BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01250.1
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322471 jgi|Araly1|322471|fgenesh1_pm.C_scaffold_5000015 1208 0.0
Ahg497533 jgi|Araly1|497533|fgenesh2_kg.788__1__AT2G44120.1 612 2e-174
Ahg483534 jgi|Araly1|483534|fgenesh2_kg.4__2594__AT2G44120.2 606 9e-173
Ahg478749 jgi|Araly1|478749|fgenesh2_kg.3__1450__AT3G13580.2 575 2e-163
> Ahg322471 jgi|Araly1|322471|fgenesh1_pm.C_scaffold_5000015
Length=729
Score = 1208 bits (654), Expect = 0.0
Identities = 704/729 (97%), Gaps = 0/729 (0%)
Strand=Plus/Plus
Query 107 ATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAGAAGAGGAAGAGAGAGGAG 166
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1 ATGGTTGAGTCAAAGGTTGTAGTTCCGGAGTCGGTGTTGAAGAAGCGGAAGAGAGAGGAA 60
Query 167 GAATGGGCTTTGGAGAAGAAGCAGAATGTTGAAGCCGCCAAGAAGAAGAACGCCGAGAAC 226
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 61 GAATGGGCTTTGGAGAAGAAGCAGAATGCTGAAGCCGCCAAGAAGAAGAACGCAGAGAAC 120
Query 227 AGGAAGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCCGAGAAGGAGAAG 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGGAAGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCCGAGAAGGAGAAG 180
Query 287 GAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCTATGTTGACCCTGAA 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCTATGTTGACCCTGAA 240
Query 347 GCTAAGCTCTTGTTCATCATCCGTATCCGTGGTATCAATGCCATTGACCCTAAGACTAAG 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GCTAAGCTCTTGTTCATCATCCGTATCCGTGGTATCAATGCCATTGACCCTAAGACCAAG 300
Query 407 AAGATTCTCCAGCTCTTGCGTTTGAGACAGATTTTCAATGGTGTTTTCCTTAAAGTCAAC 466
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGATTCTCCAGCTTTTGCGTTTGAGACAGATTTTCAATGGTGTTTTCCTTAAAGTCAAC 360
Query 467 AAGGCTACGATGAACATGCTTCGCCGTGTTGAGCCCTATGTCACTTACGGATTCCCTAAC 526
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 AAGGCTACAATGAACATGCTTCGCCGTGTTGAGCCCTATGTCACTTACGGATACCCTAAC 420
Query 527 TTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGAAAGCTTAACCACCAGAGG 586
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 421 TTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTATGGCAAGCTAAACCACCAGAGG 480
Query 587 ATAGCTTTGACTGACAACTCTATTGTAGAGCAGGCTCTTGGAAAGCATGGTATCATTTGC 646
| |||||||||||||||||||| || ||||||||||| ||||||||||| ||||| |||
Sbjct 481 GTGGCTTTGACTGACAACTCTATCGTTGAGCAGGCTCTAGGAAAGCATGGGATCATCTGC 540
Query 647 ACTGAGGATTTGATCCACGAGATTCTAACAGTAGGACCTCATTTCAAGGAAGCCAACAAC 706
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 ACTGAGGATTTGATCCACGAGATTCTAACAGTAGGACCTCATTTCAAGGAAGCTAACAAC 600
Query 707 TTCCTTTGGCCATTCCAGCTTAAGGCACCACTAGGTGGCCTCAAGAAGAAGAGAAATCAC 766
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 601 TTCCTTTGGCCATTCCAGCTCAAGGCACCTCTCGGTGGCCTCAAGAAGAAGAGAAATCAC 660
Query 767 TACGTGGAAGGTGGTGATGCCGGAAACCGTGAGAACTTCATCAATGAGCTTATCAGGAGG 826
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 661 TACGTGGAAGGTGGTGATGCTGGAAACCGTGAGAACTTCATCAATGAGCTTGTCAGGAGG 720
