BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01220.2
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484032 jgi|Araly1|484032|fgenesh2_kg.5__24__AT2G01220.2 2078 0.0
Ahg484550 jgi|Araly1|484550|fgenesh2_kg.5__542__AT3G27610.1 1323 0.0
> Ahg484032 jgi|Araly1|484032|fgenesh2_kg.5__24__AT2G01220.2
Length=1414
Score = 2078 bits (1125), Expect = 0.0
Identities = 1338/1437 (93%), Gaps = 29/1437 (2%)
Strand=Plus/Plus
Query 15 CGAGAGAAACAATGGGAGACGCTGCGATCCGTACCGTCGTCGAAGCCATTCACTCATCTC 74
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 CGAGAGAAACAATGGGAGAGGCTGCGATCCGTACCATCGTCGAAGCCATTCACTCATCTC 60
Query 75 CGACGCAGGCCGTCGTCTATCTTTGCGGCGGTGCCTCTCTGGCTTTAGGTTGGTTGATGT 134
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 61 CGACGCAGGCCGTCGTCTACCTTTCCGGCGGTGCCTCTCTGGCTTTAGGTTGGTTGATGT 120
Query 135 CGGTTCCTGGAGCGTCGAACACGCTTCTCG-AGTCCGTGGTTCCTTATTCGAGAGTATCT 193
||||||||||||| || ||||||||||||| || |||||||||||||||| ||||| |||
Sbjct 121 CGGTTCCTGGAGCTTCCAACACGCTTCTCGAAG-CCGTGGTTCCTTATTCCAGAGTTTCT 179
Query 194 ATGGTTCAATTACTCGGCAGGGTTCCGAGCCAACACTGTAGCCAAGCATTGGCCAAGGAG 253
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 ATGGTCCAATTACTCGGCAGGGTTCCGAGCCAACACTGTAGCCAAGCAATGGCCAAGGAG 239
Query 254 ATGGCCTTGTTAGCCTACAATCGGGCGCTTAAGCTCTCTAAACCAGGATATCCGGTTCTC 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATGGCCTTGTTAGCCTACAATCGGGCGCTTAAGCTCTCTAAACCAGGATATCCGGTTCTC 299
Query 314 GGTGTCGGGTTTACGGGATCATTGGTAACTTCTCGTCCTAAGCGTGGAGATCACAGGTTC 373
||| |||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 300 GGTCTCGGTTTTACGGGATCATTGGCAACTTCTCGTCCTAAGCGTGGGGATCACAGGTTC 359
Query 374 TTTTTGTCTATGAGAGCATCCGACCGGATTTTGGAATCTTCAGTCACTCTAACTAAGAAC 433
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 360 TTTTTGTCTATGAGAGCATCCAACCGGATTTGGGAATCTTCAGTCACTCTAACTAAGAAC 419
Query 434 TTACGGAGCCGAGAAGAAGAAGATAAGGTGTCAAGCTGTGCACTGATCCAGGCTATGGCC 493
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 420 TTACGCAGCCGAGAAGAAGAAGATAAGGTGTCAAGTTGTGCACTGATCCAGGCTATGGCC 479
Query 494 AAGGCATGCCAAGTTTCTGGGACACTTGACTCTGGCTTGACCGAGTCTGAGGTGCCTTAT 553
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAAGCATGCCAAGTTTCTGGGACACTTGACTCTGGCTTGACCGAGTCTGAGGTGCCTTAT 539
Query 554 GAGTCTGAAACCCACTTTACTGAAGAACAAGAACTAGAGCAGCTTATAAATGGGCACTTG 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAGTCTGAAACCCACTTTACTGAAGAACAAGAACTAGAGCAGCTTATAAATGGGCACTTG 599
