BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01280.1
Length=2257
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316772 jgi|Araly1|316772|fgenesh1_pm.C_scaffold_2001805 1546 0.0
Ahg346626 jgi|Araly1|346626|fgenesh1_pg.C_scaffold_5000018 894 0.0
Ahg317739 jgi|Araly1|317739|fgenesh1_pm.C_scaffold_3000755 569 2e-161
Ahg341076 jgi|Araly1|341076|fgenesh1_pg.C_scaffold_3000839 544 1e-153
Ahg484042 jgi|Araly1|484042|fgenesh2_kg.5__34__AT2G01290.1 499 3e-140
Ahg918622 jgi|Araly1|918622|Al_scaffold_0357_1 472 7e-132
> Ahg316772 jgi|Araly1|316772|fgenesh1_pm.C_scaffold_2001805
Length=1725
Score = 1546 bits (837), Expect = 0.0
Identities = 1174/1325 (89%), Gaps = 70/1325 (5%)
Strand=Plus/Plus
Query 370 AGCTACCTTCGAGTTAGCGTTTACGAGTTAGGTTCCGTGTACTTGCAACTCTGTGAAATG 429
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 424 AGCTACCTTCGAGTTAGCGTTTACGAGTTAGGTTCTGTGTACTTGCAACTCTGTGAAATG 483
Query 430 CTGTACCTTGTGCAAAACAAGAACTATGAGGAGCTTGTTGATCCTTCAATCTTCATTCCT 489
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 484 CTGTACCTTGTGCAAAACGAGAACTATGAGGAGCTTGTTGATCCTTCAATCTTCATTCCT 543
Query 490 CGATTCACAAACAGCTTATTGAAAGGTGCACACGCTA-AAGCAAAAGATGTC--GCA-AA 545
||||||| |||| ||||||||||||||||||| || || ||||| ||||| | | ||
Sbjct 544 CGATTCATGAACAACTTATTGAAAGGTGCACACAATATAA-CAAAAAATGTCTGGGATAA 602
Query 546 ---C------ACGGCTAAAAACATTATATCTAGTATGAAGAGAGATTGGATACAGACAGG 596
| ||||||| ||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 603 GGTCTTTGGTACGGCTACAAACATTATATCTAGTATGAAGAGAGATTGGATGCAGACCGG 662
Query 597 CCGGAAACCAAGTGGAATATGTGGAGCAGCAATTTACATGGCTGCACTTTCTCATGGTAT 656
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 663 CCGGAAACCAAGTGGAATATGTGGAGCAGCAATTTACATAGCTGCACTTTCTCATGGTAT 722
Query 657 CATGTACTCTAGGGCAGACATTGCAAAAGTTGTGCATATGTGTGAAGCAACAATAACCAA 716
||||| |||||| ||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 723 CATGTGCTCTAGAGCAGATATTGCAAAAATTGTGCATATGTGTGAAGCAACAATAACCAA 782
Query 717 AAGATTGAATGAATTTGCTAATACCGAGGCTGGAAGTTTAACTGTTGATGAGCTTGATGA 776
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 783 AAGATTGAATGAGTTTGCTAATACCAAGGCTGGAAGTTTAACTGTTGATGAGCTTGATAA 842
Query 777 AAGCGAAGAGATATTGCGTAAAGAAACTTTTACCCCAAGACCAAATTCTGACAAAGGAGT 836
||||||| ||||| |||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 843 AAGCGAACCGATATCGCGTAAAGAAGCTTTTACCCCAAGACCAAATTCTGACGAAGGAGT 902
Query 837 AGTGAACTGTAAACATAAGGATTTAAAACGCTTTGGTTATGGATTATGTAAGAGCTGTCA 896
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 903 AGTGAACTGTCAACATAAGGATTTAAAACGTTTTGGTTATGGATTATGTAAGAGCTGTCA 962
Query 897 CGACGATTTCATTATAATTTCTGGTGGAGTTGTTGGTGGGTCGGATCCTCCTGCTTAT-C 955
||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 963 CGATGATTTCATTAAAATTTCTGGTGGAATTGTTGGTGGGTCGGATCCTCCTGCTT-TCC 1021
