BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01210.1
Length=2331
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484030 jgi|Araly1|484030|fgenesh2_kg.5__22__AT2G01210.1 3559 0.0
> Ahg484030 jgi|Araly1|484030|fgenesh2_kg.5__22__AT2G01210.1
Length=2265
Score = 3559 bits (1927), Expect = 0.0
Identities = 2134/2237 (95%), Gaps = 1/2237 (0%)
Strand=Plus/Plus
Query 76 CCAACACTCGTCTTTTTGTTCTAATTTGCATCTGATAATGTTGGCCTCGCTGATCATCTT 135
||| ||| | ||||||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 30 CCATCACAC-TCTTTTTGTTCTAATTTGCATCTGAAAATGTTTGCGTCGCTGATCATCTT 88
Query 136 CGTTGCTCTTCTCTGCAATGTGACTGTCATAAGTGGCTTAAACGACGAAGGCTTTGCGCT 195
||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct 89 CGTTGCTCTTCTCTGCAATGTGACTCTAATAAGTGGCTTAAACGACGAAGGCTTCGCGCT 148
Query 196 CTTAACGTTTAAACAAAGCGTTCACGATGATCCTACAGGTTCTCTTAACAATTGGAACTC 255
||| |||||||| || |||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct 149 CTTGACGTTTAAGCAGAGCGTTCACGATGATCCTACTGGTTCCCTTAGCAATTGGAACTC 208
Query 256 ATCAGACGAGAACGCCTGTTCGTGGAACGGTGTAACTTGCAAAGAACTCAGGGTGGTGTC 315
|||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 209 ATCAGACGAGGACGCCTGTTCGTGGAATGGTGTTACTTGCAAAGAACTCAGGGTGGTGTC 268
Query 316 TCTAAGCATTCCAAGGAAGAATCTTTACGGTTCTCTCCCTTCGTCTCTAGGGTTTCTCTC 375
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 269 TCTAAGCATTCCAAGGAAGAGCCTTTACGGTTCTCTCCCTTCGTCTCTAGGGTTTCTCTC 328
Query 376 CAGTCTCCGTCACTTGAATCTCCGGAGCAATAGGTTTTATGGGTCGTTGCCTATTCAGCT 435
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 329 CAGTCTCCGTCACTTGAAACTCCGCAGCAATAGGTTTTATGGGTCGTTGCCTATTCAGCT 388
Query 436 TTTCCATCTTCAGGGACTCCAAAGTCTAGTCCTTTACGGCAATTCCTTTGATGGGTCATT 495
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 389 TTTCCAGCTTCAGGGTCTCCAAAGTCTAGTCCTTTACGGCAATTCCTTTGATGGGTCGTT 448
Query 496 GTCGGAAGAGATCGGTAAGCTGAAGCTTCTTCAGACCTTAGATTTGTCACAGAATCTCTT 555
|||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 449 GTCGGACGAAATCGGTAAGCTTAAGCTTCTTCAGACCTTAGATTTGTCGCAGAATCTCTT 508
Query 556 CAACGGGTCGTTACCACTTTCGATTCTGCAATGCAACAGACTTAAAACACTCGATGTCAG 615
||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||
Sbjct 509 CAACGGGTCGTTACCGCTTTCGATTCTGCAATGCAACAGACTGAGAACACTCGATGTCAG 568
Query 616 CAGAAACAACTTGTCTGGTCCTTTGCCTGATGGGTTTGGCTCAGCGTTCGTCTCTCTGGA 675
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 569 CAGAAACAACTTGTCTGGTGCTTTGCCTGATGGGTTTGGCTCAGCCTTCGTCTCTCTGGA 628
Query 676 GAAACTCGACCTCGCCTTCAACCAATTCAACGGCTCCATCCCCAGCGACATTGGAAACCT 735
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 629 GAAACTCGACCTCGCCTTCAACCAATTCAACGGCTCCATCCCCAGCGACATCGGAAACCT 688
Query 736 CTCCAACCTTCAAGGAACTGCTGATTTCTCTCATAATCACTTCACCGGCTCAATCCCACC 795