Query 614 TGCTGTAAGATTTATCCATTTTCTGGGGAAGCACACGGGTCTGATGAAGACAGAAAGATT 673
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 600 ACCTGTAAGATTTATCCATTTTCTGGGGAAGCACATGGGTCTGATGAAGATAGAAAGATT 659
Query 674 ATACTACCTGGCTCTTTTAACCCATTACATGAAGGTCATCTCAAGCTGTTAGAAGTTGCT 733
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 660 ATACTTCCTGGCTCTTTTAACCCATTACATGAAGGTCATCTCAAGCTATTAGAAGTTGCT 719
Query 734 ATGAGTGTTTGTGGGGGCGGCTACCCATGTTTTGAAATATCCGCAATAAATGCCGACAAA 793
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTGAGGGTTTGTGGGGGCGGGTACCCATGTTTTGAAATATCCGCAATAAATGCCGACAAA 779
Query 794 CCACCGCTTACAATTGCACAGATTAAAGATCGTGTCAAGCAATTTGAAGTAGTTGGAAAG 853
||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 780 CCACCGCTTTCAGTTGCACAGATTAAAGATCGTGTCAAGCAATTTGAAGCAGTTGGAAAG 839
Query 854 ACGATAATAGTTTCAAATCAGCCATACTTCTACAAGAAAGCTGAACTCTTCCCAGGAAGC 913
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACAATTATAGTTTCAAATCAGCCATACTTCTACAAGAAAGCTGAACTCTTCCCAGGAAGC 899
Query 914 AGTTTTGTAATTGGCGCTGACACTGCAGCGAGGCTTGTCAATCCAAAGTACTATGAAGGA 973
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 900 AGTTTTGTAATTGGCGCTGACACTGCAGCGAGGCTTGTCGATCTAAAGTACTATGAAGGA 959
Query 974 AGC-ATCAAAAGGATGTTGGAGATACTTGGTGATTGCAAACGGACAGGTTGCACTTTCCT 1032
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AGCTA-CAAAAGGATGTTGGAGATACTTGGTGATTGCAAACGGACAGGTTGCACTTTCCT 1018
Query 1033 TGTTGGTGGCCGCAATGTAGATGGTGTATTTAAGGTTCTTGAAGATGTTGATATTCCAGA 1092
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1019 TGTTGGTGGCCGCAATGTAGATGGTGTATTTAAGGTTCTTGAAGATCTTGATATTCCGGA 1078
Query 1093 GGAAATAATCGACATGTTTATTTCAATTCCAGCAGATATATTCCGGATGGATATATCCTC 1152
|||||| |||||||||||||| |||||||||||||||| |||| ||||||||||||||||
Sbjct 1079 GGAAATCATCGACATGTTTATCTCAATTCCAGCAGATAAATTCAGGATGGATATATCCTC 1138
Query 1153 TACAGAGATAAGaaaaaaaCAAGGGGGTGGTACGAACTAATGACT-TCTCAACCCGCTTG 1211
|||||||||||||||||| ||||||||| |||||| ||||||| | ||||||||| ||
Sbjct 1139 TACAGAGATAAGAAAAAACCAAGGGGGTATTACGAAGTAATGACCGT-TCAACCCGCATG 1197
Query 1212 AAAGTCTTGGCTCGCAAGACAATTTATTTAGTGCAGTTACTTTTTGATTTGATATGTATT 1271
|| |||||||||||||||||||||| |||||||||||| ||||||||| |||| ||||||
Sbjct 1198 AATGTCTTGGCTCGCAAGACAATTTCTTTAGTGCAGTTGCTTTTTGATATGATCTGTATT 1257
Query 1272 GTGTTGCAT-TC-TGTTCTTATTATGGAATCCGGATCAATGGTATGAGCATTTGCACATG 1329
||| | || || ||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 1258 GTGGT-CAGGTCGTGTGGACATAATG-AATCCGGATCAATGGTATGAGCATTTGCACATG 1315