Query 956 AGCGAGCAGAGAAAGAGAGAATGGAAAAAGCAGCTAGAGAAGAAAACGAGGGAGGAATTG 1015
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1022 AGCGAGCAGAGAAAGAGAGAATGGAAAAAGCAGCTAGAGAAGAAAATGAGGGAGGAATTG 1081
Query 1016 GTAACTTAAACCACGATGAACAAGTTAATGTAAGCAAAAGGGCaaaaa-aaTGTTCGGAG 1074
||| | ||||||||||| |||||||||||| ||| ||||| ||||| |||||
Sbjct 1082 GTAGC---------GATGAACAAGTAAATGTAAGCAAAGGGG-AAAAACAATGTCCGGAG 1131
Query 1075 AAAGGCGAAGGAGAAACATATGGGGGTGAAAGA-CATGCTGAATATTCGGA------TGA 1127
|||||| ||||||||| ||||||||||||| || ||||||||||||||||| |||
Sbjct 1132 AAAGGCCAAGGAGAAAAATATGGGGGTGAA-GAACATGCTGAATATTCGGACGACGATGA 1190
Query 1128 ATCAGACATCTGTTCGGACGACGATGATTCTGAGGTGGAACATGTTCTTCTCGGTGAGGA 1187
||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1191 ATCAGGCATCTGTTCGGACGACGATGATTCTGAGGTGGATCACATTCTTCTCGGTGAGGA 1250
Query 1188 CGAAACGCGGTTGAAGACAACGGCCTGGAATTTACAAAACAAAGACTATCTTGAGGAGCA 1247
|||||||| ||||||||| |||||||||||||| ||||||| ||| ||| || |||||||
Sbjct 1251 CGAAACGCTGTTGAAGACGACGGCCTGGAATTTGCAAAACAGAGAGTATGTTAAGGAGCA 1310
Query 1248 AGCAGAAAAGGAAGCAGCTCTGAAGGCTGCTAATTGCCCCGAAGATGCAAGAAACCTTGT 1307
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1311 AGCAGAAAAAGAAGCAGCTCTGAAGGCAGCTAATTGCCCAGAAGATGCAAGAAACCTTGT 1370
Query 1308 GGAAGCTTCTAAAGCAGCTGTGGCGAATTCTAGAAAGGAAAAGCGACGAAAACGTGCTGA 1367
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1371 GGAAGCTTCTAAAGCAGCTGTGGCGAAATCTAGAAAGGAAAAGCGACAAAAACGTGCTGA 1430
Query 1368 GGAAGCTAAGAATGCACCTCCATC-AGCTACAGCCACGGAAGCA-T-C---------TT- 1414
|||| ||||| |||||||| || ||||||| ||| |||||| | | ||
Sbjct 1431 AGAAGAAAAGAACGCACCTCC-TCCAGCTACAACCATGGAAGCTGTTCGCAGAACACTTG 1489
Query 1415 ATAC-A-GAGACTCAGCGGGTTAATCAAC-ACCATGTTTTGGACGAGCTCTTGGATACTA 1471
| | | ||||||| | |||||||| ||| || |||||||||| |||||||| |||||||
Sbjct 1490 AGAGGAAGAGACTCGGTGGGTTAATAAACTACGATGTTTTGGAGGAGCTCTTTGATACTA 1549
Query 1472 GCCCA---A------CACAGAAGAAACCGAGAACCGAGACAGTAACGGagaagaagaagg 1522
||||| | |||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 1550 GCCCAGGTAAGAAGTCACAGAAGAAACCGAGAACCGAGACAGTTACAGAGAAGGAGAAGG 1609
Query 1523 aagagcatgagattgttgaagatgaagaagatgaagaagaCTACGCAGCACCACACGCAG 1582
||||||||||||||| |||||||||||||| | | |||| || | | || |||
Sbjct 1610 AAGAGCATGAGATTGATGAAGATGAAGAAGC--ACCA----TACG-AG-ATGA-ACACAG 1660
Query 1583 ATGAGAACTTCTATGAAGACGAAGTGGAAGAGGAAGAGAATGGTTATGATTTTGGATTGT 1642
||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1661 ATGAGAAATTCTATGAAGACGAAGTGGAAGAAGAAGAGGATGGTTATGATTTTGGATTGT 1720
Query 1643 ATTAA 1647
|||||
Sbjct 1721 ATTAA 1725
Score = 477 bits (258), Expect = 1e-133
Identities = 347/387 (90%), Gaps = 17/387 (4%)
Strand=Plus/Plus
Query 1 ATGGTGTGGTGTAAGCATTGTGCGAAGAATGTTCCCAAAATTCGCCCCTTCGACGGTGGT 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGGTGTGGTGTAAGCATTGTGCGAAGAATGTTCCCGGAATTCGCCCCTTCGACGGTGGT 60