Query 827 ATGAATTAG 835
|||||||||
Sbjct 721 ATGAATTAG 729
> Ahg497533 jgi|Araly1|497533|fgenesh2_kg.788__1__AT2G44120.1
Length=949
Score = 612 bits (331), Expect = 2e-174
Identities = 616/749 (82%), Gaps = 38/749 (5%)
Strand=Plus/Plus
Query 104 GAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAGAAGAGGAAGAGAG-A 162
||||||| ||| || ||||| || || |||||||| || || || |||| ||||| | |
Sbjct 120 GAAATGGCTGAATCCAAGGTAGTGGTACCAGAGTCTGTATTAAAAAAGATCAAGAG-GCA 178
Query 163 GGAGGAATGGGCTTTGGAGAAG-AAGCA-G-AA-TGTTGAAGCCGCCAAGAAGAAGAACG 218
||||||||||| |||| ||| ||| | | || |||| || || |||||||||| |
Sbjct 179 AGAGGAATGGGCATTGGCCAAGAAAG-AGGAAACTGTT---GCTGCTAAGAAGAAGAGTG 234
Query 219 CCGAGAACAGGAAGCTTATCTTCAAAAGAGCCGAGCAATACT-CCAAGGAATATGCCGAG 277
|||| | | ||||| |||||||| ||||| ||||| || | |||| ||||| || |||
Sbjct 235 TTGAGACCCGCAAGCTCATCTTCAAGAGAGCTGAGCAGTA-TGCCAAAGAATACGCTGAG 293
Query 278 AAGGAGAAGGAGTTGATCTCG-TTGAAACGCGAGGCCAAGCTT-AAGGGAGGTTTCTATG 335
||||| || ||||||||| || |||||| | ||||| ||| || || ||||| |||||||
Sbjct 294 AAGGATAATGAGTTGATC-CGATTGAAAAGGGAGGCTAAG-TTGAAAGGAGGGTTCTATG 351
Query 336 TTGACCCTGAAGC-TAA--GCTCTTGTTCATCATCCGTATCCGTGGTATCAATGCCATTG 392
|||| || || || || |||| | || ||||| |||||||||||||||||||||||||
Sbjct 352 TTGATCCAGAGGCGAAATTGCTC-T-TT-ATCATTCGTATCCGTGGTATCAATGCCATTG 408
Query 393 ACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGAT-TTTCAATGGTGT- 450
|||| || || ||||| ||| | |||||| |||||||||||||||| ||| ||||||||
Sbjct 409 ACCCAAAAACCAAGAAAATTTTGCAGCTCCTGCGTTTGAGACAGATCTTT-AATGGTGTG 467
Query 451 TTTCCTTAAAGTCAACAAGGCTAC-GATGAACATGCTT-CGCCGTGTTGAGCCCTATGTC 508
|||| |||| || |||||||| || | | |||||| || ||||| ||||| || || ||
Sbjct 468 TTTC-TTAAGGTGAACAAGGCAACAG-TAAACATG-TTGCGCCGAGTTGAACCTTACGTG 524
Query 509 ACTTACGGATTCCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGA 568
|||||||||| ||| ||||||||||||||||||||| |||||||||| || ||||| |||
Sbjct 525 ACTTACGGATACCCAAACTTGAAGAGTGTCAAGGAACTGATCTACAAAAGGGGTTATGGA 584
Query 569 AAGCTTAACCACCAGAGGATAGCT-TTGACTGACAACTCTATTGTAGAGCAGGCTCTTGG 627
||||| ||||||||||||||||| || ||||||||||| ||||| || || ||||| ||
Sbjct 585 AAGCTGAACCACCAGAGGATAGCACTT-ACTGACAACTCGATTGTGGATCAAGCTCTAGG 643
Query 628 AAAGCATGGTATCATTTGCACTG-AGGATTTGATCCACGAGATTC-TAACAGTAGGACCT 685
|||||||||||||| ||| || ||||| ||||||| ||||| | | || || ||||||
Sbjct 644 GAAGCATGGTATCATCTGCG-TGGAGGATCTGATCCATGAGAT-CATGACCGTTGGACCT 701
Query 686 CATTTCAAGGAAGCCAACAACTTCCTTTGGCCATTCCAGCTT-AAGGCACCACTAGGTGG 744
|| ||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||
Sbjct 702 CACTTCAAGGAAGCCAACAACTTCCTATGGCCATTCCAA-TTGAAGGCACCACTCGGTGG 760
Query 745 CCTCAAGAAGAAGAGAAATCACTACGTGGAAGGTGGTGATGCCGGAAACCGTGAGAACTT 804
|| |||||||||||||| |||||||| |||||||||||||| |||||| | ||||||||
Sbjct 761 TCTTAAGAAGAAGAGAAACCACTACGTCGAAGGTGGTGATGCTGGAAACAGGGAGAACTT 820
Query 805 CATCAATGAGCTTATCAGGAGGATGAATT 833
|||||| |||||| ||||||| |||||||