Query 1330 ACATCGAAAGAGCATTGCA-GAGTTGCATGGGAAACGTTTAAAGAGTGCGAATATTTGTG 1388
|| || || | | | | ||| | |||| || |||| |||||||| ||||||
Sbjct 1316 -CA--GAGTT-GCCTGGGAAGCGTT--A----AAAC-TTAAAAGTGTGCGAATGTTTGTG 1364
Query 1389 AATTGTGACAGAGAAGCCTTGTTAAATATTTATGAATGTGAGCTGATTAGAATCTGT 1445
|||||||||||||||||||||||| ||||||| || | |||||||||||||||
Sbjct 1365 AATTGTGACAGAGAAGCCTTGTTAGATATTTA-GA--G----CTGATTAGAATCTGT 1414
> Ahg484550 jgi|Araly1|484550|fgenesh2_kg.5__542__AT3G27610.1
Length=1247
Score = 1323 bits (716), Expect = 0.0
Identities = 1018/1164 (87%), Gaps = 19/1164 (2%)
Strand=Plus/Plus
Query 15 CGAGAGAAACAATGGGAGACGCTGCGATCCGTACCGTCGTCGAAGCCATTCACTCATCTC 74
||||||||||||||| |||| |||||||||| ||| |||||||| | ||||||||||| |
Sbjct 28 CGAGAGAAACAATGGCAGACTCTGCGATCCGAACCATCGTCGAATCAATTCACTCATCAC 87
Query 75 CGACGCAGGCCGTCGTCTATCTTTGCGGCGGTGCCTCTCTGGCTTTAGGTTGGTTGATGT 134
||||||| |||||||| ||||||| |||||||||||||| | ||||||||||||| ||||
Sbjct 88 CGACGCAAGCCGTCGTGTATCTTTCCGGCGGTGCCTCTCAGTCTTTAGGTTGGTTAATGT 147
Query 135 CGGTTCCTGGAGCGTCGAACACGCTTCTCG-AGTCCGTGGTTCCTTATTCGA-GAGTATC 192
| ||||||||||| |||||||| ||||| | || |||||||||| ||||| | || | ||
Sbjct 148 CAGTTCCTGGAGCTTCGAACACACTTCTTGAAG-CCGTGGTTCCATATTCCATGA-TCTC 205
Query 193 TATGGTTCAATTACTCGGCAGGGTTCCGAGCCAACACTGTAGCCAAGCATTGGCCAAGGA 252
|||||||||||||||||| |||||||||| |||||||||||||||| || |||| || ||
Sbjct 206 TATGGTTCAATTACTCGGAAGGGTTCCGAACCAACACTGTAGCCAATCAATGGCGAATGA 265
Query 253 GATGGCCTTGTTAGCCTACAATCGGGCGCTTAAGCTCTCTAAACCAGGATATCCGGTTCT 312
||||| |||||||| || |||||||| |||||||| ||||||||||||| | |||||||
Sbjct 266 AATGGCTTTGTTAGCTTATAATCGGGCTCTTAAGCTTTCTAAACCAGGATGTGCGGTTCT 325
Query 313 CGGTGTCGGGTTTACGGGATCATTGGTAACTTCTCGTCCTAAGCGTGGAGATCACAGGTT 372
|||||||| ||||||||| |||| | |||||||||||| |||||||| ||||| |||||
Sbjct 326 TGGTGTCGGTTTTACGGGAACATTAGCAACTTCTCGTCCAAAGCGTGGGGATCATAGGTT 385
Query 373 CTTTTTGTCTATGAGAGCATCCGACCGGATTTTGGAATCTTCAGTCACTCTAACTAA--G 430
||||||||| || ||||||||||||||| | | |||| ||||||| |||||||| || |
Sbjct 386 CTTTTTGTCGATAAGAGCATCCGACCGGGTATGGGAAACTTCAGTTACTCTAACAAAGGG 445
Query 431 AACTTACGGAGCCGAGAAGAAGAAGATAAGGTGTCAAGCTGTGCACTGATCCAGGCTATG 490
|| ||| |||||||| ||||||||||| ||| ||||||||| |||||| |||||||||
Sbjct 446 AA--AACGAAGCCGAGAGGAAGAAGATAAAGTGGCAAGCTGTGTACTGATACAGGCTATG 503
Query 491 GCCAAGGCATGCCAAGTTTCTGGGACACTTGACTCTGGCTTGACCGAGTCTGAGGTGCCT 550
||||| |||||||||||||||| ||| ||||||||||||||||| |||||||||||| ||