Query 61 TTGGCATGTGATTTATGTGGGAGGATTTTGGAAAACTTCAATTTTTCTACTGATGTTACC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGGCATGTGATTTATGTGGGAGGATTTTGGAAAACTTCAATTTTTCTACTGATGTTACC 120
Query 121 TTCGTTAAGAATGCCGCT-G---GA--C-AG-GT-ATGTAATATAGTGACGAGTG-T--- 167
|||||||||||||||||| | || | || || | |||| || |||||||||| |
Sbjct 121 TTCGTTAAGAATGCCGCTGGACAGAGCCAAGCGTCAGGTAACATTGTGACGAGTGTTCAG 180
Query 168 --TGGGAATTCAAGCTCACGTGATAGGAGAAGGAGAAAAGCTATAGATGAGTTAAGGAAT 225
|||| ||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||
Sbjct 181 AGTGGGCTTTCAAGCTCACGTGAAAGGAGAAAGAGAATAGCTAGAGATGAGTTAAGGAAT 240
Query 226 TTGAAAGATGCCTTAGGAATCGGTGATGAGAGAGATGATGTGGTTGACATGGCTGCCGTA 285
|||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |
Sbjct 241 TTGAAAGATGCCTTGGGAATTGGTGATGAGAGAGATGATGTGATTGTCATGGCTGCCGAA 300
Query 286 TTCTATGAAGCGGCAA-TGGACCAAAACTTCACCAAAGGGCGCAGAGCTGAACTTGTACA 344
|||| |||| ||||| || ||||||||||||| |||||||||||| |||||||||||||
Sbjct 301 TTCTTTGAAATGGCAACTG-ACCAAAACTTCACTAAAGGGCGCAGAACTGAACTTGTACA 359
Query 345 GTCTTCCTGTCTCTATTTGGCTTGCAG 371
||||||||||||||| ||| |||||||
Sbjct 360 GTCTTCCTGTCTCTACTTGACTTGCAG 386
> Ahg346626 jgi|Araly1|346626|fgenesh1_pg.C_scaffold_5000018
Length=1599
Score = 894 bits (484), Expect = 0.0
Identities = 605/661 (92%), Gaps = 18/661 (3%)
Strand=Plus/Plus
Query 370 AGCTACCTTCGAGTTAGCGTTTACGAGTTAGGTTCCGTGTACTTGCAACTCTGTGAAATG 429
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 424 AGCTACCTTCGAGTTAGCGTTTACGAGTTAGGTTCTGTGTACTTGCAACTCTGTGAAATG 483
Query 430 CTGTACCTTGTGCAAAACAAGAACTATGAGGAGCTTGTTGATCCTTCAATCTTCATTCCT 489
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TTCTACCTTGTGCAAAACGGGAACTATGAGGAGCTTGTTGATCCTTCAATCTTCATTCCT 543
Query 490 CGATTCACAAACAGCTTATTGAAAGGTGCACACGCTAAAGCAAAAGATGTC--GCA-AA- 545
| ||||| |||| ||||||||||||||||||| || ||||||| ||||| | | ||
Sbjct 544 CAATTCATGAACAACTTATTGAAAGGTGCACACAATATAGCAAAAAATGTCTTGGATAAG 603
Query 546 --C------ACGGCTAAAAACATTATATCTAGTATGAAGAGAGATTGGATACAGACAGGC 597
| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 604 GTCTTGGGTACGGCTACAAACATTATATCTAGTATGAAGAGAGATTGGATGCAGACCGGC 663
Query 598 CGGAAACCAAGTGGAATATGTGGAGCAGCAATTTACATGGCTGCACTTTCTCATGGTATC 657
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 664 CGGAAACCAAGTGGAATATGTGGAGCAGCAATTTACATAGCTGCACTTTCTCATGGTATC 723
Query 658 ATGTACTCTAGGGCAGACATTGCAAAAGTTGTGCATATGTGTGAAGCAACAATAACCAAA 717
|||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 724 ATGTGCTCTAGGGCAGATATTGCAAAAATTGTGCATATGTGTGAAGCAACAATAACCAAA 783
Query 718 AGATTGAATGAATTTGCTAATACCGAGGCTGGAAGTTTAACTGTTGATGAGCTTGATGAA 777
|||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 784 AGATTGGATGAGTTTGCTAATACCGAGGCTGCAAGTTTAACTGTTGATGAGCTTGATAAA 843
Query 778 AGCGAAGAGATATTGCGTAAAGAAAC-TTTTACCCCAAGACCAAATTCTGACAAAGGAGT 836
