BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01190.1
Length=2555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346618 jgi|Araly1|346618|fgenesh1_pg.C_scaffold_5000010 3097 0.0
> Ahg346618 jgi|Araly1|346618|fgenesh1_pg.C_scaffold_5000010
Length=2139
Score = 3097 bits (1677), Expect = 0.0
Identities = 2017/2175 (93%), Gaps = 48/2175 (2%)
Strand=Plus/Plus
Query 49 ATGGAACCACCGCCTTCTTCTCTGTCCTCCACCGCGGTGGCTTCCACCTCCATCTCCGCC 108
||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||
Sbjct 1 ATGGAACCACCGCCTTCTTCTCTTTCCTCCACCGCGGTGGCTTCCTCCTCTATCCCCGCC 60
Query 109 GCCACTGCTCCTGTTCCTCCTCCTCTACCTCCTCACGTGACTTCTTCTTACCCCGAATCT 168
|| || || |||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 61 GCAACGGCCCCTGTTCCTCCTCCTCCACCTCCTCACGTGACTTCTTCTTACCCCGACTCT 120
Query 169 CTCGACTCCTCCCCTCGTTCTCGCACCACCGATGGCTGGGATGACCTTCCTGCTCCTTCT 228
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCGACTCCTCCCCTCGTTCTCGCACCACCGATGGCTGGGATGACCTTCCTGCTCCTTC- 179
Query 229 GGCGGCGGCGGTGGCGGTGGTGGTAGCGCCGTCTCTTCTAAACTTCGTTTTATGTGTAGC 288
||||||| ||| || ||||||||||||||||||||||| ||| ||||||| |||
Sbjct 180 --CGGCGGC---GGC---GGCGGTAGCGCCGTCTCTTCTAAACTCCGTCTTATGTGCAGC 231
Query 289 TACGGCGGTCATATCCTTCCTCGCCCTCACGATAAGTCTCTCTGCTACATGGGCGGTGAC 348
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 232 TACGGCGGTCATATCCTTCCTCGCCCTCACGATAAGTCTCTCTGCTACATGGGCGGCGAC 291
Query 349 ACTCGCATCGTTGTCGTCGACCGTAACTCCTCTCTCCCTTCTCTCATCGCTCGTCTCTCC 408
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 292 ACTCGCATCGTTGTCGTCGACCGCAACTCCTCTCTCCCTTCTCTCCTCGCTCGTCTCTCC 351
Query 409 AACACGCTTCTCGACGGTCGTTCCTTCACCCTCAAGTACCAGTTACCTAGCGAAGACCTT 468
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 352 AACACGCTCCTCGACGGTCGCTCCTTCACCCTCAAGTACCAGTTACCCAGCGAAGACCTT 411
Query 469 GACTCTCTCATCTCCGTCACTACCGACGAAGATCTCGACAACATGATCGAAGAGTATGAC 528
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 412 GACTCTCTCATCTCCGTCACTACCGACGAAGATCTCGACAACATGATCGAGGAGTATGAC 471
Query 529 CGTACCATTTCCGCTTCCAATTCCACCAAACCTTCGCGTCTCCGGTTGTTTCTATTCACC 588
|||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct 472 CGTACCATCTCCGCCTCCAATTCCACCAAACCCTCGCGCCTCCGTTTGTTTCTCTTCACC 531
Query 589 TCCAAGCCTGAGGCTACTCAATCTATGGGTCAGATCCTTGAGAGCTCTGCCAAGAGCGAC 648
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 532 TCCAAGCCTGAGGCTACTCAGTCTATGGGTCAGATCCTCGAGAGCTCTGCCAAGAGCGAC 591
Query 649 GATTGGTTCCTCAACGCACTCAATAGCGCCGGTCTTCTCAATCGAGGATTCTCAGATTCT 708
||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct 592 GATTGGTTCCTCAACGCTCTCAACAGCGCTGGTCTCCTCAATCGAGGATTCTCTGATTCT 651
Query 709 GATACTAACGTCAATCGTTTACTTGGTTTGGATGATGCTCTTGCTCTCCGTTCTAATTCC 768