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 CTCCAACCTCCAAGGAACTGCTGATTTCTCTCATAATCACTTCACCGGCTCAATCCCACC 748
Query 796 TGCCCTTGGAGATCTTCCTGAAAAGGTTTACATTGATCTCACTTTCAATAATCTCTCCGG 855
||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 749 TGCTCTGGGAGATCTTCCTGAAAAGGTTTACATTGATCTCACTTTCAACAATCTCTCCGG 808
Query 856 TCCCATTCCTCAAACCGGTGCTCTTATGAACAGAGGACCAACAGCGTTTATCGGCAACAC 915
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 809 TCCCATTCCTCAAACTGGTGCTCTGATGAACAGAGGACCAACGGCGTTTATCGGCAACAC 868
Query 916 TGGTCTATGCGGGCCTCCATTGAAGGACCTTTGCCAAGGATATCAACTTGGCCTCAATGC 975
||| |||||||| || ||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct 869 TGGGCTATGCGGCCCGCCATTGAAGGACCTTTGCCCAGGATATGAGCTTGGCCTCAATGC 928
Query 976 CTCTTACCCTTTTATCCCAAGCAACAACCCACCTGAGGATTCTGATAGTACTAACTCTGA 1035
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 929 CTCTTACCCTTTTATCCCAAGCAACAACCCACCTGAGGATTCTGATACTAGTAACTCTGA 988
Query 1036 AACCAAACAGAAATCAAGTGGTTTGAGCAAAAGCGCCGTCATTGCCATTGTTCTCTGCGA 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 AACCAAACAGAAATCAAGTGGTTTGAGCAAAAGCGCCGTCATTGCCATTGTTCTCTGCGA 1048
Query 1096 CGTGTTTGGTATCTGCCTTGTGGGTTTGCTTTTCACTTACTGCTACTCAAAGTTCTGCGC 1155
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1049 CGTTTTTGGTATCTGCCTTGTGGGTTTGCTTTTCACTTACTGCTACTCAAAGTTGTGCGC 1108
Query 1156 TTGTAACCGCGAGAACCAATTCGGAGTCGAGAAAGAATCCAAGAAAAGGGCTTCTGAGTG 1215
|||||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||
Sbjct 1109 TTGTAACCGCGAGAACCAGTTCGGATTCGAGAAAGAATCCAAGAAAAGGGCTGCAGAGTG 1168
Query 1216 TCTGTGTTTCCGTAAAGACGAATCCGAAACGCCATCTGAAAACGTGGAGCATTGCGACAT 1275
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 TCTTTGTTTCCGTAAAGACGAATCCGAAACGCCATCTGAAAACGTGGAGCATTGCGACAT 1228
Query 1276 TGTTCCCCTCGACGCTCAGGTTGCGTTTAACCTGGAGGAGCTGCTAAAGGCGTCAGCTTT 1335
|||| |||| ||||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct 1229 TGTTGCCCTTGACGCTCTGGTTGCGTTTAACCTGGAGGAGCTGCTAAAGGCCTCGGCTTT 1288
Query 1336 CGTTCTGGGGAAGAGCGGAATCGGAATTGTCTACAAAGTGGTTCTAGAGAACGGGCTCAC 1395
||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1289 CGTTCTGGGCAAGAGCGGAATCGGCATTGTGTACAAAGTGGTTCTCGAGAACGGGCTCAC 1348
Query 1396 ACTGGCCGTACGGAGATTGGGTGAAGGAGGGTCTCAGAGATTCAAGGAGTTTCAGACAGA 1455
||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1349 ACTGGCCGTCCGGAGATTGGGTGAAGGAGGATCTCAGAGATTCAAGGAATTTCAGACAGA 1408
Query 1456 AGTTGAAGCCATAGGGAAACTAAAACATCCTAACATTGCTAGTCTTCGAGCTTATTATTG 1515
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1409 AGTTGAAGCCATAGGGAAAATACGACATCCTAACATTGCTAGTCTTCGAGCTTATTATTG 1468
Query 1516 GTCTGTCGATGAAAAGCTTCTCATCTACGACTATGTTTCCAACGGTAACCTCGCAACCGC 1575
|||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1469 GTCTGTGGATGAGAAGCTTCTCATCTACGACTATGTTCCCAACGGTAACCTTGCAACCGC 1528