Sbjct 821 CATCAACGAGCTTGTCAGGAGAATGAATT 849
> Ahg483534 jgi|Araly1|483534|fgenesh2_kg.4__2594__AT2G44120.2
Length=977
Score = 606 bits (328), Expect = 9e-173
Identities = 615/749 (82%), Gaps = 38/749 (5%)
Strand=Plus/Plus
Query 104 GAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAGAAGAGGAAGAGAG-A 162
||||||| ||| || ||||| || || |||||||| || || || |||| ||||| | |
Sbjct 148 GAAATGGCTGAATCCAAGGTAGTGGTACCAGAGTCTGTATTAAAAAAGATCAAGAG-GCA 206
Query 163 GGAGGAATGGGCTTTGGAGAAG-AAGCA-G-AA-TGTTGAAGCCGCCAAGAAGAAGAACG 218
||||||||||| |||| ||| ||| | | || |||| || || |||||||||| |
Sbjct 207 AGAGGAATGGGCATTGGCCAAGAAAG-AGGAAACTGTT---GCTGCTAAGAAGAAGAGTG 262
Query 219 CCGAGAACAGGAAGCTTATCTTCAAAAGAGCCGAGCAATACT-CCAAGGAATATGCCGAG 277
|| | | | ||||| |||||||| ||||| ||||| || | |||| ||||| || |||
Sbjct 263 TTGACACCCGCAAGCTCATCTTCAAGAGAGCTGAGCAGTA-TGCCAAAGAATACGCTGAG 321
Query 278 AAGGAGAAGGAGTTGATCTCG-TTGAAACGCGAGGCCAAGCTT-AAGGGAGGTTTCTATG 335
||||| || ||||||||| || |||||| | ||||| ||| || || ||||| |||||||
Sbjct 322 AAGGATAATGAGTTGATC-CGATTGAAAAGGGAGGCTAAG-TTGAAAGGAGGGTTCTATG 379
Query 336 TTGACCCTGAAGC-TAA--GCTCTTGTTCATCATCCGTATCCGTGGTATCAATGCCATTG 392
|||| || || || || |||| | || ||||| |||||||||||||||||||||||||
Sbjct 380 TTGATCCAGAGGCGAAATTGCTC-T-TT-ATCATTCGTATCCGTGGTATCAATGCCATTG 436
Query 393 ACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGAT-TTTCAATGGTGT- 450
|||| || || ||||| ||| | |||||| |||||||||||||||| ||| ||||||||
Sbjct 437 ACCCAAAAACCAAGAAAATTTTGCAGCTCCTGCGTTTGAGACAGATCTTT-AATGGTGTG 495
Query 451 TTTCCTTAAAGTCAACAAGGCTAC-GATGAACATGCTT-CGCCGTGTTGAGCCCTATGTC 508
|||| |||| || |||||||| || | | |||||| || ||||| ||||| || || ||
Sbjct 496 TTTC-TTAAGGTGAACAAGGCAACAG-TAAACATG-TTGCGCCGAGTTGAACCTTACGTG 552
Query 509 ACTTACGGATTCCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGA 568
|||||||||| ||| ||||||||||||||||||||| |||||||||| || ||||| |||
Sbjct 553 ACTTACGGATACCCAAACTTGAAGAGTGTCAAGGAACTGATCTACAAAAGGGGTTATGGA 612
Query 569 AAGCTTAACCACCAGAGGATAGCT-TTGACTGACAACTCTATTGTAGAGCAGGCTCTTGG 627
||||| ||||||||||||||||| || ||||||||||| ||||| || || ||||| ||
Sbjct 613 AAGCTGAACCACCAGAGGATAGCACTT-ACTGACAACTCGATTGTGGATCAAGCTCTAGG 671
Query 628 AAAGCATGGTATCATTTGCACTG-AGGATTTGATCCACGAGATTC-TAACAGTAGGACCT 685
|||||||||||||| ||| || ||||| ||||||| ||||| | | || || ||||||
Sbjct 672 GAAGCATGGTATCATCTGCG-TGGAGGATCTGATCCATGAGAT-CATGACCGTTGGACCT 729
Query 686 CATTTCAAGGAAGCCAACAACTTCCTTTGGCCATTCCAGCTT-AAGGCACCACTAGGTGG 744
|| ||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||
Sbjct 730 CACTTCAAGGAAGCCAACAACTTCCTATGGCCATTCCAA-TTGAAGGCACCACTCGGTGG 788
Query 745 CCTCAAGAAGAAGAGAAATCACTACGTGGAAGGTGGTGATGCCGGAAACCGTGAGAACTT 804
|| |||||||||||||| |||||||| |||||||||||||| |||||| | ||||||||
Sbjct 789 TCTTAAGAAGAAGAGAAACCACTACGTCGAAGGTGGTGATGCTGGAAACAGGGAGAACTT 848
Query 805 CATCAATGAGCTTATCAGGAGGATGAATT 833
|||||| |||||| ||||||| |||||||
Sbjct 849 CATCAACGAGCTTGTCAGGAGAATGAATT 877
> Ahg478749 jgi|Araly1|478749|fgenesh2_kg.3__1450__AT3G13580.2