||| | |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 652 GATGCCAACGTCAATCGTTTACTTGGTTTGGACGATGCTCTTGCTCTCCGCTCTAATTCC 711
Query 769 GGTGACAAC-A-A-CAATCGAGATGGTGATGATGGCTCTGTTAAAAGCGCCAAGCAACAG 825
||||||||| | | |||||||||||| ||||| ||||| ||||||||||||||||| ||
Sbjct 712 GGTGACAACAACACCAATCGAGATGGAGATGACGGCTCCGTTAAAAGCGCCAAGCACCAA 771
Query 826 CAACCTCCACCGCCGCAGCAGCAAGAACAACAGCAAGGAGGCCAAGATGTGAACTGCTTA 885
| | |||| || || | || | | | ||||||||||||||||||||||||||||
Sbjct 772 C-AGATCCA--GCAGCCTCCGC-CG--C--C-GCAAGGAGGCCAAGATGTGAACTGCTTA 822
Query 886 CCGGATTCTCCGATGTTAGATACATCCTCTTCTTTCGGCTCCACTTCTTCGTCTCCCTCG 945
||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 823 CCGGATTCTCCCATGTTGGATACATCCTCTTCTTTCGGCTCTACTTCTTCCTCTCCCTCT 882
Query 946 CTCGCCAATTTGCCTCCGATCCGTGTCCATGTAGAGGAACCAGGCGGAGTAAGGACTTTG 1005
|||||||||||||| || || |||||||||||||||||||| ||||| || |||||||||
Sbjct 883 CTCGCCAATTTGCCGCCCATTCGTGTCCATGTAGAGGAACCCGGCGGGGTTAGGACTTTG 942
Query 1006 CCAGATCAGAGAAATCTGGGAATTGAAGAACAGTTCGCACGATTCAACGTCGGGAACAAG 1065
||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 943 CCAGATCAGAGAAATCTGGGAATCGAAGAACAATTCGCACGATTCAACGTTGGGAACAAG 1002
Query 1066 CATCAGCTACATGACGACGGATTTGCTGCGATCTCTTCACCACCGCCGATGCCTGTCACA 1125
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 CATCAGCTACAGGACGACGGATTTGCTGCGATCTCTTCACCACCGCCGATGCCTGTCACA 1062
Query 1126 ATCGCCCTTCCTGCTGCGCCTGTGACTGCAGCCACCGTCTCTAATGAGTTCCAGGCCAGG 1185
||||||||||||||||||||||||| ||| || |||||||| |||||||||||||| |||
Sbjct 1063 ATCGCCCTTCCTGCTGCGCCTGTGAGTGCTGCGACCGTCTCAAATGAGTTCCAGGCGAGG 1122
Query 1186 GTTTACTCAGATGACGAGAGATCCGATCACGGCGTGCAGGCTGGATACAGGAAGCCTCCG 1245
|||| ||| || |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1123 GTTTTCTCGGACGACGAGAGATCCGATCACGGCGTGCAGGCTGGATACAGAAAACCTCCG 1182
Query 1246 ACTCCGCGATCGCAGCCGCAGAATCTACCGCCTCAGCAGGCTCATCAGCTGAAATCAAAT 1305
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1183 ACTCCACGATCGCAGCCGCAGAATCTACCGCCTCAGCAGGCTCATCAGCTCAAGTCAAAT 1242
Query 1306 AGCGGTGGTGGACACGAGCTGCCATCACCCAATTCCGTTTCCAGTGATAGCAGTATGAGC 1365
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1243 AGCGGTGG---ACACGAGCTGCCATCACCAAATTCCGTTTCCAGTGATAGCAGTATGAGC 1299
Query 1366 AACCCAATGTTTCACCAAAGACCATCTGTCTATCAAGAACCAATTGCTCAGATACCTTCT 1425
||||||||||||||||||||||| |||||||||||||||||||| ||||||| || |||
Sbjct 1300 AACCCAATGTTTCACCAAAGACCTTCTGTCTATCAAGAACCAATCCCTCAGATGCCCTCT 1359
Query 1426 GGCTCTACCGTTGTTACTGGTATGATCAATCCCTCAGATCCAAGCACACTTTTGTCACAG 1485
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1360 GGCTCTACCGTAGTTACTGGTATGATCAATCCCTCAGATCCAAGCACACTTTTGTCCCAA 1419
