BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01270.1
Length=2033
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935831 jgi|Araly1|935831|scaffold_500022.1 2564 0.0
Ahg484041 jgi|Araly1|484041|fgenesh2_kg.5__33__AT2G01275.1 76.8 6e-13
> Ahg935831 jgi|Araly1|935831|scaffold_500022.1
Length=1535
Score = 2564 bits (1388), Expect = 0.0
Identities = 1484/1531 (97%), Gaps = 4/1531 (0%)
Strand=Plus/Plus
Query 113 TTCGATTGGATTTGATGTCTTTGGTGCATCTGCTTTTGTTCGCCGGCCTTGTAATCGCCG 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 TTCGATTGGATTTGATGTCTTTGGTGCATCTGCTTTTGTTCGCCGGCCTTGTAATCGCCG 66
Query 173 CTTCCTCTTCTTCCCCGGGCTCGCGCTTGATTCTCCGGGAAATCTCCGATCAGAAAGACA 232
|||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 67 CTTCTTCTTCTTCCCCGGGCTCGCGCTTGATTCTCCGGGAAATCGCCGATCAAAAAGACA 126
Query 233 AAGCTGTTGAATTGAACACTACCAACTTCGATTCAGTCCTTAAAGACACCCCCGCCAAGT 292
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 127 AAGCTGTTGAATTGAACACTACCAACTTCGATTCAGTTCTTAAAGACACCCCTGCCAAGT 186
Query 293 ATGCCGTCGTCGAATTCTTCGCTCACTGGTGTCCTGCCTGTAGAAACTACAAGCCTCATT 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 ATGCCGTCGTCGAATTCTTCGCTCACTGGTGTCCTGCCTGTAGAAACTACAAGCCTCATT 246
Query 353 ACGAAAAGGTTGCAAGGCTCTTCAATGGTCCAGATGCAATACATCCAGGAATCGTTTTGA 412
|||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 247 ACGAGAAGGTCGCAAGGCTCTTCAATGGACCAGATGCAATACATCCCGGAATCGTTTTGA 306
Query 413 TGACTAGAGTTGATTGTGCAATGAAGACGAATACCAAGCTCTGTGACAAGTTCTCTGTTT 472
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 307 TGACTAGAGTTGATTGTGCAATAAAGACGAATACCAACCTCTGTGACAAGTTCTCTGTTT 366
Query 473 CTCACTATCCAATGCTCTTTTGGGGTCCTCCTACT-AAGTTTGTCTCTGGCAGTTGGGAA 531
|||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 367 CTCATTATCCAATGCTCTTTTGGGGTCCTCCTA-TAAAGTTTGTCTCTGGCAGTTGGGAA 425
Query 532 CCTAAAAAGGATAAAAGTGAGATACTTGTTATTGATGACGGCCGCACTGCTGAGCGTTTG 591
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 426 CCTAAAAAGGATAAAAGCGATATACTTGTTATTGATGATGGCCGCACTGCTGAGCGTTTG 485
Query 592 CTCAACTGGATTAACAAGCAGATTGGCAGTTCTTATGGCTTGGATGATCAGAAATTCAAA 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 486 CTCAACTGGATTAACAAGCAGATTGGCAGTTCTTATGGCTTGGATGATCAGAAATTCGAA 545
Query 652 AACGAACATGCCCTGTCGAATCTAACCGACTACAACCAGATTTCTCAGGCTGTGTATGAT 711
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 546 AACGAACATGCCCTGTCGAATATAACCGACTACAACCAGATTTCTCAGGCTGTGTATGAC 605
Query 712 GTCGAGGAAGCAACCGCAGAAGCTTTTGATATCATTTTAGCACATAAGGCCATTAAGTCA 771
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 606 GTCGAGGAAGCAACCGCAGAAGCGTTTGATATCATTTTAGCACATAAGGCCATTAAGTCA 665
Query 772 TCTGAAACAAGTGCTTCATTTATAAGATTTATCCAGCTTCTAGCAGCACATCATCTTTCC 831
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 TCTGAAACAGGTGCTTCATTTATAAGATTTATCCAGCTTCTAGCAGCACATCATCTTTCC 725
Query 832 AGGAGGTGTCGGAAAGGAGCTGCAGAAATTCTAGTGAACTATGATGATTTATGCCCTTCT 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 AGGAGGTGTCGGAAAGGAGCTGCAGAAATTCTAGTGAACTATGATGATTTATGCCCTTCT 785