|||||| | ||||||||| || |||| ||||| ||||||||||||||||||| |||||||
Sbjct 844 AGCGAAAATATATTGCGTGAA-AAACCTTTTAGCCCAAGACCAAATTCTGACGAAGGAGT 902
Query 837 AGTGAACTGTAAACATAAGGATTTAAAACGCTTTGGTTAT-GGATTATGTAAGAGCTGTC 895
|||||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||
Sbjct 903 AGTGAACTGTAAGCATAAGGATTTAAAACGTTTTGGTT-TCGGATTATGTAAGAGCTGTC 961
Query 896 ACGACGATTTCATTATAATTTCTGGTGGAGTTGTTGGTGGGTCGGATCCTCCTGCTTATC 955
|||| | |||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 962 ACGATGCTTTCATGAAAATTTCTGGTGGAGTTGTTGGTGGGTCGGATCCTCCTGCTT-TC 1020
Query 956 -AGCGAGCAGAGAAAGAGAGAATGGAAAAAGCAGCTAGAGAAGAAAACGAGGGAGGAATT 1014
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1021 CAGCGACCAGAGAAAGAGAGAATGGAAAAAGCAGCTAGAGAAGTAAACGAGGGAGGAATT 1080
Query 1015 G 1015
|
Sbjct 1081 G 1081
Score = 411 bits (222), Expect = 2e-113
Identities = 338/390 (87%), Gaps = 23/390 (6%)
Strand=Plus/Plus
Query 1 ATGGTGTGGTGTAAGCATTGTGCGAAGAATGTTCCCAAAATTCGCCCCTTCGACGGTGGT 60
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGGTGTGGTGTAACCATTGTGCGAAGAATGTTCCCGGAATTCGCCCCTTCGACGGTGGT 60
Query 61 TTGGCATGTGATTTATGTGGGAGGATTTTGGAAAACTTCAATTTTTCT-ACTGATGTTAC 119
|||||||||||||||||||||||||| ||||||||||||||||||||| | ||| |||||
Sbjct 61 TTGGCATGTGATTTATGTGGGAGGATATTGGAAAACTTCAATTTTTCTGA-TGAAGTTAC 119
Query 120 CTTCGTTAAGAATGCCGCT-G---GA--C-AG-GT-ATGTAATATAGTGACGAGTGTT-- 168
|||||||||||||| ||| | || | || || | |||| |||||||||||||||
Sbjct 120 ATTCGTTAAGAATGCGGCTGGACAGAGCCAAGCGTCAGGTAACATAGTGACGAGTGTTCA 179
Query 169 --G-GGAATT-CAAGCTCACGTGATA-GGAGAAGGAGAAAAGCTATAGATGAGTTAAGGA 223
| || ||| |||||||||||| || | ||| |||| ||||| ||||||||| ||||
Sbjct 180 GAGTGGGATTCCAAGCTCACGTG-TACGAAGATTTAGAATAGCTAGAGATGAGTTTAGGA 238
Query 224 ATTTGAAAGATGCCTTAGGAATCGGTGATGAGAGAGATGATGTGGTTGACATGGCTG-CC 282
|||||||||||||||| ||||| |||||||| |||||||||||| |||||| ||||| ||
Sbjct 239 ATTTGAAAGATGCCTTGGGAATTGGTGATGAAAGAGATGATGTGATTGACACGGCTGCCC 298
Query 283 GTATTCTATGAAGCGGCAA-TGGACCAAAACTTCACCAAAGGGCGCAGAGCTGAACTTGT 341
| ||||| |||| ||||| | || |||||||||||||||||||||||| ||||||||||
Sbjct 299 G-ATTCTTTGAAATGGCAACT-GAACAAAACTTCACCAAAGGGCGCAGAACTGAACTTGT 356
Query 342 ACAGTCTTCCTGTCTCTATTTGGCTTGCAG 371
|||||||||||||||||| ||| |||||||
Sbjct 357 ACAGTCTTCCTGTCTCTACTTGACTTGCAG 386
Score = 246 bits (133), Expect = 5e-64
Identities = 288/355 (81%), Gaps = 42/355 (12%)
Strand=Plus/Plus
Query 1323 AGCTGTGGCGAATTCTAGAAAGGAAAAGCGACGAAAACGTGCTGAGGAAGCTAAGAATGC 1382
|||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||| ||
Sbjct 1257 AGCTGTGGCGAAATCTAGAAAGGAAAAGCGACAAAAACGTGCTGAGGAAGCAAAGAACGC 1316
Query 1383 ACCTCCATCAGCTACAGCCACGGAAGCA--T--C-------TT---ATACAGAGACTCAG 1428
|||||| |||||||||||| ||||||| | | || | | ||||||||||
Sbjct 1317 GCCTCCACCAGCTACAGCCATGGAAGCAGTTCGCAGAATAGTTAAGAGAAAGAGACTCAG 1376
