BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01320.3
Length=2662
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484044 jgi|Araly1|484044|fgenesh2_kg.5__36__AT2G01320.2 3504 0.0
> Ahg484044 jgi|Araly1|484044|fgenesh2_kg.5__36__AT2G01320.2
Length=2428
Score = 3504 bits (1897), Expect = 0.0
Identities = 2175/2305 (94%), Gaps = 36/2305 (2%)
Strand=Plus/Plus
Query 1 GTTTGGAGCCTTGGTTGGTTCTTACTTGTTACTTTGCTTCGTACGGATTTGAAGGCTTTA 60
|||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1 GTTTGGAGCCTTGGTTGGTTCTTACTTG-TACTTTGCTTCGTAC---------GGCTTTA 50
Query 61 CCTCACCGGAGCTTCCAAGTAGAAGACGACACTGAGTCACTGACACAGGG--ATACAAAT 118
||||||||||||||||||| | ||| | || || ||||||||||||| ||||| ||
Sbjct 51 CCTCACCGGAGCTTCCAAG--G-AGA--AGAC-GA--CACTGACACAGGGATATACAGAT 102
Query 119 TATGGCGCCTTTTGGCGGGAAATCTTTAGCGGACGTTGTTTCTGGCATCGGAGGGAATGG 178
||||||||||||||||||||||||| ||| ||| | ||||||||||||||||||||||||
Sbjct 103 TATGGCGCCTTTTGGCGGGAAATCTGTAGTGGATGCTGTTTCTGGCATCGGAGGGAATGG 162
Query 179 TGTT-GGCGGGGCTCTGGCTGCGGTGGCCGCCGCTCTGTTGGTCCGCCTCTTCGCTGGAC 237
||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 163 AGTTGGGC-GGGCTCTGGCTGCGGTGGCCGCCGCTCTGTTGGTCCGCCTCTTTGCTGGAC 221
Query 238 CTGGCATCGCTCTCTTACCTGAAGACGAAGCTGAAGATGATTACGCTGAGACGGAAGACG 297
| |||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 222 CCGGCATCGCCCTCTTACCTGAAAATGAAGCTGACGATGATTACGCTGAGACGGAAGACG 281
Query 298 GTGGTGGTGA----T-T-C------AATTCGTCCGGTGACAATCCGTTGGAGGAACATCA 345
|||||||||| | | | |||||||||||||||||||||||||||||||||||
Sbjct 282 GTGGTGGTGATTCTTCTCCGGGGAAAATTCGTCCGGTGACAATCCGTTGGAGGAACATCA 341
Query 346 CCTGCTCGCTCTCCGATAAGTCCTCCAAATCGGTGAGGTTTTTGTTGAAAAATGTATCCG 405
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 342 CCTGCTCGCTCTCCGATAAGTCCTCCAAATCGGTGCGGTTTTTGTTGAAAAATGTCTCTG 401
Query 406 GAGAAGCAAAACCTGGGAGGTTGCTAGCGATTATGGGTCCTTCTGGTTCTGGGAAAACAA 465
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 402 GAGAAGCAAAACCTGGGAGGTTGCTAGCGATAATGGGTCCTTCTGGATCTGGGAAAACCA 461
Query 466 CATTGCTCAATGTTTTAGCAGGACAGCTTAGTTTATCTCCACGTTTGCATTTGTCAGGTC 525
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 462 CATTGCTCAATGTTTTAGCTGGACAGCTTAGTTCATCTCCACGTTTGCATTTGTCAGGTC 521
Query 526 TCTTGGAGGTTAATGGCAAACCGAGCTCTAGCAAAGCTTATAAGCTTGCGTTTGTGAGAC 585
|||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||| ||||
Sbjct 522 TCTTGGAGGTTAATGGGAAACCAAGCTCCAGCAGAGCTTATAAGCTTGCGTTTGTCAGAC 581
Query 586 AGGAGGATCTCTTCTTTTCTCAGTTAACTGTCAGGGAAACACTTTCTTTTGCAGCCGAGC 645
|||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 582 AGGAGGATCTCTTCTTCTCGCAGTTGACTGTCAGGGAAACACTTTCTTTCGCAGCCGAGC 641
Query 646 TTCAGCTTCCGGAGATCTCTTCTGCTGAGGAGAGGGATGAGTATGTCAACAACCTCTTGC 705
||||||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||
