BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G01300.1 Length=673 Score E Sequences producing significant alignments: (Bits) Value Ahg935835 jgi|Araly1|935835|scaffold_500026.1 612 1e-174 > Ahg935835 jgi|Araly1|935835|scaffold_500026.1 Length=507 Score = 612 bits (331), Expect = 1e-174 Identities = 443/495 (89%), Gaps = 15/495 (3%) Strand=Plus/Plus Query 36 ACAATGGAAGCTACACTGTTTTCTTCACCGCCTTCGATTTCACCACTCCGATTCCATCCA 95 |||||||| ||||||||| ||||||| ||| |||||||||||||| |||||||||||||| Sbjct 20 ACAATGGAGGCTACACTGCTTTCTTCGCCGGCTTCGATTTCACCATTCCGATTCCATCCA 79 Query 96 CTGGTTCTTTCTCAAAGAGCCATCA-TTC-C-CAAGAAGAAGAAGATGACGATGAGAGTC 152 |||||||||||||||||| | | || ||| | |||||||||| |||||||||||| ||| Sbjct 80 CTGGTTCTTTCTCAAAGAACAACCACTTCGCAGAAGAAGAAGACGATGACGATGAGCGTC 139 Query 153 TCTGCTGCGGCGTCATCAGGAAAAGATCATTACTATGGAGGAGGAAGATTGGTGGACGAG 212 |||||| || | |||||||| |||||||| |||||||||||||||||||||||| Sbjct 140 TCTGCT------TC-T--GGAAAAGACCATTACTACGGAGGAGGAAGATTGGTGGACGAG 190 Query 213 AACATGATCGTTCTTAGGAAACGTATCCACGAGATGAAGATGGTCGAGCGTAACTACGAG 272 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 191 AACATGATCGTTCTCAGGAAACGTATCCACGAGATGAAGATGGTTGAGCGTAACTACGAG 250 Query 273 CCTCCTTCTCACTGGATGGATTGGGAGAAACGTTTTTACAACAGCTACGACTCTGTTATC 332 ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 251 CCTCCTTCTCACTGGATGGATTGGGAGAAACGTTTCTACAGCAGCTACGACTCTGTTATC 310 Query 333 TGCGACTCCGTTGGTCTTCTTCAGAGCTTCCTCATGAACTCTCGACCCA-CTGTAGCAAT 391 ||||||||||||||||||||||||||||| |||||||| ||||| |||| | |||||||| Sbjct 311 TGCGACTCCGTTGGTCTTCTTCAGAGCTTGCTCATGAATTCTCGCCCCAAC-GTAGCAAT 369 Query 392 CGCGACGCTGCTTTTCCTCCTCGTCAGCGTTCCCGTTTCCTCCACGGTGATCGCGTTTCG 451 ||| |||||||||||||||||||||||| |||||||||| ||||| | |||||||||||| Sbjct 370 CGCAACGCTGCTTTTCCTCCTCGTCAGCATTCCCGTTTCATCCACCGCGATCGCGTTTCG 429 Query 452 CCTTATTGATCTTTTGCATTGGCTTCTCGCAGCCGCAACATCAGCCCACGTGGCTTGATC 511 ||| |||| || || |||||||||||||| | |||||||||||||| |||| | ||||| Sbjct 430 TCTTCTTGACCTCTTCCATTGGCTTCTCGCCGTCGCAACATCAGCCCTCGTGACCTGATC 489 Query 512 TCATA-TTTTTCTTT 525 |||| ||||| ||| Sbjct 490 TCATTCTTTTTTTTT 504 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24703650216 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5