BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G01350.1 Length=1288 Score E Sequences producing significant alignments: (Bits) Value Ahg484052 jgi|Araly1|484052|fgenesh2_kg.5__44__AT2G01350.1 1818 0.0 > Ahg484052 jgi|Araly1|484052|fgenesh2_kg.5__44__AT2G01350.1 Length=1240 Score = 1818 bits (984), Expect = 0.0 Identities = 1173/1259 (93%), Gaps = 34/1259 (3%) Strand=Plus/Plus Query 45 TCTACAATGATCTCTGTCTCTCGATTCTTGTCGCCTCAATTCTACGCAATTCCAAGGAGC 104 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 TCTACAATGATCTCTGTCTCTCGATTCTTGTCGCCTCAATTCTACGCAATTCAAAGGAGC 60 Query 105 TTCGTAAAAATGTCTGCTTCAGCGACTCAAACGGCCGGAGAAGTTTCAATGGGGATCAAG 164 ||||| |||||||||||||| ||||||||||||||||||||| |||| |||| ||||||| Sbjct 61 TTCGTGAAAATGTCTGCTTCTGCGACTCAAACGGCCGGAGAAATTTCCATGGCGATCAAG 120 Query 165 CCTCCTTCACA-CCCTACTTACGATTTGAAAGCTGTTATCAAACTAGCCCTAGCTGAAGA 223 ||||||||||| ||| ||||||||||||||||| || |||||| |||||||||||||||| Sbjct 121 CCTCCTTCACATCCC-ACTTACGATTTGAAAGCCGTCATCAAATTAGCCCTAGCTGAAGA 179 Query 224 TGCTGGTCATACAGGAGATGTAACGTGTATGGCTACGATACCGTTTGATATGGAAGTGGA 283 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 180 TGCTGGTCATACAGGAGATGTAACGTGTATGGCTACGATACCGTTTGATTTGGAAGTGGA 239 Query 284 AGCTTATTTCTTGGCCAAGGAAGATGGTATTGTTGCTGGAGTTGCTCTTGCTGACATGAT 343 ||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 240 AGCTTATTTCTTGGCTAAGGAAGATGGTATTGTCGCTGGAATTGCTCTTGCTGACATGAT 299 Query 344 TTTTGAACATGTTGATCCCTCCTTGAAGGTTGAATGGATGCGAAAGGATGGAGATTATGT 403 ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 300 TTTTGAACAAGTTGATCCCTCCTTGAAGATTGAATGGATGCGAAAGGATGGAGATTATGT 359 Query 404 TCATAAAGGATTGAAGTTTGGGAAAGTATCAGGGAATGCACATAAGATTGTTGTTGCTGA 463 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 360 TCATAAAGGGTTGAAGTTTGGGAAAGTATCAGGGAATGCACACAAGATTGTTGTTGCTGA 419 Query 464 AAGAGTTTTGCTCAACTTTATGCAGAGGATGAGTGGAATTGCAACCCTTACCAAGTTAAT 523 ||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 420 AAGAGTTGTGCTCAACTTTATGCAGAGGATGAGCGGAATTGCTACCCTTACCAAGTTAAT 479 Query 524 GGCAGATGCTGCATCCCCTGCATGTATACTGGAGACAAGAAAAACTGCTCCTGGTTTGCG 583 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 480 GGCAGATGCTGCATCCCCTGCACGTATACTGGAGACAAGAAAAACTGCTCCTGGTTTGCG 539 Query 584 GTTGGTAGATAAATGGGCGGTACTGATTGGTGGAGGGAGGAATCATAGGATGGGGTTATT 643 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 540 GTTGGTAGACAAATGGGCGGTGCTGATTGGTGGAGGGAGGAATCATAGGATGGGATTATT 599 Query 644 TGATATGGTGATGATAAAAGATAACCATATCTCAGCTGCAGGCGGTATAGTAAACGCCGT 703 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| | Sbjct 600 TGATATGGTGATGATCAAAGATAACCATATCTCAGCTGCAGGAGGTATAGTAAATGCCAT 659 Query 704 CAAATCCGTAGACGAATATCTAAAGCAAAAGAATCTCGAAATGGATGTAGAGGTGGAGAC 763 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 660 CAAATCCGTTGACGAATATCTAAAGCAAAAGAATCTCGAAATGGATGTGGAGGTAGAGAC 719 Query 764 GA-GGACGCTTGAGGAAGTGAAGGAAGTGTTAGAGTATGCTAGTGGATCCGAGACTCGGT 822 | | |||||||||||||||||||||||||||||||||| |||||| ||||||| ||||| Sbjct 720 -ACGAACGCTTGAGGAAGTGAAGGAAGTGTTAGAGTATGTTAGTGGCTCCGAGAGTCGGT 778 Query 823 TGACGAGAATAATGCTGGATAATATGGTTGTGCCCTTAGAGAATGGAGATGTCGATGTCA 882 | |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 779 TAACGAGAATAATGCTGGATAATATGGTTGTGCCATTAGAGAATGGAGACGTCGATGTCA 838 Query 883 CAATGCTTAAAGATGCGGTAGAGCTAATCAACGGGAGATTCGAGACAGAGGCATCAGGCA 942 |||||||||||||||||||||||||||||||||||| ||||||||||||||| || || | Sbjct 839 CAATGCTTAAAGATGCGGTAGAGCTAATCAACGGGAAATTCGAGACAGAGGCTTCGGGAA 898 Query 943 ATGTTACACTTGAGACAGTACACAAGATCGGACAGAGTGGAGTTACATTCATTAGCAGTG 1002 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 ATGTTACCCTTGAGACAGTACACAAGATCGGACAGAGTGGAGTTACATTCATTAGCAGTG 958 Query 1003 GAGCTCTTACGCATTCGGTGAAAGCACTAGACATATCTCTGAAGATCGATACAGAGTTGG 1062 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 959 GAGCTCTTACGCATTCGGTGAAAGCGCTAGACATATCTCTAAAGATCGATACAGAGTTGG 1018 Query 1063 CTCTCGAGGTGGGAAGAAGGACCAAACGAGCATAGAGAACATCGTCTTCCTCGTAT-A-- 1119 |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| | Sbjct 1019 CTCTCGAGGTGGGAAGAAGGACAAAACGAGCATAGAGAGCATCGTCTTCCTCGTATTAAT 1078 Query 1120 -CTTACTTTCTTT-TTATT--TTCC-GGGAAACATGTAATCAATAAGGTGAGAGGCAAAC 1174 ||||||| |||| || || |||| ||||||||| |||||||||||| |||| || || Sbjct 1079 TCTTACTTGCTTTCTT-TTAATTCCCGGGAAACATATAATCAATAAGGAGAGA--CAGAC 1135 Query 1175 GAATGAATCTGCCTATAA-AATGACT---GTTTCTTCTACAA-TGTAATAATAGTAAAAC 1229 |||||||||||||||||| ||| ||| ||||||||||||| |||||||||| | Sbjct 1136 GAATGAATCTGCCTATAATAATAACTAATGTTTCTTCTACAAATGTAATAATA--A---- 1189 Query 1230 TCTTGAGTACAATAGAGTGGAGACATGGATGAATATCTGAATAAGCTTTCTCTCAAACT 1288 | | | |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1190 T----A--A-AATAGAGTGGAGACATGGATGAATAT-TGAATAAGCTTTCTCTCAAACT 1240 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48149244171 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5