Query 1429 CGGGTTAATCAAC-ACCATGTTTTGGACGAGCTCTTGGATACT-AGCC--C----AA--C 1478
|| ||||||| | || |||||||||||||||| |||| | ||| | || |
Sbjct 1377 -TGG--AATCAACTGCGATTTTTTGGACGAGCTCTTAGATAATGTGCCAGCGGAGAAGTC 1433
Query 1479 ACAGAAGAAACCGAGAACCGAGACAGTAACGGagaagaagaaggaagagcatgagattgt 1538
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1434 ACAGAAGAAACCGAGAACCGAGACAGTTACAGAGAAGAAGAAGGAAGAGCATGAGATTGT 1493
Query 1539 tgaagatgaagaagatgaagaagaCTACGCAGCACCACACGCAGATGAGAACTTCTATGA 1598
|||||||||||||| | | | |||| || | | || |||||||||| ||||||||
Sbjct 1494 TGAAGATGAAGAAGC--A-GCA---TACG-AG-ATGA-ACACAGATGAGAAATTCTATGA 1544
Query 1599 AGACGAAGTGGAAGAGGAAGAG-AA-----TGGTTATGATTTTGGATTGTATTAA 1647
|||||||||||||||||||||| || ||||||||||||||||||||| |||
Sbjct 1545 AGACGAAGTGGAAGAGGAAGAGGAAGAGGATGGTTATGATTTTGGATTGTACTAA 1599
> Ahg317739 jgi|Araly1|317739|fgenesh1_pm.C_scaffold_3000755
Length=1803
Score = 569 bits (308), Expect = 2e-161
Identities = 750/951 (79%), Gaps = 79/951 (8%)
Strand=Plus/Plus
Query 370 AGCTACCTTCGAGTTAGCGTTTACGAGTTAGGTTCCGTGTACTTGCAACTCTGTGAAATG 429
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 424 AGCTACCTTCGAGTTAGCGTTTATGAGTTAGGTTCTGTGTACTTGCAACTCTGTGAAATG 483
Query 430 CTGTACCTTGTGCAAAA-CAAGAACTATGAGGAGCTTGTTGATCCTTCAATCTTCATTCC 488
|||||| ||| | | || ||| || ||||| |||||||||| |||||||| ||||| |
Sbjct 484 CTGTACATTGCGGATAATCAA-AATTATGAAAAGCTTGTTGACCCTTCAATTTTCAT-CG 541
Query 489 -TCGATTCACAAACAGCTTATTGAAAGGTGCACACGCTAAAGCAAAAGATGTCGCAAACA 547
||||||| |||||| |||||||||||| |||| |||||| | ||| | |||||
Sbjct 542 ATCGATTCTCAAACATCTTATTGAAAGGAACACATAATAAAGCT---GTTGT-GAAAACA 597
Query 548 CGGCTAAAAACATTATATCTAGTATGAAGAGAGATTGGATACAGACAGGCCGGAAACCAA 607
| ||| | ||||||| ||||||||||| |||||||||||||||| |||||||| || |
Sbjct 598 -G-CTATAGCCATTATAGCTAGTATGAAGCGAGATTGGATACAGACCGGCCGGAAGCCTA 655
Query 608 GTGGAATATGTGGAGCAGCAATTTACATGGCTGCACTTTCTCATGGTATCATGTACTCTA 667
|||||||||||||||||||| |||||| ||||| |||||||||||||||| || |||||
Sbjct 656 GTGGAATATGTGGAGCAGCACTTTACACAGCTGCCCTTTCTCATGGTATCAAGTGCTCTA 715
Query 668 GGGCAGACATTGCAAA-AGTTGTGCATATGTGTGAAGCAACAATAACCAAAAGATTGAAT 726
| |||| |||| ||| | |||||||||| ||||||||||| |||||||| |||||| |
Sbjct 716 AGTCAGATATTGTAAACA-TTGTGCATATATGTGAAGCAACTCTAACCAAACGATTGATT 774
Query 727 GAATTTGCTAATACCGAGGCTGGAAGTTTAACTGTTGATGAGCTTGATGAAAGCGAAGAG 786
|| |||| ||||| ||| |||||| ||||| |||||||||| || | || |||||
Sbjct 775 GAGTTTGGAAATACGGAGTCTGGAAATTTAAATGTTGATGAG----ATCACAGA-AAGAG 829
Query 787 ATAT-TGCGTAAA-GAAACTTTTACCCC-AAGACCAAATTCTGACAAAGGAGTAG-TGAA 842
| || | | |||| || ||| |||| || ||||| || |||||| || | ||
Sbjct 830 A-ATCT-CATAAAAGAT-CTTCTACCATGAA-ACCAACCTCAAACAAAG-AGGCGGTGCT 884
Query 843 CTGTAAACATAAGGATT-TAAAACGCTTT-GGTTATGGATTATGTAA-GAGCTG-TCACG 898
