BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01350.1
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484052 jgi|Araly1|484052|fgenesh2_kg.5__44__AT2G01350.1 1818 0.0
> Ahg484052 jgi|Araly1|484052|fgenesh2_kg.5__44__AT2G01350.1
Length=1240
Score = 1818 bits (984), Expect = 0.0
Identities = 1173/1259 (93%), Gaps = 34/1259 (3%)
Strand=Plus/Plus
Query 45 TCTACAATGATCTCTGTCTCTCGATTCTTGTCGCCTCAATTCTACGCAATTCCAAGGAGC 104
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TCTACAATGATCTCTGTCTCTCGATTCTTGTCGCCTCAATTCTACGCAATTCAAAGGAGC 60
Query 105 TTCGTAAAAATGTCTGCTTCAGCGACTCAAACGGCCGGAGAAGTTTCAATGGGGATCAAG 164
||||| |||||||||||||| ||||||||||||||||||||| |||| |||| |||||||
Sbjct 61 TTCGTGAAAATGTCTGCTTCTGCGACTCAAACGGCCGGAGAAATTTCCATGGCGATCAAG 120
Query 165 CCTCCTTCACA-CCCTACTTACGATTTGAAAGCTGTTATCAAACTAGCCCTAGCTGAAGA 223
||||||||||| ||| ||||||||||||||||| || |||||| ||||||||||||||||
Sbjct 121 CCTCCTTCACATCCC-ACTTACGATTTGAAAGCCGTCATCAAATTAGCCCTAGCTGAAGA 179
Query 224 TGCTGGTCATACAGGAGATGTAACGTGTATGGCTACGATACCGTTTGATATGGAAGTGGA 283
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 TGCTGGTCATACAGGAGATGTAACGTGTATGGCTACGATACCGTTTGATTTGGAAGTGGA 239
Query 284 AGCTTATTTCTTGGCCAAGGAAGATGGTATTGTTGCTGGAGTTGCTCTTGCTGACATGAT 343
||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 240 AGCTTATTTCTTGGCTAAGGAAGATGGTATTGTCGCTGGAATTGCTCTTGCTGACATGAT 299
Query 344 TTTTGAACATGTTGATCCCTCCTTGAAGGTTGAATGGATGCGAAAGGATGGAGATTATGT 403
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 TTTTGAACAAGTTGATCCCTCCTTGAAGATTGAATGGATGCGAAAGGATGGAGATTATGT 359
Query 404 TCATAAAGGATTGAAGTTTGGGAAAGTATCAGGGAATGCACATAAGATTGTTGTTGCTGA 463
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 TCATAAAGGGTTGAAGTTTGGGAAAGTATCAGGGAATGCACACAAGATTGTTGTTGCTGA 419
Query 464 AAGAGTTTTGCTCAACTTTATGCAGAGGATGAGTGGAATTGCAACCCTTACCAAGTTAAT 523
||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 420 AAGAGTTGTGCTCAACTTTATGCAGAGGATGAGCGGAATTGCTACCCTTACCAAGTTAAT 479
Query 524 GGCAGATGCTGCATCCCCTGCATGTATACTGGAGACAAGAAAAACTGCTCCTGGTTTGCG 583
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 480 GGCAGATGCTGCATCCCCTGCACGTATACTGGAGACAAGAAAAACTGCTCCTGGTTTGCG 539
Query 584 GTTGGTAGATAAATGGGCGGTACTGATTGGTGGAGGGAGGAATCATAGGATGGGGTTATT 643
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 540 GTTGGTAGACAAATGGGCGGTGCTGATTGGTGGAGGGAGGAATCATAGGATGGGATTATT 599
Query 644 TGATATGGTGATGATAAAAGATAACCATATCTCAGCTGCAGGCGGTATAGTAAACGCCGT 703
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 600 TGATATGGTGATGATCAAAGATAACCATATCTCAGCTGCAGGAGGTATAGTAAATGCCAT 659
Query 704 CAAATCCGTAGACGAATATCTAAAGCAAAAGAATCTCGAAATGGATGTAGAGGTGGAGAC 763
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 660 CAAATCCGTTGACGAATATCTAAAGCAAAAGAATCTCGAAATGGATGTGGAGGTAGAGAC 719
Query 764 GA-GGACGCTTGAGGAAGTGAAGGAAGTGTTAGAGTATGCTAGTGGATCCGAGACTCGGT 822
| | |||||||||||||||||||||||||||||||||| |||||| ||||||| |||||
Sbjct 720 -ACGAACGCTTGAGGAAGTGAAGGAAGTGTTAGAGTATGTTAGTGGCTCCGAGAGTCGGT 778
Query 823 TGACGAGAATAATGCTGGATAATATGGTTGTGCCCTTAGAGAATGGAGATGTCGATGTCA 882
| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 779 TAACGAGAATAATGCTGGATAATATGGTTGTGCCATTAGAGAATGGAGACGTCGATGTCA 838
Query 883 CAATGCTTAAAGATGCGGTAGAGCTAATCAACGGGAGATTCGAGACAGAGGCATCAGGCA 942
|||||||||||||||||||||||||||||||||||| ||||||||||||||| || || |
Sbjct 839 CAATGCTTAAAGATGCGGTAGAGCTAATCAACGGGAAATTCGAGACAGAGGCTTCGGGAA 898
Query 943 ATGTTACACTTGAGACAGTACACAAGATCGGACAGAGTGGAGTTACATTCATTAGCAGTG 1002
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATGTTACCCTTGAGACAGTACACAAGATCGGACAGAGTGGAGTTACATTCATTAGCAGTG 958
Query 1003 GAGCTCTTACGCATTCGGTGAAAGCACTAGACATATCTCTGAAGATCGATACAGAGTTGG 1062
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 959 GAGCTCTTACGCATTCGGTGAAAGCGCTAGACATATCTCTAAAGATCGATACAGAGTTGG 1018
Query 1063 CTCTCGAGGTGGGAAGAAGGACCAAACGAGCATAGAGAACATCGTCTTCCTCGTAT-A-- 1119
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
Sbjct 1019 CTCTCGAGGTGGGAAGAAGGACAAAACGAGCATAGAGAGCATCGTCTTCCTCGTATTAAT 1078
Query 1120 -CTTACTTTCTTT-TTATT--TTCC-GGGAAACATGTAATCAATAAGGTGAGAGGCAAAC 1174
||||||| |||| || || |||| ||||||||| |||||||||||| |||| || ||
Sbjct 1079 TCTTACTTGCTTTCTT-TTAATTCCCGGGAAACATATAATCAATAAGGAGAGA--CAGAC 1135
Query 1175 GAATGAATCTGCCTATAA-AATGACT---GTTTCTTCTACAA-TGTAATAATAGTAAAAC 1229
|||||||||||||||||| ||| ||| ||||||||||||| |||||||||| |
Sbjct 1136 GAATGAATCTGCCTATAATAATAACTAATGTTTCTTCTACAAATGTAATAATA--A---- 1189
Query 1230 TCTTGAGTACAATAGAGTGGAGACATGGATGAATATCTGAATAAGCTTTCTCTCAAACT 1288
| | | |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1190 T----A--A-AATAGAGTGGAGACATGGATGAATAT-TGAATAAGCTTTCTCTCAAACT 1240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48149244171
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5