Length=1183
Score = 575 bits (311), Expect = 2e-163
Identities = 597/733 (81%), Gaps = 28/733 (4%)
Strand=Plus/Plus
Query 113 GAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAGAAGAGGAAGAGAGAGGAGGAATGG 172
||||| ||| ||| || || ||||| |||||||||||||| ||||| ||||| ||||||
Sbjct 276 GAGTCCAAGACTGTTGTCCCTGAGTCAGTGTTGAAGAAGAGAAAGAGGGAGGAAGAATGG 335
Query 173 GC-TTTGGAGAAGAAGCAGAATG-TTGAAGCCGCCAAGAAGAAGAACGCCGAGAACAGGA 230
|| || | ||||| ||| | | |||| || || || ||| |||| || ||||| ||||
Sbjct 336 GCACTT-GCCAAGAAACAGGA-GCTTGAGGCTGCTAAAAAGCAGAATGCTGAGAAGAGGA 393
Query 231 AGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCC--GAGAAGGAGAA-GG 287
| || || || || | || |||||||||||||||| || || ||||| || || ||
Sbjct 394 AACTCATATTTAACCGGGCTAAGCAATACTCCAAGGAGTA--CCAGGAGAAAGA-AAGGG 450
Query 288 AGTTGATCTC-GTTGAAACGCGAGGCCAAGCTT-AAGGGAGG-TTTCTATGTTGACCCTG 344
| || ||| | | |||| || |||| ||| || || ||||| ||| ||||||||||| |
Sbjct 451 AATTAATC-CAGCTGAAGCGTGAGG-CAAAATTGAAAGGAGGCTTT-TATGTTGACCCAG 507
Query 345 AAGCTAAGCT-CTTGTTCATCATCCGTATCCGTGGTATCAATGCCATTGACCCTAAGACT 403
||||||| || ||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 508 AAGCTAAACTGCTT-TTCATCATCCGTATCCGTGGTATCAATGCCATTGACCCGAAGACA 566
Query 404 AAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGATTTTCAATGGTGTTTTCCTTAAAG-T 462
||||||||| | ||||| |||||| | |||||||||||||||||||| ||| |||||| |
Sbjct 567 AAGAAGATTTTGCAGCTTTTGCGTCTAAGACAGATTTTCAATGGTGTGTTC-TTAAAGGT 625
Query 463 CAACAAGGCTACGATGAACATGCTTCGCCGTGTTGAGCCCTATGTCACTTACGGATTCCC 522
||||||||| || || |||||||||||||||||||| |||||||| || || |||| |||
Sbjct 626 CAACAAGGCAACCATTAACATGCTTCGCCGTGTTGAACCCTATGTGACCTATGGATACCC 685
Query 523 TAACTTGAAGAGTGTCAAGGAATTGATCTACAAGA-GAGGTTACGGAAAGCTTAACCACC 581
||||| || ||||| ||||||||||| ||||| | |||||| ||||||||||||||||
Sbjct 686 GAACTTAAAAAGTGTGAAGGAATTGATTTACAA-ACGAGGTTTTGGAAAGCTTAACCACC 744
Query 582 AGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGGCTCTTGGAAAGCATGGTATCA 641
||||||| || ||||| ||||| || |||||||| |||| || || |||||||| ||||
Sbjct 745 AGAGGATTGCCTTGACAGACAATTCCATTGTAGACCAGGGACTAGGGAAGCATGGCATCA 804
Query 642 TTTGCACTGAGGATTTGATCCACGAGATTC-TAACAGTAGGACCTCATTTCAAGGAAGCC 700
| ||| ||||||| ||||||| ||||| | | || || || || |||||||||||||||
Sbjct 805 TCTGCGTTGAGGATCTGATCCATGAGAT-CATGACGGTTGGGCCACATTTCAAGGAAGCC 863
Query 701 AACAACTTCCTT-TGGCCATTCCAGCTT-AAGGCACCACTAGGTGGCCTCAAGAAGAAGA 758
|||||||| || |||||||||||| || ||||| ||| | || || | ||||||||||
Sbjct 864 AACAACTTT-TTGTGGCCATTCCAG-TTGAAGGCGCCATTGGGAGGGATGAAGAAGAAGA 921
Query 759 GAAATCACTACGTGGAAGGTGGTGATGCCGGAAACCGTGAGAACTTCATCAATGAGCTTA 818
| || || ||||||||||| || ||||| |||||||| |||||||||||||| |||||
Sbjct 922 GGAACCATTACGTGGAAGGAGGAGATGCTGGAAACCGCGAGAACTTCATCAACGAGCTCG 981
Query 819 TCAGGAGGATGAA 831
| ||||| |||||
Sbjct 982 TTAGGAGAATGAA 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40257800352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5