Query 1576 CCTCCACGGAAAGCCGGGGATGATGACCATCGCTCCGTTGACATGGTCTGAACGGTTGAG 1635
|||||||||||||| ||||||| |||| | |||||||||||||||||||||||| ||||
Sbjct 1529 CCTCCACGGAAAGCTGGGGATGGTGACTGTAGCTCCGTTGACATGGTCTGAACGGCTGAG 1588
Query 1636 GATAATGAAAGGGATTGCTACAGGGCTTGTTTATCTGCATGAGTTTAGTCCCAAGAAATA 1695
|||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1589 GATAGTGAAAGGGATTGCGACAGGGCTTGTTTATCTGCACGAGTTTAGTCCCAAGAAATA 1648
Query 1696 CGTCCATGGAGATCTCAAGCCAAGCAACATTCTCATTGGACAGGACATGGAACCTAAGAT 1755
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1649 CGTCCATGGAGATCTCAAGCCCAGCAACATTCTTATTGGACAGGACATGGAACCTAAGAT 1708
Query 1756 CTCAGATTTTGGACTAGCACGGTTAGCTAACATCGCTGGAGGATCTTCTCCGACCATACA 1815
||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1709 CTCTGATTTTGGACTAGCACGGTTGGCTAACATTGCTGGAGGATCTTCTCCGACCATACA 1768
Query 1816 GTCTAACAGAATCATCCAAACGGATCAACAGCCGCAAGAGAGGCAACAACACCATCACAA 1875
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1769 GTCTAACAGAATCATCCAAACGGATCAACAGCCGCAAGAGAGGCAACAGCACCATCACAA 1828
Query 1876 GAGCGTATCTTCGGAGTTCACTGCTCACTCTTCTTCTGGATCCTACTATCAAGCACCTGA 1935
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1829 GAGCGTATCTTCGGAGTTCACTGCTCACTCTTCGTCTGGATCCTACTATCAAGCACCTGA 1888
Query 1936 GACTCTCAAGATGGTAAAACCTTCACAGAAGTGGGATGTTTACTCTTATGGGATCATTTT 1995
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1889 GACTCTCAAGATGGTAAAACCGTCACAGAAGTGGGATGTTTACTCTTATGGGATCATTTT 1948
Query 1996 ACTGGAATTGATAGCGGGTAGGTCTCCCGCAGTGGAGGTGGGGACATCGGAAATGGATCT 2055
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1949 ACTGGAATTGATAGCGGGTAGGTCTCCAGCAGTGGAGGTGGGGACATCGGAAATGGATCT 2008
Query 2056 AGTGCGGTGGGTACAGGTATGCATTGAGGAGAAGAAACCATTGTGTGATGTTCTTGATCC 2115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2009 AGTGCGGTGGGTACAGGTATGCATTGAGGAGAAGAAACCATTGTGTGATGTTCTTGATCC 2068
Query 2116 TTGTTTGGCTCCTGAGGCAGAGACGGAAGACGAGATTGTTGCTGTTCTTAAGATTGCAAT 2175
||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 2069 TTGTTTGGCTCCTGAGGCAGATAAGGAAGACGAGATTGTCGCTGTTCTTAAGATTGCAAT 2128
Query 2176 CAGTTGCGTGAATAGCAGTCCAGAGAAAAGGCCTACCATGAGGCACGTTTCTGATACGCT 2235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2129 CAGTTGCGTGAATAGCAGTCCAGAGAAAAGGCCTACCATGAGGCACGTTTCTGATACTCT 2188
Query 2236 CGACAGATTACCCGTGGCCGGCGATTGAGACATCTAGAGATTGCACATAAAGCTTGTTTT 2295
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2189 TGACAGATTACCCGTGGCCGGCGATTGAGAGATCTAGAGATTGCACATAAAGCTTGTTTT 2248
Query 2296 GAAATTTGAAGCTGCAA 2312
||| |||||||||||
Sbjct 2249 AAAAGATGAAGCTGCAA 2265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87798014725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5