||||| ||| ||||| |||| | |||| ||||||||| ||||||| || ||| | |||
Sbjct 885 CTGTATGCATCAGGATAGTAAA-C-CTTTTGGTTATGGACTATGTAAAGA-CTGCT-ACG 940
Query 899 ACGATTTCATTATAAT-TT-CTGGTGGAGTTGTTGGTGGGTCGGATCCTCCTGCTTATC- 955
| |||||||| | ||| || |||||||| ||||||||||||| || |||||||||| ||
Sbjct 941 AAGATTTCAT-A-AATGTTTCTGGTGGACTTGTTGGTGGGTCCGACCCTCCTGCTT-TCC 997
Query 956 AGCGAGCAGAGAAAGAGAGAATGGAAAAAGCAGCTAGAGAAGAAAACGAGGGAGGAATTG 1015
|||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 998 AGCGCGCAGAGAATGAGCGAATGGAAAAAGCAGCTAGAGAAGAAAACGAGGGAGGAATTA 1057
Query 1016 GTAACTTAAACCACGATGAACAAGT-TA---A---T---G---TA--AGCAAAAGGGCaa 1060
||| | ||||||||||||||||| | || | | | || |||||||| | ||
Sbjct 1058 GTAGCCTAAACCACGATGAACAACTATATTCAGACTATTGCAGTATGAGCAAAAGCG-AA 1116
Query 1061 aaa-aaTGTTCGGAGAAAGGCGAAGGAGA-AACATATGGGGGTGAAAGA-CATGCTGAAT 1117
||| ||| ||| |||||||| ||| | | || | |||||| |||| || |||||||| |
Sbjct 1117 AAACAATTTTCTGAGAAAGGTGAAAAAAATAA-AGATGGGGATGAA-GAACATGCTGA-T 1173
Query 1118 A-TTCGGATGAATCAGACATCTGTTCGGACGA-C-GATGATTCTGAGGTGGAACATGT-T 1173
| |||||||||||| |||| || ||| ||| | | | |||| |||||| || || |
Sbjct 1174 ACTTCGGATGAATCTGACAACTTTTCTGAC-ATCAG-TGATGATGAGGTAGA---TGGCT 1228
Query 1174 CT-TCT-CGGTGAGGACGAAACGCGGT-TGAAGACAA-CGGCCTGGA-ATTTACAAAACA 1228
| || | ||||| ||||||| | | ||||| | | | |||| | | || ||
Sbjct 1229 ATATCAACAACGAGGAGGAAACGCACTAT-AAGACGATCA-CATGGACAGAAATGAA-CA 1285
Query 1229 AAGACTATCTTGAGGAGCAAGCAGAAAAGGAAGCAGCTCTGAAGGCTGCTA 1279
|||| ||||||||||||||||| | |||||||||||||||||||| ||||
Sbjct 1286 AAGATTATCTTGAGGAGCAAGCCGCTAAGGAAGCAGCTCTGAAGGCGGCTA 1336
> Ahg341076 jgi|Araly1|341076|fgenesh1_pg.C_scaffold_3000839
Length=3738
Score = 544 bits (294), Expect = 1e-153
Identities = 560/683 (82%), Gaps = 40/683 (6%)
Strand=Plus/Plus
Query 370 AGCTACCTTCGAGTTAGCGTTTACGAGTTAGGTTCCGTGTACTTGCAACTCTGTGAAATG 429
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 424 AGCTACCTTCGAGTTAGCGTTTATGAGTTAGGTTCTGTGTACTTGCAACTCTGTGAAATG 483
Query 430 CTGTACCTTGTGCAAAA-CAAGAACTATGAGGAGCTTGTTGATCCTTCAATCTTCATTCC 488
|||||| ||| | | || ||| || ||||| |||||||||| |||||||| ||||| |
Sbjct 484 CTGTACATTGCGGATAATCAA-AATTATGAAAAGCTTGTTGACCCTTCAATTTTCAT-CG 541
Query 489 -TCGATTCACAAACAGCTTATTGAAAGGTGCACACGCTAAAGCAAAAGATGTCGCAAACA 547
||||||| |||||| |||||||||||| |||| |||||| | ||| | |||||
Sbjct 542 ATCGATTCTCAAACATCTTATTGAAAGGAACACATAATAAAGCT---GTTGT-GAAAACA 597
Query 548 CGGCTAAAAACATTATATCTAGTATGAAGAGAGATTGGATACAGACAGGCCGGAAACCAA 607
| ||| | ||||||| ||||||||||| |||||||||||||||| |||||||| || |
Sbjct 598 -G-CTATAGCCATTATAGCTAGTATGAAGCGAGATTGGATACAGACCGGCCGGAAGCCTA 655
Query 608 GTGGAATATGTGGAGCAGCAATTTACATGGCTGCACTTTCTCATGGTATCATGTACTCTA 667
|||||||||||||||||||| |||||| ||||| |||||||||||||||| || |||||
Sbjct 656 GTGGAATATGTGGAGCAGCACTTTACACAGCTGCCCTTTCTCATGGTATCAAGTGCTCTA 715
