BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01370.1
Length=1012
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924131 jgi|Araly1|924131|scaffold_105412.1 490 8e-138
Ahg924156 jgi|Araly1|924156|scaffold_105437.1 468 4e-131
> Ahg924131 jgi|Araly1|924131|scaffold_105412.1
Length=952
Score = 490 bits (265), Expect = 8e-138
Identities = 486/586 (83%), Gaps = 41/586 (7%)
Strand=Plus/Plus
Query 315 TACCAAAAAGAATTATTTTCAAA-GAATATGGAGTGATGATGATGAGATTGTTTTGCTGC 373
||||||||||||||||||||||| ||| |||||||| ||||||||||| || |||||||
Sbjct 374 TACCAAAAAGAATTATTTTCAAAGGAA-GTGGAGTGAAGATGATGAGATCGTCTTGCTGC 432
Query 374 AAGGCATGGTTGATTTTGAGAATGATAAAGGGAAGAGTCCTTATGATGATATGACTGGTT 433
|||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 433 AAGGCATGATCGATTTCAAGAATGATAAAGGGAAGAGTCCTTATGATGATATGACTGCTT 492
Query 434 TTATTGATACGGTGAAGAACTTCATTAGCTTTCAAGCGAATCA-ACATCAATTCACAACC 492
|||||||||||||||||||| |||||||||||||||||||||| | ||||||||| |||
Sbjct 493 TTATTGATACGGTGAAGAACATCATTAGCTTTCAAGCGAATCAGAG-TCAATTCACTACC 551
Query 493 AAAATCCGTCGCTTGAAGGACAAGT-TCCTCAAGAAAT-GGAACAATGGTGTAGATGAGA 550
|| ||||||||||| |||||||||| || || |||| ||||||| |||| ||||||||
Sbjct 552 AAGATCCGTCGCTTAAAGGACAAGTATC-TCC-GAAAGAGGAACAAGGGTGCAGATGAGA 609
Query 551 ACTCTCTTGTAAATGCTCACGACCGGAAATGTTTTCAACTTTCCAAAGTAATTTGGGAAC 610
| ||| ||| ||| |||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 610 AATCTTTTGCAAAGGCTCACGACCTGAAATGTTTTCAACTTTCCAAATTGATTTGGGAAT 669
Query 611 CTAC-AAC-T-AAGGTGGAG-----GA--------G--GTA--GG-A---GATTGGTTTG 646
|||| || | |||| |||| || | | | || | |||||||| |
Sbjct 670 CTACTAAGGTGAAGGAGGAGTCTTTGAAACCCAATGAAGAAAAGGTATTAGATTGGTTCG 729
Query 647 TAAATTCTTATCTTGTAGGATCAATTGCGAGGTTAGGGGTGAG-TGAAGACGTAATGAAA 705
||||||||| ||||||||||||||||||||| || |||||| | |||||| || |||||
Sbjct 730 TAAATTCTTCTCTTGTAGGATCAATTGCGAGCTTTGGGGTG-GCTGAAGATGTCGTGAAA 788
Query 706 CAGAGTTGGAGCATGGT-TCCGATAGA-GACGAAGAAGGAGGTCGAAGAGAAGTTCAAGC 763
||||| ||||||||||| || ||| || || |||||||||| |||||||||||||||||
Sbjct 789 CAGAGATGGAGCATGGTATC-GAT-GAAGATGAAGAAGGAGCTCGAAGAGAAGTTCAAGT 846
Query 764 TGTTGAAAGATGAAGAATCTGAAAACCTACGGCTAAAGACAAGTTTTTTGCAAAAGGTCA 823
|| | ||||| ||||||||||| | | ||||||||||||| ||||| || |||| |
Sbjct 847 TGCTCAAAGAAAAAGAATCTGAATATTTGTGGCTAAAGACAAGGTTTTTCCATGAGGTTA 906
Query 824 ACTCTATGATCATTGAAGCAACAAATTAGACAAGTATCGAATTAGA 869
||||| ||||| ||||| || | ||||||||||||||| |||||
Sbjct 907 ACTCTTTGATCGCTGAAGGAA-A--TTAGACAAGTATCGATTTAGA 949
Score = 76.8 bits (41), Expect = 3e-13
Identities = 45/47 (96%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 186 CAAGCGTCTCAAACCGGAGGAAGATCCATCGATGGTGAAGAGGCGTC 232
|||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 128 CAAGCGTCTCAAACCGGAGGAAGATCCATCGACGGTGAAGAGGTGTC 174
> Ahg924156 jgi|Araly1|924156|scaffold_105437.1
Length=958
Score = 468 bits (253), Expect = 4e-131
Identities = 483/587 (82%), Gaps = 43/587 (7%)
