BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G01275.1 Length=1080 Score E Sequences producing significant alignments: (Bits) Value Ahg484041 jgi|Araly1|484041|fgenesh2_kg.5__33__AT2G01275.1 1657 0.0 > Ahg484041 jgi|Araly1|484041|fgenesh2_kg.5__33__AT2G01275.1 Length=1071 Score = 1657 bits (897), Expect = 0.0 Identities = 1021/1078 (95%), Gaps = 19/1078 (2%) Strand=Plus/Plus Query 5 TTAGCGTCAGAATAAACTAAATACGAttctcttcttctaagtctcctttttcttcgcttt 64 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTAGCGTCAGAAAAAACTAAATACGATTCTCTTCTTCTAAGTCTCCTTTTTCTTCGCTTT 60 Query 65 tccacttcttcttcttc-ttctttctttctttcAAAAGCAGAAGAAAACGGTACAAAGCT 123 ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 TCCACTTGTTCTTCTTCTTTCTTTCTTTCTTTCAAAAGCAGAAGAAAACGCTACAAAGCT 120 Query 124 CTTTTGCTCCTCCATCTCCTAAAATTTGGCTGC-A-C--GTTTCTTTCTATACCGTGAGA 179 |||||||| || |||||||| ||||||||| | | |||||||||| |||||||| | Sbjct 121 CTTTTGCT-CT---TCTCCTAACTTTTGGCTGCAAGCAAGTTTCTTTCTTTACCGTGA-A 175 Query 180 ACAGAGAACATGGGAGATCATTTCGTGCTGCTGGTGGATCGGTTGATAACAGAATCCACG 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 176 ACAGAGAACATGGGAGATCATTTCGTGCTGCTGGTGGATCGGTTGATAACAGAGTCCACG 235 Query 240 ATTGAGGCTGCGATTCAGAGCAGGAACCAGATGTTGCAAGCTAATATACCCGTTGAGGAA 299 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 236 ATTGAGGCTGCGATTCAGAGCAGGAACCAGATGTTGCAAGCCAATTTACCCGTTGAGGAA 295 Query 300 TGTACAATCTTGGACGATAAAACACTTGAGATGCTGCGTAACGGAGATTTGTCAATGGCT 359 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 296 TGTACAATCTTGGACGAGAAAACACTTGAGATGCTGCGTAACGGAGATTTGTCAATGGCT 355 Query 360 GAGTGCAGGATCTGTCACGACGAGGACTTGGATTCCAACATGGAGACTCCTTGTTCTTGC 419 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 CAGTGCAGGATTTGTCACGACGAGGACTTGGATTCCAACATGGAGACTCCTTGTTCTTGC 415 Query 420 AGCGGCAGCGTCAAGTATGCGCATAGGAGGTGCGTACAGAGATGGTGTAACGAGAAAGGT 479 |||||||||||||||| ||||||| |||||||||||||| ||||||| |||||||||||| Sbjct 416 AGCGGCAGCGTCAAGTTTGCGCATCGGAGGTGCGTACAGCGATGGTGCAACGAGAAAGGT 475 Query 480 GATACCACCTGCGAGATTTGCCATCAGGAATTCAAGCCGGATTATACAGCGCCGCCTCCG 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 GATACCACCTGCGAGATTTGCCATCAGGAATTCAAGCCGGATTATACAGCGCCGCCTCCG 535 Query 540 TTGCTAGAGTTAGGCCATGTTCCTCTCCATTTCAGGGGAAACTGGGGAATCTCTCAACGG 599 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 TTGCTAGAGTTGGGTCATGTTCCTCTCCATTTCAGGGGAAACTGGGGAATCTCTCAACGG 595 Query 600 GAGCATCGTTTCATCACAGTTGTACCTGCTGATTCCACTTTTATTGACCAACCATATCCT 659 ||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||||||| Sbjct 596 GAGCATCGTTTCATCACAGTTGTACCTGCTGATTCAACTTTCATCGACCAACAATATCCT 655 Query 660 CTTTCTTCCACCACAAGCTTCATCTGTTGCCGTTCCCTTGTTCTCATTTTCATGGCTCTT 719 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 656 CTTTCTTCCACCACAAGCTTCATCTGTTGCCGTTCCCTTGTTCTCATCTTCATGGCTCTT 715 Query 720 CTCATTCTCCGACATACCCT-CCCTTTAGTCCTCACCGGATCAAACCTTCATGTCTTCCC 778 ||||||||||| |||||||| ||||| ||||||| | ||||||||||| ||||||||||| Sbjct 716 CTCATTCTCCGGCATACCCTTCCCTT-AGTCCTCTCTGGATCAAACCTCCATGTCTTCCC 774 Query 779 TTTGTTCACGTTGTTATTTCTGAGAATACTCGGAATCATGCTACCCATCTACGTTGTCAC 838 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 775 TTTGTTCACGTTGTTATTTCTGAGAGTACTCGGAATCATGCTACCCATCTACGTTGTCAC 834 Query 839 CAAAGCAGTCGCCACCTGCCGCCGCCATTCTCGGACCTTAGACACCTCTCCCTCCGATGA 898 |||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| Sbjct 835 CAAAGCAGTCGCCACCTGCCGCCGCCATCCTCAGACCTTAGACACCTCTCACTCTGATGA 894 Query 899 TTCATC-T--GATGAAGAAACAGATTCATGGCGCTTGCCTCAAACGCAATCTTACATTAT 955 |||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 895 TTCATCATCTGATGAAGAAACAGATTCATGGCGCTTGCCTCAAACTCAATCTTACATTAT 954 Query 956 AGGCGTACGATGATCACTCATTCTTTTCTTTcacacaca--cacacaAAGTCAAATGACA 1013 ||||||||||||| ||||| ||||||||||||||| ||| ||||||||||||||||||| Sbjct 955 AGGCGTACGATGAGCACTC-TTCTTTTCTTTCACAGACATACACACAAAGTCAAATGACA 1013 Query 1014 CTGTAAATA-TAACTTCTGGCTTATACATGTAAAATGTTGGATTGGTTTAACAGATTG 1070 ||||||||| ||| ||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1014 CTGTAAATAATAATTTCTGGCTTATACATGTAAAATGTTGGATTGATTCAACAGATTG 1071 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40219677435 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5