Query 668 GGGCAGACATTGCAAA-AGTTGTGCATATGTGTGAAGCAACAATAACCAAAAGATTGAAT 726
| |||| |||| ||| | |||||||||| ||||||||||| |||||||| |||||| |
Sbjct 716 AGTCAGATATTGTAAACA-TTGTGCATATATGTGAAGCAACTCTAACCAAACGATTGATT 774
Query 727 GAATTTGCTAATACCGAGGCTGGAAGTTTAACTGTTGATGAGCTTGATGAAAGCGAAGAG 786
|| |||| ||||| ||| |||||| ||||| |||||||||| || | || |||||
Sbjct 775 GAGTTTGGAAATACGGAGTCTGGAAATTTAAATGTTGATGAG----ATCACAGA-AAGAG 829
Query 787 ATAT-TGCGTAAA-GAAACTTTTACCCC-AAGACCAAATTCTGACAAAGGAGTAG-TGAA 842
| || | | |||| || ||| |||| || ||||| || |||||| || | ||
Sbjct 830 A-ATCT-CATAAAAGAT-CTTCTACCATGAA-ACCAACCTCAAACAAAG-AGGCGGTGCT 884
Query 843 CTGTAAACATAAGGATT-TAAAACGCTTT-GGTTATGGATTATGTAA-GAGCTG-TCACG 898
||||| ||| ||||| |||| | |||| ||||||||| ||||||| || ||| | |||
Sbjct 885 CTGTATGCATCAGGATAGTAAA-C-CTTTTGGTTATGGACTATGTAAAGA-CTGCT-ACG 940
Query 899 ACGATTTCATTATAAT-TT-CTGGTGGAGTTGTTGGTGGGTCGGATCCTCCTGCTTATC- 955
| |||||||| | ||| || |||||||| ||||||||||||| || |||||||||| ||
Sbjct 941 AAGATTTCAT-A-AATGTTTCTGGTGGACTTGTTGGTGGGTCCGACCCTCCTGCTT-TCC 997
Query 956 AGCGAGCAGAGAAAGAGAGAATGGAAAAAGCAGCTAGAGAAGAAAACGAGGGAGGAATTG 1015
|||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 998 AGCGCGCAGAGAATGAGCGAATGGAAAAAGCAGCTAGAGAAGAAAACGAGGGAGGAATTA 1057
Query 1016 GTAACTTAAACCACGATGAACAA 1038
||| | |||||||||||||||||
Sbjct 1058 GTAGCCTAAACCACGATGAACAA 1080
> Ahg484042 jgi|Araly1|484042|fgenesh2_kg.5__34__AT2G01290.1
Length=1262
Score = 499 bits (270), Expect = 3e-140
Identities = 357/396 (90%), Gaps = 17/396 (4%)
Strand=Plus/Minus
Query 1870 GATTGATGATGATGACGACGATGTCAATGC-ATCCAAAACTCTGTCAAAAGAAAGTCAT- 1927
|||||||||||||| ||| ||||| |||| ||||||||||| || ||||| ||||||
Sbjct 1206 GATTGATGATGATGGTGACAATGTC-ATGCAATCCAAAACTCCGTGAAAAGTCAGTCATA 1148
Query 1928 TCATCCTCCTCACAGTGACATCATCCAAAACCTAATCTCATATCATCTAAACCAT--AG- 1984
|| ||||||||||||||||||||||| ||||| |||||||||||||||||| ||| ||
Sbjct 1147 TC-TCCTCCTCACAGTGACATCATCCGAAACC-AATCTCATATCATCTAAATCATAGAGC 1090
Query 1985 AGCAAACCATAATCCTCTGTCTCCTAATACATAA-AGGCCAAAATCAA-C-GAGAAGAGG 2041
|||||||||||||||||| |||||||||||| || ||||||||||||| | |||||| |
Sbjct 1089 AGCAAACCATAATCCTCTATCTCCTAATACAAAACAGGCCAAAATCAACCTAAGAAGA-G 1031
Query 2042 TGTGGTGTGTGTTTCAGTGTTTGTTCTTGATCTTAACACCAAGCTCACCTGCAATGATAA 2101
| ||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1030 -GAGGTGT-TGTGT---TGTTTGTGCTTGATCTTAACACCAAGCTCACCTGCAATGATAA 976
Query 2102 CAGTAGAAGCCATATCCAGAAACATCCCATGTTCCACTACTCCCGGTAGCCTCAGAATCG 2161
||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||
Sbjct 975 CAGTAGAAGCCATATCCAGAAACATTCCATGCTCCACTACTCCTGGAAGCCTCAGAATCG 916
Query 2162 CATCACTCACTGCTCCCAAATCTCCCATATCCTCTTCCACATGCATATCCACTATGTAAT 2221
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 915 CATCACTCACTGCTCCCAAATCTCCCATATCCTCTTCCAAATGCATATCCACTATGTAAT 856
