BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01290.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484042 jgi|Araly1|484042|fgenesh2_kg.5__34__AT2G01290.1 1424 0.0
> Ahg484042 jgi|Araly1|484042|fgenesh2_kg.5__34__AT2G01290.1
Length=1262
Score = 1424 bits (771), Expect = 0.0
Identities = 921/991 (93%), Gaps = 20/991 (2%)
Strand=Plus/Plus
Query 394 ATGGCGCTTGCGTATGATCCTCTCTTCATTACATCGGACAAATCTTTGTCCGCCTTTGAT 453
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 228 ATGGCGCTTGCGTATGATCCTCTCTTCATTTCATCGGACAAATCTTTGTCCGCCTTTGAT 287
Query 454 GTTGCCTCTTCACCGCCTCAGCCCATGAATTTAACACAAGACGAGCTCAAACGTATCGCC 513
|||| | | |||||||| || ||||||| |||||| |||||| |||||||||| ||||||
Sbjct 288 GTTG-C-C-TCACCGCCACATCCCATGATTTTAACGCAAGACCAGCTCAAACGCATCGCC 344
Query 514 GCTTACAAAGCCGTGGAATTCGTCGAGTCCGGCATGGTTCTCGGTCTCGGAACCGGCTCC 573
|||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 345 GCTTACAAAGCCGTCGAATTCGTCGAATCCGGCATGGTCCTCGGCCTCGGAACCGGCTCC 404
Query 574 ACCGCCAAACACGCCGTCGACCGAATCGGCGAGCTTCTCCGTCAAGGCAAACTCGAGAAC 633
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 405 ACCGCCAAACACGCCGTCGACCGCATCGGCGAGCTTCTCCGTCAAGGCAAACTCGAGAAC 464
Query 634 ATCGTTGGTATACCAACGTCTAAGAAGACGCAGGAGCAGGCTCTGTCTCTCGGCATCCCT 693
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 465 ATCGTTGGTATACCAACCTCGAAGAAGACGCAGGAGCAGGCTCTGTCTCTCGGCATCCCT 524
Query 694 CTCTCTGATCTCGACGCACACCCTGTCATCGATCTCTCCATCGACGGCGCAGACGAGGTC 753
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 525 CTCTCTGATCTCGACGCACACCCTGTCATCGATCTCTCCATCGACGGCGCCGACGAGGTC 584
Query 754 GACCCTTTTCTCAACCTGGTAAAAGGCAGAGGAGGGTCTCTGCTTCGAGAGAAGATGATC 813
||||||| ||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 585 GACCCTTATCTCAACCTCGTGAAAGGCAGAGGAGGGTCTCTGCTTCGGGAGAAGATGATC 644
Query 814 GAAGGAGCTTCTAAGAAGTTTGTGGTGATTGTTGACGACTCCAAGATGGTGAAGCATATT 873
|||||||||||||||||||| ||||| || |||||||| ||||||||||||||||| ||
Sbjct 645 GAAGGAGCTTCTAAGAAGTTCGTGGTCATCGTTGACGAGTCCAAGATGGTGAAGCACATC 704
Query 874 GGTGGAAGCAAGCTTGCTCTTCCGGTGGAGATAGTGCCCTTTTGCTGGAAGTTCACGGCG 933
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 705 GGTGGAAGCAAGCTTGCTCTTCCGGTGGAGATAGTGCCCTTTTGCTGGAAATTCACGGCG 764
Query 934 GAGAAGCTCCGGAGTCTGCTGGAAGGATACGGGTGTGAAGCGAATCTTCGGTTGGGAGAG 993
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 765 GAGAAGCTCCGGAGTCTGCTGGAAGGATACGGGTGTGAAGCGAATCTCCGATTGGGAGAG 824
Query 994 AAAGGGAAGGCCTTTGTGACAGACAATGGGAATTACATAGTGGATATGCATGTGGAAGAG 1053
||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 825 AAAGGTAAGCCCTTTGTGACAGACAATGGGAATTACATAGTGGATATGCATTTGGAAGAG 884
Query 1054 GATATGGGAGATTTGGGAGCAGTGAGTGATGCGATTCTGAGGCTACCGGGAGTAGTGGAA 1113
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 885 GATATGGGAGATTTGGGAGCAGTGAGTGATGCGATTCTGAGGCTTCCAGGAGTAGTGGAG 944
Query 1114 CATGGGATGTTTCTGGATATGGCTTCTACTGTTATCATTGCAGGTGAGCTTGGTGTTAAG 1173
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 CATGGAATGTTTCTGGATATGGCTTCTACTGTTATCATTGCAGGTGAGCTTGGTGTTAAG 1004
Query 1174 ATCAAGAACAAACACTGAAACACACACCACACCTCTTCTC-G-TTGATTTTGGCCT-TTA 1230
|||||| ||||||| | ||| ||||| | | |||||| | ||||||||||||| ||
Sbjct 1005 ATCAAGCACAAACA---ACACA-ACACCTC-C-TCTTCTTAGGTTGATTTTGGCCTGTTT 1058
Query 1231 TGTATTAGGAGACAGAGGATTATGGTTTGCT-CT--ATGGTTTAGATGATATGAGATTAG 1287
|||||||||||| |||||||||||||||||| || ||| |||||||||||||||||| |
Sbjct 1059 TGTATTAGGAGATAGAGGATTATGGTTTGCTGCTCTATGATTTAGATGATATGAGATT-G 1117
Query 1288 GTTTTGGATGATGTCACTGTGAGGAGGATGA-ATGACTTTCTTTTGACAGAGTTTTGGAT 1346
|||| ||||||||||||||||||||||| || |||||| ||||| || |||||||||||
Sbjct 1118 GTTTCGGATGATGTCACTGTGAGGAGGA-GATATGACTGACTTTTCACGGAGTTTTGGAT 1176
Query 1347 -GCATTGACATCGTCGTCATCATCATCAATC 1376
|||| ||||| ||| ||||||||||||||
Sbjct 1177 TGCAT-GACATTGTCACCATCATCATCAATC 1206
Score = 122 bits (66), Expect = 5e-27
Identities = 174/219 (79%), Gaps = 36/219 (16%)
Strand=Plus/Plus
Query 24 tcttcttcttcttcgttcagtcttcacttt-cttt-tcttttctCCGCCACCACACAAAT 81
|||| ||||||||||| || ||| ||||| ||| |||||||||||||||||||||||
Sbjct 15 TCTTGTTCTTCTTCGTCCA--CTTTACTTTGTTTTATCTTTTCTCCGCCACCACACAAAC 72
Query 82 ACATTC-TTCATTCTTTGTAA----C----TT-TCACGCTATTCTTC--CTC---A-ATA 125
|||||| ||| |||||||||| | || |||||||||||||| ||| | |||
Sbjct 73 ACATTCTTTC-TTCTTTGTAAGTTGCATATTTCTCACGCTATTCTTCATCTCTATACATA 131
Query 126 T---------ATTCATTCGACCTCCTCTCTTCA--TT-CTTAATTTCTCAAAAATCTTAT 173
| ||||||||||||| |||| |||| || | ||||||||| |||||||||
Sbjct 132 TACACACACAATTCATTCGACCTTCTCTATTCATTTTCCCTAATTTCTC--AAATCTTAT 189
Query 174 CTTTCTCCCTCATTTTTCCCGTCGAGGGTTCCTTAATCT 212
||||| |||||||||||||||||||||||||||| ||||
Sbjct 190 CTTTC-CCCTCATTTTTCCCGTCGAGGGTTCCTTCATCT 227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5