Query 1486 CATCAGAATCAGGACCCAGCCTATATCCTTCACCCCCAGTTTGAGCAACAATCTGCACAA 1545
|||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 1420 CATCAGAATCAGGACCCAGCATACATCCTTCACCCCCAATTTGAGCAACAATCTGCACAA 1479
Query 1546 TCTCAGCCACA---GCAGCA---GTTCATACACACTGCTGCTCCTCCTC---AATACATT 1596
||||||||||| |||||| ||||||||| |||||| ||||||||| ||||||||
Sbjct 1480 TCTCAGCCACAACAGCAGCAACAGTTCATACATACTGCTCCTCCTCCTCCTCAATACATT 1539
Query 1597 CATCACCATCCGTCTAGCGGCCTTCCTGTCCCGACTTACATCCAGGTTTACCCTTCGCAA 1656
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1540 CATCACCATCCGTCTAGCGGCCTTCCTGTTCAGACTTACATCCAGGTTTACCCTTCGCAA 1599
Query 1657 CAGCCTCAACAGTCCTTCCATCAACACGCAGGTCGACTGGATCAGCAGCCTTATCCTGTT 1716
||||| || ||||||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct 1600 CAGCCGCA---GTCCTTCCACCAACACCCAGGTCGAGTGGATCAGCAGCCTTATCCTGTT 1656
Query 1717 TATTATGTCACTGCTCCTGTCCCACCTAGGCCCTACAGTATGCCTGTGCCACAATCTCCA 1776
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 TATTATGTCACTGCTCCCGTCCCACCTAGGCCCTACAGTATGCCTGTGCCACAATCTCCA 1716
Query 1777 AGTGTGAGCGATGCTGCAGGGTCTATCCCCTCTAACCATCCCAACTCTACCATGATGCCT 1836
||||||||||| ||| |||| ||| |||| | | | | | | ||||||||||||
Sbjct 1717 AGTGTGAGCGAGGCTCCAGGATCTCTCCC-T-T--C--T---AGC---ACCATGATGCCT 1764
Query 1837 CCACCTCCTAACAACCACATGAGAAGTGTTAGCAGTGGCAAACCTGAGATGGGACAGGCT 1896
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1765 CCACCTCCTAACAACCACATGAGAAGTGTTAGCGGTGGCAAACCTGAGATGGGACAGGCT 1824
Query 1897 GGGGTTTACACAACAGCCCCAGGTGTGGGCGGTGCTCAGATGGTTCACCAGATTCCCACA 1956
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1825 GGGGTTTACACAACAGCCCCAGGTGTGGGCGGTACTCAGATGGTTCACCAGATTCCAACA 1884
Query 1957 AACCAGCAGCAATTCATGGGGTATTCGCAGATCCGTCACCCTCCTCAGTCTGGTTCAGCT 2016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1885 AACCAGCAGCAATTCATGGGGTATTCGCAGATCCGTCACCCTCCTCAGTCTGGTTCAGCT 1944
Query 2017 GGGAATCCAAACTATGGATATGAATATGTCGACAATGCTCATACACAGATATACTACACT 2076
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1945 GGGAATCCAAACTATGGATATGAATACGCCGACAATGCTCATACACAGATATACTACACT 2004
Query 2077 CAACCTATGGGACATGCACAGTACCAGACAATGACTGGGCCTCCACCTGCCATGGTGATG 2136
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2005 CAACCTCTGGGACATGCACAGTACCAGACAATGACTGGGCCTCCACCTGCCATGGTGATG 2064
Query 2137 CCTGATGGTTCTGCTGCTGCTAAGCTTCCAGCTGAGAACATGACTCAACAGATCCGGAGT 2196
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2065 CCTGATGGCTCTGCTGCTGCTAAGCTTCCAGCTGAGAACATGACTCAACAGATCCGGAGT 2124
Query 2197 TCACAGCCATTGTGA 2211
|||||||||||||||
Sbjct 2125 TCACAGCCATTGTGA 2139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96330229605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5