTATGCTCGCTGGCCCTCGTTGGGCTCCTCTTGCCTCTTGGATGACTGGCTGGT 451
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 336 GGAGTGCTATGCTCGCCGGCCCTCGTTGGGCTCCTCTTGCCTCTTGGATGACCGGCTGGT 395
Query 452 TCAACATCGTTGGTCAGTGGGCAGTGACGGCCAGCGTTGACTTCTCTCTGGCACAGTTGA 511
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 396 TCAACATCGTTGGTCAGTGGGCAGTGACGGCCAGCGTTGACTTCTCTCTCGCACAGCTGA 455
Query 512 TTCAGGTGATCGTCCTTCTCTCCACCGGCGGTAGAAACGGCGGCGGTTATAAAGGATCAG 571
||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 456 TTCAGGTCATCGTCCTTCTCTCCACCGGCGGTCGAAACGGCGGCGGATATAAAGGATCAG 515
Query 572 ACTTTGTTGTGATTGGTATCCATGGTGGGATCCTCTTCATCCACGCTCTTCTCAACAGCC 631
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 516 ACTTTGTTGTGATTGGCATCCATGGTGGGATCCTCTTCATCCATGCTCTTCTCAACAGCC 575
Query 632 TCCCCATCTCCGTCTTGTCTTTCATTGGACAGCTTGCTGCTCTTTGGAATCTCCTCGGGG 691
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 576 TCCCCATCTCCGTCTTGTCTTTCATTGGACAGCTTGCTGCTCTCTGGAATCTCCTCGGGG 635
Query 692 TTTTGGTGCTCATGATTCTGATTCCTTTGGTTTCTACGGAAAGAGCAACCACTAAGTTTG 751
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 636 TTTTGGTGCTCATGATTCTGATTCCTTTGGTTTCTACGGAAAGAGCCACCACTAAGTTTG 695
Query 752 TCTTTACCAATTTCAACACTGATAATGGCCTTGGCATCACCAGCTACGCTTACATATTCG 811
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 696 TCTTCACCAATTTCAACACTGATAATGGCCTTGGCATCACCAGCTACGCTTATATATTCG 755
Query 812 TTTTGGGACTCCTCATGAGCCAGTACACCATTACAGGGTATGATGCCTCTGCCCACATGA 871
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 756 TTTTGGGGCTCCTCATGAGCCAGTACACCATTACAGGGTATGATGCATCTGCCCACATGA 815
Query 872 CAGAAGAGACAGTCGACGCAGACAAGAACGGGCCCAGAGGAATAATCAGTGCAATTGGTA 931
|||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 816 CAGAGGAGACGGTCGACGCAGACAAGAACGGGCCAAGAGGAATAATCAGTGCAATTGGTA 875
Query 932 TATCAATTCTGTTTGGATGGGGTTATATATTGGGCATAAGCTATGCCGTCACAGACATAC 991
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 876 TATCAATTCTGTTTGGATGGGGTTACATATTAGGCATAAGCTATGCGGTCACAGACATAC 935
Query 992 CTTCTCTTCTGAGTGAGACCAACAACTCTGGTGGGTATGCCATTGCTGAGATCTTCTACT 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 CTTCTCTTCTGAGTGAGACCAACAACTCTGGTGGGTATGCCATTGCTGAGATCTTCTACT 995
Query 1052 TAGCTTTCAAGAATAGGTTTGGGAGCGGTACTGGTGGAATCGTGTGCTTAGGCGTTGTTG 1111
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 996 TAGCTTTCAAGAATCGGTTTGGGAGCGGTACTGGTGGAATCGTGTGCTTAGGTATTGTTG 1055
Query 1112 CGGTTGCTGTGTTTTTCTGTGGCATGAGCTCTGTCACCAGCAATTCCAGGATGGCGTATG 1171
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1056 CGGTTGCTGTATTTTTCTGCGGCATGAGCTCTGTCACCAGCAATTCCAGGATGGCTTATG 1115
Query 1172 CGTTTTCGAGAGATGGAGCGATGCCAATGTCGCCGTTATGGCACAAAGTGAACAGCAGAG 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 CGTTTTCGAGAGATGGAGCGATGCCAATGTCGCCGTTATGGCACAAAGTGAACAGCAGAG 1175
Query 1232 AGGTCCCCATTAATGCGGTTTGGCTCTCTGCTCTCATATCATTTTGTATGGCCCTCACCT 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1176 AGGTCCCCATTAATGCGGTTTGGCTCTCTGCTCTCATATCATTTTGTATGGCCCTTACCT 1235
Query 1292 CACTGGGGAGCATAGTGGCGTTCCAAGCAATGGTGTCGATCGCAACGATTGGACTGTACA 1351
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1236 CACTGGGGAGCATAGTGGCGTTCCAAGCAATGGTGTCGATAGCAACGATTGGACTGTACA 1295
Query 1352 TAGCATACGCAATCCCGATTATATTGAGAGTGACGCTTGCGCGCAACACCTTCGTACCTG 1411
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1296 TAGCATACGCAATCCCGATTATTTTGAGAGTGACGCTTGCTCGCAACACCTTCGTGCCTG 1355
Query 1412 GACCATTCAGCCTGGGAAAATACGGAATGGTAGTCGGGTGGGTGGCAGTCCTGTGGGTTG 1471
|||||||||||||||| || ||||||||||||||||| |||||||||||| |||||||||
Sbjct 1356 GACCATTCAGCCTGGGGAAGTACGGAATGGTAGTCGGATGGGTGGCAGTCATGTGGGTTG 1415
Query 1472 TAACCATATCAGTCCTCTTCTCCTTACCCGTGGCATATCCCATAACAGCAGAGACACTCA 1531
||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 1416 TAACCATATCAGTCCTCTTCTCCTTGCCCGTGGCATATCCCATAACCGCGGAGACACTCA 1475
Query 1532 ACTACACTCCGGTGGCAGTTGCTGGTTTGGTGGCCATAACCCTCTCATATTGGCTTTTCA 1591
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1476 ACTACACTCCGGTGGCAGTGGCTGGTTTGGTAGCCATAACCCTCTCATATTGGCTTTTCA 1535
Query 1592 GTGCCCGCCACTGGTTTACGGGTCCCATCTCCAACATTCTTAGCTGAAACAA 1643
||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1536 GTGCCCGGCACTGGTTTACGGGTCCCGTCTCCAACATTCTTAGCTGAAACAA 1587
Score = 113 bits (61), Expect = 4e-24
Identities = 93/107 (87%), Gaps = 8/107 (7%)
Strand=Plus/Plus
Query 1705 CATTCAACAAGCAACAACACATCTGTCACATTTTTATTTCATCGCCACAACTTTAAACTT 1764
||| |||| |||||| | ||||| |||||||||||||||||| ||||||| |||||||
Sbjct 1617 CATACAACTAGCAAC-A-ACATC--TCACATTTTTATTTCATCATCACAACTCTAAACTT 1672
Query 1765 TAAAGCGAATGGAAT-A-A-TAATCAACACAAAGTGTTGGCATGGGC 1808
|||| | |||||||| | | |||||||||||||||||||||||||||
Sbjct 1673 TAAACC-AATGGAATGATAATAATCAACACAAAGTGTTGGCATGGGC 1718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67876816590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5