BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01300.1
Length=673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935835 jgi|Araly1|935835|scaffold_500026.1 612 1e-174
> Ahg935835 jgi|Araly1|935835|scaffold_500026.1
Length=507
Score = 612 bits (331), Expect = 1e-174
Identities = 443/495 (89%), Gaps = 15/495 (3%)
Strand=Plus/Plus
Query 36 ACAATGGAAGCTACACTGTTTTCTTCACCGCCTTCGATTTCACCACTCCGATTCCATCCA 95
|||||||| ||||||||| ||||||| ||| |||||||||||||| ||||||||||||||
Sbjct 20 ACAATGGAGGCTACACTGCTTTCTTCGCCGGCTTCGATTTCACCATTCCGATTCCATCCA 79
Query 96 CTGGTTCTTTCTCAAAGAGCCATCA-TTC-C-CAAGAAGAAGAAGATGACGATGAGAGTC 152
|||||||||||||||||| | | || ||| | |||||||||| |||||||||||| |||
Sbjct 80 CTGGTTCTTTCTCAAAGAACAACCACTTCGCAGAAGAAGAAGACGATGACGATGAGCGTC 139
Query 153 TCTGCTGCGGCGTCATCAGGAAAAGATCATTACTATGGAGGAGGAAGATTGGTGGACGAG 212
|||||| || | |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 140 TCTGCT------TC-T--GGAAAAGACCATTACTACGGAGGAGGAAGATTGGTGGACGAG 190
Query 213 AACATGATCGTTCTTAGGAAACGTATCCACGAGATGAAGATGGTCGAGCGTAACTACGAG 272
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 191 AACATGATCGTTCTCAGGAAACGTATCCACGAGATGAAGATGGTTGAGCGTAACTACGAG 250
Query 273 CCTCCTTCTCACTGGATGGATTGGGAGAAACGTTTTTACAACAGCTACGACTCTGTTATC 332
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 251 CCTCCTTCTCACTGGATGGATTGGGAGAAACGTTTCTACAGCAGCTACGACTCTGTTATC 310
Query 333 TGCGACTCCGTTGGTCTTCTTCAGAGCTTCCTCATGAACTCTCGACCCA-CTGTAGCAAT 391
||||||||||||||||||||||||||||| |||||||| ||||| |||| | ||||||||
Sbjct 311 TGCGACTCCGTTGGTCTTCTTCAGAGCTTGCTCATGAATTCTCGCCCCAAC-GTAGCAAT 369
Query 392 CGCGACGCTGCTTTTCCTCCTCGTCAGCGTTCCCGTTTCCTCCACGGTGATCGCGTTTCG 451
||| |||||||||||||||||||||||| |||||||||| ||||| | ||||||||||||
Sbjct 370 CGCAACGCTGCTTTTCCTCCTCGTCAGCATTCCCGTTTCATCCACCGCGATCGCGTTTCG 429
Query 452 CCTTATTGATCTTTTGCATTGGCTTCTCGCAGCCGCAACATCAGCCCACGTGGCTTGATC 511
||| |||| || || |||||||||||||| | |||||||||||||| |||| | |||||
Sbjct 430 TCTTCTTGACCTCTTCCATTGGCTTCTCGCCGTCGCAACATCAGCCCTCGTGACCTGATC 489
Query 512 TCATA-TTTTTCTTT 525
|||| ||||| |||
Sbjct 490 TCATTCTTTTTTTTT 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24703650216
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5