BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01180.1
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484026 jgi|Araly1|484026|fgenesh2_kg.5__18__AT2G01180.1 1821 0.0
> Ahg484026 jgi|Araly1|484026|fgenesh2_kg.5__18__AT2G01180.1
Length=1406
Score = 1821 bits (986), Expect = 0.0
Identities = 1172/1261 (93%), Gaps = 16/1261 (1%)
Strand=Plus/Plus
Query 238 TTCACTTTCTGATGACAATAGGGTCGTTTTTCTCTTCTCTCTTATTCTGGCGCAATTCTC 297
||| ||| ||||||||||| || |||||||||||||||||| ||||||||||||||||||
Sbjct 155 TTCTCTTCCTGATGACAATTGGATCGTTTTTCTCTTCTCTCATATTCTGGCGCAATTCTC 214
Query 298 AGGACCAGGAGGCGCAGAGAGGGAGGATGCAGGAGATAGATCTTAGTGTTCACACTATAA 357
|||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||
Sbjct 215 AGGACCAGGAGGCGCAGAGAGGAAGGATTCAGGAGATAGATCTTGGAGTTCACACTATAA 274
Query 358 AGTCCCATGGAGGAAGAGTCGCTTCTAAACACAAGCACGATTGGATCATACTCGTCATCT 417
|| |||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 275 AGACCCATGGAGGCAGAGTCGCCTCTAAACACAAGCACGATTGGATTATACTCGTCATCT 334
Query 418 TGATTGCCATCGAGATAGGCTTGAACCTCATCTCTCCTTTCTACCGCTACGTGGGAAAAG 477
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 335 TGATTGCCATCGAGATCGGCTTGAACCTCATCTCTCCTTTCTACCGCTACGTGGGAAAGG 394
Query 478 ACATGATGACTGACCTCAAGTACCCTTTCAAGGACAACACCGTACCTATCTGGTCTGTCC 537
|||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 395 ACATGATGACAGACCTCAAATACCCTTTCAAGGACAACACCGTCCCGATCTGGTCTGTCC 454
Query 538 CTGTGTACGCTGTGCTTCTTCCCATCATAGTGTTCGTCTGCTTCTACCTGAAGAGGACAT 597
| |||||||| ||||||||||| || || ||||| ||||||||||||| ||||||| ||
Sbjct 455 CGGTGTACGCGGTGCTTCTTCCGGTCGTACTGTTCATCTGCTTCTACCTTAAGAGGAGAT 514
Query 598 GTGTGTACGATCTGCACCACAGCATCCTCGGGCTGCTCTTCGCCGTCTTGATAACTGGTG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 GTGTGTACGATCTGCACCACAGCATCCTCGGGCTGCTCTTCGCCGTCTTGATAACTGGTG 574
Query 658 TCATCACTGACTCCATCAAGGTAGCCACCGGACGCCCTCGTCCTAACTTCTACTGGCGCT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 TCATCACTGACTCCATCAAGGTAGCCACCGGACGCCCTCGTCCTAACTTCTACTGGCGCT 634
Query 718 GCTTCCCCGACGGCAAAGAGCTGTATGATGCGTTGGGAGGTGTGGTATGCCACGGCAAGG 777
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 635 GCTTCCCCGACGGCAAAGAGCTGTATGATGCGTTGGGAGGTGTGATATGCCACGGCAAGG 694
Query 778 CAGCTGAGGTCAAGGAAGGCCACAAGAGCTTCCCGAGCGGACACACTTCCTGGTCCTTTG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 CAGCTGAGGTCAAGGAAGGCCACAAGAGCTTCCCGAGCGGACACACTTCCTGGTCCTTTG 754
Query 838 CGGGGCTTACATTCCTTTCCCTTTACCTCTCTGGCAAAATCAAGGCCTTCAACAATGAAG 897
||||||| || ||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 755 CGGGGCTCACCTTCCTCTCCCTTTACCTCTCTGGCAAAATCAAGGCCTTCAACGGTGAAG 814
Query 898 GACATGTGGCGAAACTCTGCCTCGTGATCTTCCCTCTGCTTGCCGCTTGTCTTGTGGGGA 957
|||| ||||| || ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 815 GACACGTGGCTAAGCTCTGCCTCGTGATCTTCCCTCTGCTTGCCGCTTGCCTCGTGGGGA 874