Strand=Plus/Plus
Query 315 TACCAAAAAGAATTATTTTCAAA-GAATATGGAGTGATGATGATGAGATTGTTTTGCTGC 373
||||||||||||||||||||||| ||| |||||||| ||||||||||| || |||||||
Sbjct 380 TACCAAAAAGAATTATTTTCAAAGGAA-GTGGAGTGAAGATGATGAGATCGTCTTGCTGC 438
Query 374 AAGGCATGGTTGATTTTGAGAATGATAAAGGGAAGAGTCCTTATGATGATATGACTGGTT 433
|||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 439 AAGGCATGATCGATTTCAAGAATGATAAAGGGAAGAGTCCTTATGATGATATGACTGCTT 498
Query 434 TTATTGATACGGTGAAGAACTTCATTAGCTTTCAAGCGAATCA-ACATCAATTCACAACC 492
|||||||||||||||||||| |||||||||||||||||||||| | ||||||||| |||
Sbjct 499 TTATTGATACGGTGAAGAACATCATTAGCTTTCAAGCGAATCAGAG-TCAATTCACTACC 557
Query 493 AAAATCCGTCGCTTGAAGGACAAGT-TCCTCAAGAAAT-GGAACAATGGTGTAGATGAGA 550
|| ||||||||||| |||||||||| || || |||| ||||||| |||| ||||||||
Sbjct 558 AAGATCCGTCGCTTAAAGGACAAGTATC-TCC-GAAAGAGGAACAAGGGTGCAGATGAGA 615
Query 551 ACTCTCTTGTAAATGCTCACGACCGGAAATGTTTTCAACTTTCCAAAGTAATTTGGGAAC 610
| ||| ||| ||| |||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 616 AATCTTTTGCAAAGGCTCACGACCTGAAATGTTTTCAACTTTCCAAATTGATTTGGGAAT 675
Query 611 CTAC-AAC-T-AAGGTGGAG-----GA--------G--GTA--GG-A---GATTGGTTTG 646
|||| || | |||| |||| || | | | || | |||||||| |
Sbjct 676 CTACTAAGGTGAAGGAGGAGTCTTTGAAACCCAATGAAGAAAAGGTATTAGATTGGTTCG 735
Query 647 TAAATTCTTATCTTGTAGGATCAATTGCGAGGTTAGGGGTGAG-TGAAGACGTAATGAAA 705
||||||||| ||||||||||||| ||||||| || |||||| | |||| | || |||||
Sbjct 736 TAAATTCTTCTCTTGTAGGATCAGTTGCGAGCTTTGGGGTG-GCTGAACATGTCGTGAAA 794
Query 706 CAGAGTTGGAGCATGGT-TCCGATAGA-GACGAAGAAGGAGGTCGAAGAGAAGTTCAAGC 763
||||| |||||| |||| || ||| || || ||||||| || |||||||||||||||||
Sbjct 795 CAGAGATGGAGCTTGGTATC-GAT-GAAGATGAAGAAGAAGCTCGAAGAGAAGTTCAAGT 852
Query 764 TGTTGAAAGATGAAG-AATCTGAAAACCTACGGCTAAAGACAAGTTTTTTGCAAAAGGTC 822
|| | ||||| ||| |||||||| | || |||||||| |||| ||||| || ||||
Sbjct 853 TGCTCAAAGAA-AAGGAATCTGAATATCTGTGGCTAAAGTCAAGGTTTTTCCATGAGGTT 911
Query 823 AACTCTATGATCATTGAAGCAACAAATTAGACAAGTATCGAATTAGA 869
|||||| ||||| |||||||| | ||||||||||||||| |||||
Sbjct 912 AACTCTTTGATCGCTGAAGCAA-A--TTAGACAAGTATCGATTTAGA 955
Score = 93.5 bits (50), Expect = 3e-18
Identities = 140/178 (79%), Gaps = 28/178 (16%)
Strand=Plus/Plus
Query 76 TTTATCTTG--aaaaaaaaaaTGAAAGGAATAACaaaaaaaCTTTTGGTCTCCCGCTCTC 133
||||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct 1 TTTATCTTGACAAAAAAAAAATGAGAGGAATAAC---AAAACTTTTGGCCTCCCGCTCTC 57
Query 134 TCAAACG-TCTGACGGCC------AAGAA------A-AACCGGAGGAAGATTC-AT-CG- 176
||||| | || || |||| ||||| | ||||||| ||| | | | ||
Sbjct 58 TCAAAAGTTC-GATGGCCAAGAAGAAGAAGCGTTCACAACCGGA-GAACAAGCTTTCCGA 115
Query 177 A--GAGACGAACAAGCGTCTCAAACCGGAGGAAGATCCATCGATGGTGAAGAGGCGTC 232
| | || ||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 116 ACTG-GA-GAACAAGCGTCTCAAACCGGAGGAAGATCCATCGACGGTGAAGAGGTGTC 171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37627319079
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5