BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01330.1
Length=2079
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935837 jgi|Araly1|935837|scaffold_500028.1 2272 0.0
> Ahg935837 jgi|Araly1|935837|scaffold_500028.1
Length=1948
Score = 2272 bits (1230), Expect = 0.0
Identities = 1387/1465 (95%), Gaps = 2/1465 (0%)
Strand=Plus/Plus
Query 496 ATGGGACTCTGGCAATACAATGGGGGATTTTGATGGCCATTCTCGTAGGGTTTTGAGTTG 555
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 485 ATGGGACTCTGGCAATACAATGGGGGATTTTGATGGCCATTCTCGTAGGGTTCTGAGTTG 544
Query 556 TGCCTTCAAGCCAACGAGACCTTTCCGAATTGCCACATGCGGTGAAGACTTCTTGGTTAA 615
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 545 TGCCTTCAAGCCAACGCGACCTTTCCGAATCGCCACATGCGGTGAAGACTTCTTGGTTAA 604
Query 616 CTTTTATGATGGACCACCTTTTAAGTTTCACTCTTCTCACAGGGAGCATTCCAACTTCGT 675
|||||| || || |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 605 CTTTTACGACGGTCCACCTTTTAAGTTTCACTCCTCTCACAGGGAACATTCCAACTTCGT 664
Query 676 CAACTGCATCAGATATTCACCTGATGGTACTAAATTCATTACCGTAAGCTCTGACAAAAA 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 CAACTGCATCAGATATTCACCTGATGGTACTAAATTCATTACCGTAAGCTCTGACAAAAA 724
Query 736 GGGTATGATTTACGATGGCAAGACTGGAGATAAAGTTGGAGAATTGGCCTCAGAAGATGG 795
||||||||||||||||||||| ||||| |||||| |||||||| ||||||||||||||||
Sbjct 725 GGGTATGATTTACGATGGCAAAACTGGCGATAAAATTGGAGAACTGGCCTCAGAAGATGG 784
Query 796 TCACAAAGGCAGTATCTACGCTGTTAGCTGGAGTCCTGACAGCAAACGGGTGCTTACTGT 855
||||||||||| |||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 785 GCACAAAGGCAGCATCTACGCTGTTAGCTGGAGCCCCGACAGCAAACGGGTGCTCACTGT 844
Query 856 GTCTGCTGATAAGTCTGCCAAAGTATGGGAGGTAGCTGAAGATGGAACTATTGGCTCTGT 915
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 845 CTCTGCTGATAAGTCTGCCAAGGTATGGGAGGTAGCTGAAGATGGAACTGTTGGCTCTGT 904
Query 916 AATTAAGACATTGTCGTTTATGGAATCTGGTGGAGCAGAAGACATGCTTGTGGGATGTCT 975
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 AATTAAAACATTGACGTTTATGGAATCTGGTGGAGCAGAAGACATGCTTGTGGGATGTCT 964
Query 976 TTGGCAGAATGATCATCTCATTACCGTGTCTCTTGGCGGTACTATGTCCTTGTTCTCTGC 1035
||||||||| |||||||||||||| ||||||||||||||||| |||||| | ||||||||
Sbjct 965 TTGGCAGAACGATCATCTCATTACTGTGTCTCTTGGCGGTACCATGTCCCTCTTCTCTGC 1024
Query 1036 AGATGATATGGATAAGCCTCCCTTGCTGTTATCTGGACATATTAAGAACGTCACTTCTTT 1095
||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||
Sbjct 1025 AGATGATATGGATAAGCCTCCCTTGCTTTTATCTGGGCATATAAAGAATGTCACGTCTTT 1084
Query 1096 GGCTGTTCTTGGGGAAAACCAGAAGACGATTCTGTCTTGTAGCTATGATGGTCTCATTGT 1155
|||||||||||| | ||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 1085 GGCTGTTCTTGGAGCAAACCAGAAGACGATTCTGTCCTGTAGCTATGACGGTCTCATAGT 1144
Query 1156 CAAATGGCTAAAAGGGGTTGGGTACAGTTGCAAGTTACAAATGAAAGACACCAAAATCAA 1215
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 CAAATGGCTACAAGGGGTTGGGTACAGTTGCAAGTTACAAATGAAAGACACCAAAATCAA 1204
Query 1216 GCGATTAGCGGCTACTGAATCTAGCATTTTCATATCTGGATATGATAATATGGTTTGGAG 1275
||||||||||||||||||||||||||||||| |||| |||| |||||| | ||| |||||
Sbjct 1205 GCGATTAGCGGCTACTGAATCTAGCATTTTCCTATCCGGATTTGATAACAAGGTGTGGAG 1264
Query 1276 AATTCCTTTAACCGACAACGGATATGGAGCTGCAGAACATGTCGATATAGGCCATCAGCC 1335
|||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 1265 AATTCCATTAACCGACAACGAATTTGGAGCTGCAGCACATGTCGATATAGGCCATCAGCC 1324
Query 1336 TCTGGACATAAGCATAGCCGTTGATTCTCCCGAAGCCACAGCACTAGTCTCGTTTGATTC 1395
||||||||||||||||||||||||||| || ||| ||||| |||||||||||||||||||
Sbjct 1325 TCTGGACATAAGCATAGCCGTTGATTCGCCAGAATCCACATCACTAGTCTCGTTTGATTC 1384
Query 1396 CGGAGTTGTATTGCTCAATGGTCTGAACATTTTGAGCAAGATCGATTTGGGTTTTGCTGT 1455