Query 892 GGAAATTGCTCTTACGAAAAATCTGGAGGGAACGATACCCTG-GGAAATTTCCCTATTTG 950
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 786 GGAAATTGCTCTTACGAAAAATCTGGAGGGAACGATACCCTGAGGAA-TTTCCCTATTTG 844
Query 951 TGGAAAGGATGTTCCGCGTGGATACTACATGTTTTGCCGTGGCAGCAAGAACGATACTCG 1010
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 845 TGGAAAGGATGTTCCGCGTGGATACTATATGTTTTGCCGTGGCAGCAAGAACGATACTCG 904
Query 1011 CGGATTTAGCTGTGGATTATGGGTTCTGATGCATTCGCTTTCCGTGAGAATTGAGGATGG 1070
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 905 CGGATTCAGCTGTGGATTATGGGTTCTGATGCATTCACTTTCCGTGAGAATTGAGGATGG 964
Query 1071 AGAAAGTCATTTTGCATTCACGACAATATGCGATTTCGTCAACAACTTCTTCATGTGTGA 1130
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 965 AGAAAGTCATTTTGCATTCACGGCAATATGCGACTTCGTCAACAACTTCTTCATGTGTGA 1024
Query 1131 TGAATGCCGCCTGCATTTCAATGACATGTGCTTGAGCGTCAAAACCCCTTTCAAAAAGGC 1190
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1025 TGAATGCCGCCTGCATTTCAACGACATGTGCTTGAGCGTCAAAACTCCTTTCAAAAAGGC 1084
Query 1191 ACGTGATTTCGTATTGTGGGTGTGGAGCACACACAACAAGGTCAACGAGAGACTCTTGAA 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1085 ACGTGATTTCGTATTGTGGGTGTGGAGCACACACAACAAGGTCAACGAGAGACTCATGAA 1144
Query 1251 GGACGAAGCTTCCCTTGGTACAGGTGACCCCAAGTTCCCCAAGATTATATGGCCACCAAA 1310
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 AGACGAAGCTTCTCTTGGTACAGGTGACCCCAAGTTCCCCAAGATTATATGGCCACCAAA 1204
Query 1311 GGAGCTTTGCCCATTGTGTTATCTTTCAAGTAATCAGAAAAGCATAGAGTGGGACCATGA 1370
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 1205 GGAGCTTTGCCCATTGTGTTATCTCTCAAGTAACCAGAAAAGCATAGAGTGGGACCACGA 1264
Query 1371 ACATGTCTACAAGTTCTTGAAGAACTACTATGGGCCTAAGCTCGTATCTCTTTACAAGGA 1430
|||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||
Sbjct 1265 CCATGTCTACAAGTTCTTGAAGAGCTACTATGGGCCTAAGCTCGTCTCCCTTTACAAGGA 1324
Query 1431 AAAGAGTGTCAGCCGGAGCAAGGAAGAGACCGTCTCAGCCACTGAAGACTTAACAGTGGC 1490
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1325 AAAGAGTGTCAGCGGGAGCAAGGAAGAGACCGTCTCAGCCACTGAAGACTTGACAGTGGC 1384
Query 1491 CACCAATGCTCTGGTTGTGCCGATTGGAGCTGCATTGGCAATAGCCATCGCCAGCTGTGC 1550
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1385 CACCAACGCTCTGGTTGTGCCGATTGGAGCAGCATTGGCAATAGCCATCGCCAGCTGTGC 1444
Query 1551 ATTTGGGGCGCTTGCTTGTTACTGGAGGACACAGCAGAAGAACCGCAAGCCGAGGAGAAG 1610
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 ATTTGGGGCGCTTGCCTGTTACTGGAGGACACAGCAGAAGAACCGCAAGCCGAGGAGAAG 1504
Query 1611 GTGAAACTAAACTACAAGAAGGTCTTGATGT 1641
||||||||||||||||||||| |||||||||
Sbjct 1505 GTGAAACTAAACTACAAGAAGCTCTTGATGT 1535
> Ahg484041 jgi|Araly1|484041|fgenesh2_kg.5__33__AT2G01275.1
Length=1071
Score = 76.8 bits (41), Expect = 6e-13
Identities = 50/54 (93%), Gaps = 1/54 (2%)
Strand=Plus/Minus
Query 1981 CAATCTGTTAAACCAATCCAACATTTTACATGTATAAGCCAGAAGTTAT-ATTT 2033
||||||||| || ||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1071 CAATCTGTTGAATCAATCCAACATTTTACATGTATAAGCCAGAAATTATTATTT 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76447121715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5