Sbjct 642 TTCAGCTTCCGGAGATCTCTTCTCCTGAGCAGAGGGATGACTATGTGAACAACCTCTTGC 701
Query 706 TCAAACTTGGTCTGGTCAGCTGTGCAGATTCATGTGTTGGCGATGCTAAAGTTCGTGGGA 765
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 702 TCAAACTTGGTCTGGTCAGCTGTGCAGATTCGTGTGTTGGCGATGCAAAAGTTCGTGGCA 761
Query 766 TCAGCGGTGGAGAGAAGAAGCGGCTGTCACTTGCGTGTGAATTGATCGCTAGTCCCTCTG 825
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 TCAGCGGTGGAGAAAAGAAGCGGCTGTCACTTGCGTGTGAATTGATCGCTAGTCCCTCTG 821
Query 826 TCATATTTGCTGATGAACCTACCACTGGGCTTGATGCCTTCCAGGCTGAGAAAGTGATGG 885
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 822 TCATATTTGCTGATGAACCCACAACTGGGCTTGATGCCTTCCAGGCTGAGAAAGTGATGG 881
Query 886 AGACATTGCAAAAGCTTGCACAGGATGGACATACTGTGATCTGCTCCATACACCAGCCTA 945
| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 882 AAACATTGCAAAAGCTTGCACAAGATGGACACACTGTGATCTGCTCCATTCACCAGCCTA 941
Query 946 GAGGTTCGGTGTACGCTAAATTTGACGACATTGTGTTACTTACAGAAGGAACTCTAGTCT 1005
||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 942 GAGGTTCGGTGTATGCTAAATTTGACGACATTGTGTTACTTACAGAAGGAGCTTTAGTCT 1001
Query 1006 ATGCCGGCCCTGCAGGAAAAGAACCTCTGACATATTTCGGGAACTTCGGGTTCCTTTGCC 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 ATGCCGGCCCTGCAGGAAAAGAACCTCTGACATATTTCGGGAACTTCGGGTTCCTTTGCC 1061
Query 1066 CTGAGCATGTGAACCCTGCTGAGTTTCTTGCTGATCTTATATCTGTTGACTATAGCTCTT 1125
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1062 CAGAGCATGTAAACCCTGCTGAGTTTCTTGCTGATCTTATCTCTGTTGACTATAGCTCTT 1121
Query 1126 CGGAAACGGTCTACTCTTCGCAGAAGAGAGTACATGCTCTTGTTGATGCATTCTCCCAGC 1185
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1122 CGGAAACTGTCTACTCTTCGCAGAAGAGAGTACATGCTCTTGTTGATGCGTTCTCCCAGC 1181
Query 1186 GTTCATCATCGGTTCTTTATGCCACTCCCCTCAGCATGAAAGAAGAAACAAAGAACGGCA 1245
|||||||||| ||||||||||| ||||||||| |||| ||||| |||||||||||| |||
Sbjct 1182 GTTCATCATCTGTTCTTTATGCTACTCCCCTCGGCATAAAAGATGAAACAAAGAACAGCA 1241
Query 1246 TGAGACCTCGCAGAAAAGCCATTGTTGAGAGAACAGATGGTTGGTGGAGGCAGTTTTTCT 1305
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1242 TGAGACCTCGCAGAAAAGCCTTTGTTGAGAGAAAAGATGGTTGGTGGAGGCAGTTTTTCT 1301
Query 1306 TGCTGCTTAAACGTGCATGGATGCAGGCTTCTCGGGATGGGCCAACAAACAAAGTCCGTG 1365
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1302 TGCTGCTTAAGCGTGCATGGATGCAGGCTTCTCGAGATGGGCCAACAAACAAAGTCCGTG 1361
Query 1366 CAAGAATGTCTGTTGCATCTGCTGTGATATTTGGGTCTGTTTTCTGGAGAATGGGGAAGT 1425
||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |
Sbjct 1362 CAAGAATGTCTGTTGCATCAGCTCTGATATTTGGGTCCGTTTTCTGGAGAATGGGGAAAT 1421
Query 1426 CTCAGACGTCAATTCAGGACAGAATGGGTTTGCTTCAGGTTGCTGCAATAAACACGGCAA 1485
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 CCCAGACATCAATTCAGGACAGAATGGGTTTGCTTCAGGTTGCTGCAATAAACACGGCAA 1481
Query 1486 TGGCAGCTCTTACAAAGACAGTTGGTGTCTTTCCTAAAGAGCGTGCCATAGTGGATAGAG 1545
