BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01275.1
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484041 jgi|Araly1|484041|fgenesh2_kg.5__33__AT2G01275.1 1657 0.0
> Ahg484041 jgi|Araly1|484041|fgenesh2_kg.5__33__AT2G01275.1
Length=1071
Score = 1657 bits (897), Expect = 0.0
Identities = 1021/1078 (95%), Gaps = 19/1078 (2%)
Strand=Plus/Plus
Query 5 TTAGCGTCAGAATAAACTAAATACGAttctcttcttctaagtctcctttttcttcgcttt 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTAGCGTCAGAAAAAACTAAATACGATTCTCTTCTTCTAAGTCTCCTTTTTCTTCGCTTT 60
Query 65 tccacttcttcttcttc-ttctttctttctttcAAAAGCAGAAGAAAACGGTACAAAGCT 123
||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TCCACTTGTTCTTCTTCTTTCTTTCTTTCTTTCAAAAGCAGAAGAAAACGCTACAAAGCT 120
Query 124 CTTTTGCTCCTCCATCTCCTAAAATTTGGCTGC-A-C--GTTTCTTTCTATACCGTGAGA 179
|||||||| || |||||||| ||||||||| | | |||||||||| |||||||| |
Sbjct 121 CTTTTGCT-CT---TCTCCTAACTTTTGGCTGCAAGCAAGTTTCTTTCTTTACCGTGA-A 175
Query 180 ACAGAGAACATGGGAGATCATTTCGTGCTGCTGGTGGATCGGTTGATAACAGAATCCACG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 176 ACAGAGAACATGGGAGATCATTTCGTGCTGCTGGTGGATCGGTTGATAACAGAGTCCACG 235
Query 240 ATTGAGGCTGCGATTCAGAGCAGGAACCAGATGTTGCAAGCTAATATACCCGTTGAGGAA 299
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 236 ATTGAGGCTGCGATTCAGAGCAGGAACCAGATGTTGCAAGCCAATTTACCCGTTGAGGAA 295
Query 300 TGTACAATCTTGGACGATAAAACACTTGAGATGCTGCGTAACGGAGATTTGTCAATGGCT 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TGTACAATCTTGGACGAGAAAACACTTGAGATGCTGCGTAACGGAGATTTGTCAATGGCT 355
Query 360 GAGTGCAGGATCTGTCACGACGAGGACTTGGATTCCAACATGGAGACTCCTTGTTCTTGC 419
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CAGTGCAGGATTTGTCACGACGAGGACTTGGATTCCAACATGGAGACTCCTTGTTCTTGC 415
Query 420 AGCGGCAGCGTCAAGTATGCGCATAGGAGGTGCGTACAGAGATGGTGTAACGAGAAAGGT 479
|||||||||||||||| ||||||| |||||||||||||| ||||||| ||||||||||||
Sbjct 416 AGCGGCAGCGTCAAGTTTGCGCATCGGAGGTGCGTACAGCGATGGTGCAACGAGAAAGGT 475
Query 480 GATACCACCTGCGAGATTTGCCATCAGGAATTCAAGCCGGATTATACAGCGCCGCCTCCG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GATACCACCTGCGAGATTTGCCATCAGGAATTCAAGCCGGATTATACAGCGCCGCCTCCG 535
Query 540 TTGCTAGAGTTAGGCCATGTTCCTCTCCATTTCAGGGGAAACTGGGGAATCTCTCAACGG 599
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TTGCTAGAGTTGGGTCATGTTCCTCTCCATTTCAGGGGAAACTGGGGAATCTCTCAACGG 595
Query 600 GAGCATCGTTTCATCACAGTTGTACCTGCTGATTCCACTTTTATTGACCAACCATATCCT 659
||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||||||
Sbjct 596 GAGCATCGTTTCATCACAGTTGTACCTGCTGATTCAACTTTCATCGACCAACAATATCCT 655
Query 660 CTTTCTTCCACCACAAGCTTCATCTGTTGCCGTTCCCTTGTTCTCATTTTCATGGCTCTT 719
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 656 CTTTCTTCCACCACAAGCTTCATCTGTTGCCGTTCCCTTGTTCTCATCTTCATGGCTCTT 715
Query 720 CTCATTCTCCGACATACCCT-CCCTTTAGTCCTCACCGGATCAAACCTTCATGTCTTCCC 778
||||||||||| |||||||| ||||| ||||||| | ||||||||||| |||||||||||
Sbjct 716 CTCATTCTCCGGCATACCCTTCCCTT-AGTCCTCTCTGGATCAAACCTCCATGTCTTCCC 774
Query 779 TTTGTTCACGTTGTTATTTCTGAGAATACTCGGAATCATGCTACCCATCTACGTTGTCAC 838
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 775 TTTGTTCACGTTGTTATTTCTGAGAGTACTCGGAATCATGCTACCCATCTACGTTGTCAC 834
Query 839 CAAAGCAGTCGCCACCTGCCGCCGCCATTCTCGGACCTTAGACACCTCTCCCTCCGATGA 898
|||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| |||||
Sbjct 835 CAAAGCAGTCGCCACCTGCCGCCGCCATCCTCAGACCTTAGACACCTCTCACTCTGATGA 894
Query 899 TTCATC-T--GATGAAGAAACAGATTCATGGCGCTTGCCTCAAACGCAATCTTACATTAT 955
|||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 895 TTCATCATCTGATGAAGAAACAGATTCATGGCGCTTGCCTCAAACTCAATCTTACATTAT 954
Query 956 AGGCGTACGATGATCACTCATTCTTTTCTTTcacacaca--cacacaAAGTCAAATGACA 1013
||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct 955 AGGCGTACGATGAGCACTC-TTCTTTTCTTTCACAGACATACACACAAAGTCAAATGACA 1013
Query 1014 CTGTAAATA-TAACTTCTGGCTTATACATGTAAAATGTTGGATTGGTTTAACAGATTG 1070
||||||||| ||| ||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1014 CTGTAAATAATAATTTCTGGCTTATACATGTAAAATGTTGGATTGATTCAACAGATTG 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40219677435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5