Query 958 TATCTCGTGTGGATGACTACTGGCACCACTGGCAAGATGTCTTCGCAGGAGCTCTCATTG 1017
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 875 TATCTCGTGTGGATGACTACTGGCACCACTGGCAAGACGTCTTCGCTGGAGCTCTCATCG 934
Query 1018 GCACCCTTGTAGCCGCCTTCTGCTACCGTCAGTTCTACCCCAACCCTTACCACGAAGAAG 1077
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 935 GCATCCTTGTCGCCGCCTTCTGCTACCGTCAGTTCTACCCCAACCCTTACCACGAAGAGG 994
Query 1078 GATGGGGTCCCTACGCCTATTTCAAGGCAGCTCAAGAACGAGGAGTCCCTGTGACCTCCT 1137
|||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||
Sbjct 995 GATGGGGTCCCTACGCCTATTTCAAGGCTGCCCAAGAACGAGGAGTCCCTGTGGCCTCCT 1054
Query 1138 CCCAAAACGGAGATGCCTTGAGGGCTATGTCTCTGCAGATGGATTCAACATCTCTCGAAA 1197
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1055 CCCAGAACGGAGATGCCTTGAGGGCAATGTCTCTGCAGATGGATTCAACTTCTCTCGAAA 1114
Query 1198 ACATGGAATCTGGCACTTCCACCGCTCCCAGATGATCCTCCTCTCTTATTATTTGATTCA 1257
|||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||
Sbjct 1115 ACATGGAATCTGGCACTTCCACGGCTCCCAGATGATCCTTGTCTTTTATTATTTGATTCA 1174
Query 1258 TTATTTGGTTTTTCATTTTGATTTGGCCGTCGTCGTGAGATTGTGAATGGTGTAGCTACA 1317
|||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||
Sbjct 1175 TTATTTGGTTTTTCATTTTG----G-CCGTCGTCGTGAGATTGTGGATGGTGTAGCTACA 1229
Query 1318 T-AC-TGTAT----GTGTATTCAAAACTCTACTTGTACCATTACATTTTTGTAAATCCAC 1371
| || | ||| ||||||||||| |||||||||| || |||||||| ||||||||||
Sbjct 1230 TTACATATATATATGTGTATTCAAACCTCTACTTGTGCCCTTACATTT--GTAAATCCAC 1287
Query 1372 TCTTCATGAAATTGACGTTTT-TCTGGTGTCCGAGAGGCTTGGGTCGCTCGAATAATCTC 1430
|||||||||||||| |||||| ||||||||||||||||||||| | ||| | ||||
Sbjct 1288 TCTTCATGAAATTGGCGTTTTCTCTGGTGTCCGAGAGGCTTGGA-CATTCGCC-AGTCTC 1345
Query 1431 GTCCAATAGACTAATACGGCTCTAGTGAACACGGTATTTACATGTTTGTGATCTAAACTG 1490
||| |||||||||| |||| |||||||||||| |||||||||||| |||| |||||||||
Sbjct 1346 GTCTAATAGACTAACACGGGTCTAGTGAACACAGTATTTACATGTCTGTGGTCTAAACTG 1405
Query 1491 A 1491
|
Sbjct 1406 A 1406
Score = 130 bits (70), Expect = 3e-29
Identities = 136/165 (82%), Gaps = 15/165 (9%)
Strand=Plus/Plus
Query 55 TTCTTCTATCAAACCGTCAAGTTGGG------AAACAAAAC-AAAACTCGCAAGTTTAAC 107
|||||||||||||||||||||| ||| ||||||||| |||||| | |||||||||
Sbjct 1 TTCTTCTATCAAACCGTCAAGTGGGGAAACAAAAACAAAACAAAAACTTGGAAGTTTAAC 60
Query 108 AACGCGTCTTCTACCTCCTCCTCATCGGACTAT-TTA-TCTAT-AGTCTT-CGTTAGATC 163
|||||||||||| |||||||||| | | ||| | | || || | | || | |||
Sbjct 61 AACGCGTCTTCTCCCTCCTCCTC--CTAATTATATCAGTCCATCA-TATTAAGAGAGA-G 116
Query 164 AATTCCTCTGTTTTACTCCTAAGTTTCGAGATCCACATTTCTCTT 208
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AATTCCTCTGTTTTACTCCTAAGTTTCGAGATCCACATTTCTCTT 161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56678284560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5