Sbjct 504 GCCAAAGCATGCCAAGTTTCTGAGACCCTTGACTCTGGCTTGACTGAGTCTGAGGTG-CT 562
Query 551 T-ATGAGTCTGAAACCCACTTTACTGAAGAACAAGAACTAGAGCAGCTTATAAATGGGCA 609
| |||||||||||||||| |||| ||||||| |||||||||||||||||||| |||| ||
Sbjct 563 TAATGAGTCTGAAACCCAGTTTAGTGAAGAAGAAGAACTAGAGCAGCTTATAGATGGACA 622
Query 610 CTTGTGCTGTAAGATTTATCCATTTTCT---GGGGAAGCACACGGGTCTGATGAAGACAG 666
||||||| ||||||||||||||||||| | ||| || | || || ||| |||| ||
Sbjct 623 ATTGTGCTCTAAGATTTATCCATTTTCTAAAGCAGAATCATATGGATCGGATAAAGATAG 682
Query 667 AAAGATTATACTACCTGGCTCTTTTAACCCATTACATGAAGGTCATCTCAAGCTGTTAGA 726
|||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 683 AAAGATTATACTGCCTGGTTCTTTTAACCCGTTACATGAGGGTCATCTCAAGCTGTTGGA 742
Query 727 AGTTGCTATGAGTGTTTGTGGGGGCGGCTACCCATGTTTTGAAATATCCGCAATAAATGC 786
|| |||| |||||||| ||| || || |||||||||||||||||||||||| |||||||
Sbjct 743 AGCTGCTCTGAGTGTTAGTGAAGGAGGGTACCCATGTTTTGAAATATCCGCAGTAAATGC 802
Query 787 CGACAAACCA-CCGCTTACAATTGCACAGATTAAAGATCGTGTCAAGCAATTTGAAGTAG 845
||||||||| || |||||| ||||| | ||||||||||| ||||||||||||||||||
Sbjct 803 AGACAAACCATCC-CTTACAGTTGCAGAAATTAAAGATCGCGTCAAGCAATTTGAAGTAC 861
Query 846 TTGGAAAGACGATAATAGTTTCAAATCAGCCATACTTCTACAAGAAAGCTGAACTCTTCC 905
||| ||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 862 TTGAAAAGACGGTAATAGTTTCAAATCAGCCATTCTTTTACAAGAAAGCTGAACTCTTCC 921
Query 906 CAGGAAGCAGTTTTGTAATTGGCGCTGACACTGCAGCGAGGCTTGTCAATCCAAAGTACT 965
||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||||
Sbjct 922 CAGGAAGCAGTTTTGTAATCGGTGCTGACACTGCAGCAAGGCTTGTTAATCCAAAGTACT 981
Query 966 ATGAAGGAAGC-ATCAAAAGGATGTTGGAGATACTTGGTGATTGCAAACGGACAGGTTGC 1024
||||||||||| | |||||||||||||||| |||| ||||| |||||||| |||||||||
Sbjct 982 ATGAAGGAAGCCA-CAAAAGGATGTTGGAGGTACTAGGTGACTGCAAACGAACAGGTTGC 1040
Query 1025 ACTTTCCTTGTTGGTGGCCGCAATGTAGATGGTGTATTTAAGGTTCTTGAAGATGTTGAT 1084
| ||||||||||||||||| ||||||||||||| |||||||||||| || ||| ||||
Sbjct 1041 AAGTTCCTTGTTGGTGGCCGTAATGTAGATGGTGAATTTAAGGTTCTCGACGATATTGAC 1100
Query 1085 ATTCCAGAGGAAATAATC-GACATGTTTATTTCAATTCCAGCAGATATATTCCGGATGGA 1143
|||||||| ||||||| | | ||||||| ||||||||||| || | |||||| |||||
Sbjct 1101 ATTCCAGATGAAATAAGCAGT-ATGTTTACCTCAATTCCAGCGGAAACATTCCGAATGGA 1159
Query 1144 TATATCCTCTACAGAGATAAGaaa 1167
|||||||||||| ||| |||||||
Sbjct 1160 TATATCCTCTACTGAGCTAAGAAA 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54050057655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5