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1385 CGGAGTTGTATTGCTCAATGGTCTGAACATTTTGAGCAAGATCGATCTGGGTTTTGCTGT 1444
Query 1456 GGCAGCCTCTGTGATCTCACCTGACGGGAAAGAAGCGATTGTAGGAGGGCAAGACGGGAA 1515
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 GGCAGCCTCCGTGATCTCACCTGACGGGAAAGAAGCGATTGTAGGAGGGCAAGACGGGAA 1504
Query 1516 GTTACACATATACTCAGTCTCAGGGGACAACAACCTCAAAGAGGAAGCAGTCCTGGAGAA 1575
||||||||||||||||||||||||||| |||| ||| ||||||||||| || ||||||||
Sbjct 1505 GTTACACATATACTCAGTCTCAGGGGATAACAGCCTGAAAGAGGAAGCCGTGCTGGAGAA 1564
Query 1576 ACACAGAGGTGCTTTGACAGTGATACGTTACTCTCCTGACTTAACAATGTTTGCTTCTGG 1635
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1565 ACACAGAGGTGCTTTGACAGTAATACGTTACTCTCCTGACTTAACAATGTTTGCTTCTGG 1624
Query 1636 TGATGCCAACCGCGAAGCTGTAGTCTGGGATCGCGAGACCAAACAGGTGAAGCTAAACAA 1695
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1625 TGATGCCAACCGCGAAGCTGTAGTCTGGGATCGGGAGACCAAACAGGTGAAGCTAAACAA 1684
Query 1696 CATGTTGTTCCACACGGCTCGTATAAACAGCTTGGCATGGTCACCAAACAACAAGATGGT 1755
|||| ||||||||||||||||||||||| ||||||||||||||||||||| || ||||||
Sbjct 1685 CATGCTGTTCCACACGGCTCGTATAAACTGCTTGGCATGGTCACCAAACAGCACGATGGT 1744
Query 1756 AGCCACAGGGTCCATAGACACTTGCGTCATTGTATATGAAGTGGACAAGCCAGCTTCAAG 1815
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1745 AGCCACAGGGTCCATAGACACTTGCGTCATTGTATATGAAGTGGATAAGCCAGCTTCAAG 1804
Query 1816 TCGCATAACCG-CAAGAAACGCTCATCTCGGTGGAGTGAACGCAGTCGCCTTCATTGATG 1874
||||||||||| || ||||||| || || || ||||| || || |||| |||||||||||
Sbjct 1805 TCGCATAACCGTCA-GAAACGCGCACCTGGGCGGAGTTAATGCTGTCGGCTTCATTGATG 1863
Query 1875 ATTGCACCGTAGCAAGTTCCGGAGAAGACGCTTCCGTTCGTTTGTGGCATATCGAACCTC 1934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1864 ATTGCACCGTAGCAAGTTCCGGAGAAGACGCTTCCGTTCGTTTGTGGCATATCGAACCTC 1923
Query 1935 AGTGACTTGTCGTTATAAGCttttt 1959
|||||||||| ||||||| ||||||
Sbjct 1924 AGTGACTTGTTGTTATAACCTTTTT 1948
Score = 628 bits (340), Expect = 4e-179
Identities = 385/407 (95%), Gaps = 2/407 (0%)
Strand=Plus/Plus
Query 96 ATTCCACGATGGCGAAACTCCTCGAGACCTTTCCTTGTGTTCCCTCCACCGAACGAGGCC 155
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 13 ATTCTACGATGGCGAAACTCCTCGAGACCTTTCCTTGTGTTCCGTCCACCGAACGAGGCC 72
Query 156 GCGGCATTTTGATCTCCGGCGATTCCAAATCCGACACCATTCTCTACTGCAACGGCCGCT 215
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 73 GTGGCATTTTGATCTCCGGCGACCCCAAATCCGACACCATTCTCTACTGCAACGGCCGCT 132
Query 216 CTGTCTTCATCCGGAGCCTCCGCCAACTCCAAGACGTCCAAGTTTACGGCGAACATGGCT 275
||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||
Sbjct 133 CTGTCTTCATCCGGAGCCTCCGCCAACCCCAAGACGTCCATGTTTACGGTGAACATGGCT 192
Query 276 ATGCTGTTACCGTTGCTCGCTACTCTCCCAACGGCGAATGGATCGCTTCCGCTGATGTCT 335
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 193 ATGCTGTCACCGTTGCTCGCTACTCTCCCAACGGCGAGTGGATCGCTTCCGCTGATGTCT 252
Query 336 CTGGTACTGTTCGCGTTTGGGGAACGCACAACGGCTTCGTGCTGAAGAACGAGTTCAGAG 395
||||||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||||
Sbjct 253 CTGGTACCGTTCGCGTTTGGGGAACGCACAACGACTTCGTGCTCAAGAACGAATTCAGAG 312
Query 396 TCCTTGCTGGTCGTG-TCGATGATCTCCAATGGTCTTTCGATGGACTTCGAATTGTTGCT 454
|||| |||||||| | |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 313 TCCTCGCTGGTCG-GATCGATGATCTCCAATGGTCTTTCGATGGGCTTCGAATTGTTGCT 371
Query 455 TCCGGCGATGGAAAAGGCAAATCTCTTGTTCGATCCTTCGCATGGGA 501
|||||||||||||| ||||||||| |||||||| ||||||||| |||
Sbjct 372 TCCGGCGATGGAAAGGGCAAATCTTTTGTTCGAGCCTTCGCATTGGA 418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78199272985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5