BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G01240.1

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484033 jgi|Araly1|484033|fgenesh2_kg.5__25__AT2G01240.1           684    0.0  


> Ahg484033 jgi|Araly1|484033|fgenesh2_kg.5__25__AT2G01240.1
Length=486

 Score =  684 bits (370),  Expect = 0.0
 Identities = 449/487 (92%), Gaps = 5/487 (1%)
 Strand=Plus/Plus

Query  1    ATGTCTGTGGAAGGACAAGATAAACTCAGGGATAACACTTGTAATGGCCACACTCTTCTG  60
            ||||| ||||||||||| ||||||||| |||||||||||||||| ||||||||| |||||
Sbjct  1    ATGTCAGTGGAAGGACAGGATAAACTCGGGGATAACACTTGTAACGGCCACACTTTTCTG  60

Query  61   GTTCCTCTTGGAGTTCATGGAAGCTCGATTAGTTCCGCTTCTCTGCTCAATCTTGTTACT  120
            ||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct  61   GTTCCTCTTAGAGATCATGGAGGCTCGATTTGTTCCGCTTCTCTGCTCAATCTTGTTACT  120

Query  121  CCTCATGCTCATTCTCTTCCTTTGGGCCAATTAAATCAACCAGATTCCCCACTTAAAGCC  180
            |||||||||| | || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct  121  CCTCATGCTCCTCCTTTTCCTTTGGGCCAACTAAATCAACCAGATTCCCCACTTAAAGCC  180

Query  181  TTGTTTTCAATGATGGAGGGGCATCTCCTCATGCTCTATGAGATTGCATATGGGAAAGAC  240
            ||||||| || ||||||||| |||||||| ||| | ||||||||||||||||||||||||
Sbjct  181  TTGTTTTTAAAGATGGAGGGCCATCTCCTTATGATGTATGAGATTGCATATGGGAAAGAC  240

Query  241  AACAAAACATTTCTAAAGACCATCCTTTATGTGGCCATCATATACAACATTGGGAGCTAC  300
            |||||||| ||||| |||||||||||||||||| ||| |||| ||| |||||||||||||
Sbjct  241  AACAAAACCTTTCTTAAGACCATCCTTTATGTGACCACCATACACATCATTGGGAGCTAC  300

Query  301  ATCAGCCTCCTCACAATTTTGTATATATGCTTGGTTTGCTCGATGACAATCCCGGTTGTT  360
            |||||||||||||||||||||||||||||||| || ||||||||||| || |||||| ||
Sbjct  301  ATCAGCCTCCTCACAATTTTGTATATATGCTTAGTCTGCTCGATGACGATTCCGGTT-TT  359

Query  361  -TACATGCAATTTCAAGAGCTCATTGACAGTTTCATGGGGAAAGTATCAGAAGAGAAGAA  419
             |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct  360  GTACATGCAATTTCAAGAGGTCATTGACAGTTTCATGGGGAAGGTATCAGAAGAGAAGGA  419

Query  420  CAATTTACTTGAAGTATTCAAA-C-AA-GTTGTCTCTAAAATTCCTAGGGCCCCCAAGGT  476
            ||| |||||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct  420  CAAGTTACTTGAAGTATTCAAAACCAAAGTTGTCTCTAAAATTCCTAGGGCCCCCAAGGT  479

Query  477  GGAGTAG  483
            |||||||
Sbjct  480  GGAGTAG  486



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17513415351


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5