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1482 TGGCAGCTCTCACAAAGACAGTTGGTGTCTTTCCTAAAGAGCGTGCCATTGTGGATAGAG 1541
Query 1546 AACGATCCAAAGGGTCTTATTCTTTAGGCCCTTACCTGCTCTCCAAAACAATAGCTGAAA 1605
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 AACGGTCCAAAGGGTCTTATTCTTTAGGCCCTTACCTGCTCTCCAAAACAATAGCTGAAA 1601
Query 1606 TTCCTATTGGAGCTGCATTTCCTTTGATGTTTGGTGCTGTACTATACCCCATGGCTCGCC 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1602 TTCCTATTGGAGCTGCATTTCCTTTGATGTTTGGTGCTGTACTATACCCCATGGCTCGCC 1661
Query 1666 TTAATCCCACTTTGTCAAGATTTGGAAAATTTTGTGGGATAGTGACTGTGGAGTCATTTG 1725
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1662 TTAATCCCACTTTGTCAAGATTTGGAAAATTTTGTGGGATAGTGACTGTGGAGTCTTTTG 1721
Query 1726 CTGCGTCTGCAATGGGTCTAACTGTTGGAGCTATGGTCCCAAGCACAGAAGCTGCAATGG 1785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722 CTGCGTCTGCAATGGGTCTAACTGTTGGAGCTATGGTCCCAAGCACAGAAGCTGCAATGG 1781
Query 1786 CCGTGGGACCATCTCTCATGACAGTTTTCATCGTATTTGGAGGTTACTATGTCAATGCAG 1845
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1782 CTGTAGGACCATCTCTCATGACAGTTTTCATCGTGTTTGGAGGTTACTATGTCAATGCAG 1841
Query 1846 ACAACACCCCAATCATCTTCCGTTGGATTCCTCGTGCTTCATTGATCAGATGGGCCTTCC 1905
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 ACAACACCCCAATTATCTTCCGTTGGATTCCTCGTGCTTCATTGATCAGATGGGCCTTCC 1901
Query 1906 AGGGACTCTGTATCAACGAATTCAGCGGCCTCAAGTTTGATCATCAGAACACTTTTGACG 1965
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 AGGGACTCTGCATCAACGAATTCAGCGGCCTCAAGTTTGATCATCAGAACACTTTTGACG 1961
Query 1966 TCCAAACTGGAGAACAGGCGCTAGAACGACTGTCGTTTGGAGGAAGGCGGATAAGGGAGA 2025
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1962 TCCAAACTGGAGAACAGGCGCTAGAACGACTGTCGTTTGGAGGAAGGCGTATAAGGGAGA 2021
Query 2026 CGATAGCAGCTCAAAGCCGGATTCTGATGTTCTGGTATAGCGCCACGTACCTTCTCCTGG 2085
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2022 CGATAGCAGCTCAAAGCCGGATTCTGATGTTCTGGTATAGCGCAACGTACCTTCTCCTGG 2081
Query 2086 AGAAAAACAAGCCAAAGTATCAAAAGCTAGAGCTTCTTGTTGACAATGGAGAAACTG-GT 2144
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 2082 AGAAAAACAAGCCAAAGTATCAAAAGCTGGAGCTTCTTGTTGACAATGGAGAAACTGAG- 2140
Query 2145 AATTCAGGAGTCCAACTGGATAAAGCAGAGGTTGATCAAACGGAGAAACCTGAAGACGAT 2204
||| ||||||| || |||||| ||||||||||||||||| ||||| |||||||||| |||
Sbjct 2141 AATCCAGGAGTGCAGCTGGATGAAGCAGAGGTTGATCAAGCGGAGGAACCTGAAGATGAT 2200
Query 2205 GATATCAATCAACCACTTGACGATCAAAATCAAACATCGGATTCGGATGATGAGCTTGAC 2264
|||||||| || |||||| | |||||||||||| ||||||||||||| ||||||||||||
Sbjct 2201 GATATCAAGCAGCCACTTAAGGATCAAAATCAAGCATCGGATTCGGAAGATGAGCTTGAC 2260
Query 2265 GAAATCCGTCCCTTTGTCCTCGAAG 2289
|||||||||||||||||||| ||||
Sbjct 2261 GAAATCCGTCCCTTTGTCCTTGAAG 2285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100405885820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5