Query 2222 TCCCATTGTCTGTCACAAAGGCCTTCCCTTTCTCTC 2257
||||||||||||||||||||| ||| ||||||||||
Sbjct 855 TCCCATTGTCTGTCACAAAGGGCTTACCTTTCTCTC 820
> Ahg918622 jgi|Araly1|918622|Al_scaffold_0357_1
Length=1263
Score = 472 bits (255), Expect = 7e-132
Identities = 543/673 (81%), Gaps = 55/673 (8%)
Strand=Plus/Plus
Query 370 AGCTACCTTCGAGTTAGCGTTTACGAGTTAGGTTCCGTGTACTTGCAACTCTGTGAAATG 429
||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| |||
Sbjct 424 AGCTACCTTCGTGTTAGCGTTTACGATTTAGGTTCTGTGTATTTGCAACTCTGTGACATG 483
Query 430 CTGTACCTT-GTGCAAAACAAGAACTATGAGGAGCTTGTTGATCCTTCAATCTTCATTCC 488
|| ||| || | ||||| | ||||| ||| | ||||||||||||||||| ||||||||
Sbjct 484 CTCTACATTACAG-AAAACCACAACTACGAGAAACTTGTTGATCCTTCAATTTTCATTCC 542
Query 489 TCGATTCACAAACA-GCTTATTGAAAGGTGCACA-CGCT---AAAG-C---AAAAGATGT 539
| |||||||||||| | ||||||||||||||||| || | |||| | || | ||
Sbjct 543 TGGATTCACAAACATG-TTATTGAAAGGTGCACACCG-TAAGAAAGTCGTGGGAACA-GT 599
Query 540 CGCAAACACGGCTAAAAACATTATATCTAGTATGAAGAGAGATTGGATACAGACAGGCCG 599
|| ||||||||| | |||||||| |||||||||||||||||||||| ||||| || ||
Sbjct 600 CGTGGACACGGCTACAGACATTATAGCTAGTATGAAGAGAGATTGGATGCAGACCGGACG 659
Query 600 GAAACCAAGTGGAATATGTGGAGCAGCAAT-T-TACATGGCTGCACTTTCTCATGGTATC 657
|||||||||||||||||||||||||||| | | |||| | ||||||||||||||||||||
Sbjct 660 GAAACCAAGTGGAATATGTGGAGCAGCACTCTATACA-G-CTGCACTTTCTCATGGTATC 717
Query 658 ATGTACTCTAGGGCAGACAT--TGCAAAAGTTGTGCATATGTGTGAAGCAACAATAACCA 715
| || ||||| | |||| || || |||| |||||||||| || |||||||| |||| |
Sbjct 718 AAGTGCTCTAAGACAGATATCGTG-AAAA-TTGTGCATATATGCGAAGCAACTCTAACTA 775
Query 716 AAAGATTGAATGAATTTGCTAATACCGAGGCTGGAAGTTTAACTGTTGATGAGCTT-GAT 774
||||||||| ||| |||| ||||||||||||| |||||| |||| ||||||||| | |
Sbjct 776 AAAGATTGATTGAGTTTGGAAATACCGAGGCTGCAAGTTTTACTGCTGATGAGCTCAG-T 834
Query 775 GAAAGC-GAA-GAGATATTGCGTAAA-GAAACT---TT---TACCCCAAG-A--CCAAAT 822
||| | ||| |||| | | ||| ||||| || || ||| | |||| |
Sbjct 835 AAAA-CTGAAAGAGAAA--GAAAAAAAGAAACGGAATTGCGTAGTAAAAGGAATCCAATT 891
Query 823 TCTGACAAAG--G-AGTAGTGAACTGTAAACAT-AAGGATT-TAAAACGCT-TTGGTTAT 876
||| |||||| | ||||||| ||||| ||| ||| ||| |||| | || ||| ||||
Sbjct 892 TCTTACAAAGAAGGAGTAGTGCTCTGTATGCATCAAG-ATTGTAAA-C-CTGTTGATTAT 948
Query 877 GGATTATGTAAGAGCTGTCACGACGATTTCATTATAA-TTTCTGGTGGAGTTGTTGGTGG 935
|||||||||||||||||| |||| || ||||| | || ||||||||||| ||| |||||
Sbjct 949 GGATTATGTAAGAGCTGTTACGATGAGTTCATGA-AAGTTTCTGGTGGACTTGAAGGTGG 1007
Query 936 GTCGGATCCTCCTGCTTATC-AGCGAGCAGAGAAAGAGAGAATGGA--AAAA-GCAGCTA 991
|||||||||||| || | || ||||||||||||||||||||||||| |||| || |||
Sbjct 1008 GTCGGATCCTCCCGCCT-TCCAGCGAGCAGAGAAAGAGAGAATGGAGGAAAAAGCTTCTA 1066
Query 992 GAGAAGAAAACGA 1004
|||||||||||||
Sbjct 1067 GAGAAGAAAACGA 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84979336595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5