BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01200.2
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484029 jgi|Araly1|484029|fgenesh2_kg.5__21__AT2G01200.2 1288 0.0
> Ahg484029 jgi|Araly1|484029|fgenesh2_kg.5__21__AT2G01200.2
Length=883
Score = 1288 bits (697), Expect = 0.0
Identities = 825/885 (93%), Gaps = 15/885 (2%)
Strand=Plus/Plus
Query 1 CTCTCATAAGCAACACAGAGCCT--CACTTTGAATCGAGTTGTCAATAGTCCCAGATAAT 58
|||||| |||||||||||||||| ||| ||||||||||||| |||||||| || || ||
Sbjct 1 CTCTCACAAGCAACACAGAGCCTCCCACCTTGAATCGAGTTGCCAATAGTCTCAAAT-AT 59
Query 59 ATTTCTG-CAGTGTTCACAGAGTTGAGATGTGA-CTTTGTGCATCAGAAGCATTGGCAGA 116
||||||| ||| |||||| |||||||||||||| |||||||||||||||||||||| |
Sbjct 60 ATTTCTGACAGAGTTCACTGAGTTGAGATGTGATTTTTGTGCATCAGAAGCATTGGCTGG 119
Query 117 CCTGGTTGGATTACAAGATCTGAACCAAATCTCTCTCTGTGAAATAAAAAAGCATCAATG 176
||||||||| |||||| ||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 120 CCTGGTTGGTTTACAAAATCTGAACCAAATCTCTCTCTGTTAAATAAAGAAGCATCAATG 179
Query 177 GACCCAAACACACCTGCAGACTTCTTCAAAGGTTCTTCCAAGTTTCATACATATTACTCA 236
|||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 180 GACCCAAACACAACTGCAGACTTCTTCCAAGGGTCTTCCAAGTTTCATACATATTACTCG 239
Query 237 CAGACCAAAAAGGGTGGTGGGGTAATCGATCTAGGCCTCAGCCTTAGGACCATACAACAT 296
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 240 CAGACTAAGAAGGGTGGTGGGGTAATCGATCTAGGCCTCAGCCTTAGCACCATACAACAT 299
Query 297 GAAACTTACCTCCCACCGGCGCGAATGATAGGTCTCGACGGGTATGGAGAGCTCATAGAC 356
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 GAAACTTACCTCCCACCGGCGCGAGTGATAGGTCTCGACGGGTATGGAGAGCTCATAGAC 359
Query 357 TGGT--C-GCAGCCCAGCTATA-ACAGCATTACACAGTTGAAGAGTGAGGACACTGGACA 412
|||| | |||||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 360 TGGTCGCAGCAGCCCAGCTATAGA-AGCATTACACAGTTGAAGAGTGAGGACACTGGTCA 418
Query 413 CCAAAGACTTGCCCAAGGATATTACAATAATGAAGGAGAGAGCAGAGGAAAATATGCTTA 472
| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 419 CAAAAGACTTGCCCATGGATATTACAATAATGAAGAAGAGAGCAGAGGAAAATATGCTTA 478
Query 473 CGTAAAGGTAAATCTGGATGGCCTAGTGGTAGGGCGCAAGGTTTGCCTTGTTGATCAAGG 532
||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||
Sbjct 479 TGTAAAGGTAAATCTGGATGGCCTAGTGGTAGGGCGAAAGGTTTGCCTTCTCGATCAAGG 538
Query 533 AGCTTACGCAACTCTTGCTCTTCAGCTCAATGATATGTTTGGGATGCAGACCGTGTCGGG 592
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 539 AGCTTACTCAACTCTTGCTCTTCAGCTCAATGATATGTTTGGGATGCAGACCGTGTCTGG 598
Query 593 ATTGAGGTTGTTCCAGACTGAGTCTGAGTTCTCTTTGGTCTACAGAGACAGAGAAGGCAT 652
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 599 ATTGAGGTTGTTTCAGACTGAGTCTGAGTTCTCTTTGGTCTACAGAGACAGAGAAGGTAT 658
Query 653 TTGGAGGAATGTTGGGGATGTTCCATGGAAGGAGTTTGTCGAAAGCGTGGATCGGATGCG 712
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 659 TTGGAGGAATGTTGGTGATGTTCCATGGAAGGAGTTTGTGGAAAGCGTGGATCGGATGCG 718
Query 713 AATCGCAAGAAGAAACGATGCTCTTCTTCCCTTTTAAGCTTTTAAGTCCAAGCTTCT--T 770
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
Sbjct 719 AATCGCAAGAAGAAACGATGCTCTTTTTCCCTTTTAAGCTTCAAAGTCCAAGCTTCTCCT 778
Query 771 CT---GGGGCGTTCACTGATTATCTAAGATCCAAATTAGCTCACTTGTGGTTCTATTGTT 827
|| ||||||||||||| ||||||||||||||||||| |||||||||||||||| | ||
Sbjct 779 CTTCTGGGGCGTTCACTGTTTATCTAAGATCCAAATTATCTCACTTGTGGTTCTAATATT 838
Query 828 CAATATCTGATGTAATGGAAGCTTTAAGCTATAAATACGATTATG 872
||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 839 CAACATCTGATGTAACGGAAGCTTTAAGCTATAAATACGATTATG 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32290110699
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5