BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G01370.1 Length=1012 Score E Sequences producing significant alignments: (Bits) Value Ahg924131 jgi|Araly1|924131|scaffold_105412.1 490 8e-138 Ahg924156 jgi|Araly1|924156|scaffold_105437.1 468 4e-131 > Ahg924131 jgi|Araly1|924131|scaffold_105412.1 Length=952 Score = 490 bits (265), Expect = 8e-138 Identities = 486/586 (83%), Gaps = 41/586 (7%) Strand=Plus/Plus Query 315 TACCAAAAAGAATTATTTTCAAA-GAATATGGAGTGATGATGATGAGATTGTTTTGCTGC 373 ||||||||||||||||||||||| ||| |||||||| ||||||||||| || ||||||| Sbjct 374 TACCAAAAAGAATTATTTTCAAAGGAA-GTGGAGTGAAGATGATGAGATCGTCTTGCTGC 432 Query 374 AAGGCATGGTTGATTTTGAGAATGATAAAGGGAAGAGTCCTTATGATGATATGACTGGTT 433 |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 433 AAGGCATGATCGATTTCAAGAATGATAAAGGGAAGAGTCCTTATGATGATATGACTGCTT 492 Query 434 TTATTGATACGGTGAAGAACTTCATTAGCTTTCAAGCGAATCA-ACATCAATTCACAACC 492 |||||||||||||||||||| |||||||||||||||||||||| | ||||||||| ||| Sbjct 493 TTATTGATACGGTGAAGAACATCATTAGCTTTCAAGCGAATCAGAG-TCAATTCACTACC 551 Query 493 AAAATCCGTCGCTTGAAGGACAAGT-TCCTCAAGAAAT-GGAACAATGGTGTAGATGAGA 550 || ||||||||||| |||||||||| || || |||| ||||||| |||| |||||||| Sbjct 552 AAGATCCGTCGCTTAAAGGACAAGTATC-TCC-GAAAGAGGAACAAGGGTGCAGATGAGA 609 Query 551 ACTCTCTTGTAAATGCTCACGACCGGAAATGTTTTCAACTTTCCAAAGTAATTTGGGAAC 610 | ||| ||| ||| |||||||||| |||||||||||||||||||||| | ||||||||| Sbjct 610 AATCTTTTGCAAAGGCTCACGACCTGAAATGTTTTCAACTTTCCAAATTGATTTGGGAAT 669 Query 611 CTAC-AAC-T-AAGGTGGAG-----GA--------G--GTA--GG-A---GATTGGTTTG 646 |||| || | |||| |||| || | | | || | |||||||| | Sbjct 670 CTACTAAGGTGAAGGAGGAGTCTTTGAAACCCAATGAAGAAAAGGTATTAGATTGGTTCG 729 Query 647 TAAATTCTTATCTTGTAGGATCAATTGCGAGGTTAGGGGTGAG-TGAAGACGTAATGAAA 705 ||||||||| ||||||||||||||||||||| || |||||| | |||||| || ||||| Sbjct 730 TAAATTCTTCTCTTGTAGGATCAATTGCGAGCTTTGGGGTG-GCTGAAGATGTCGTGAAA 788 Query 706 CAGAGTTGGAGCATGGT-TCCGATAGA-GACGAAGAAGGAGGTCGAAGAGAAGTTCAAGC 763 ||||| ||||||||||| || ||| || || |||||||||| ||||||||||||||||| Sbjct 789 CAGAGATGGAGCATGGTATC-GAT-GAAGATGAAGAAGGAGCTCGAAGAGAAGTTCAAGT 846 Query 764 TGTTGAAAGATGAAGAATCTGAAAACCTACGGCTAAAGACAAGTTTTTTGCAAAAGGTCA 823 || | ||||| ||||||||||| | | ||||||||||||| ||||| || |||| | Sbjct 847 TGCTCAAAGAAAAAGAATCTGAATATTTGTGGCTAAAGACAAGGTTTTTCCATGAGGTTA 906 Query 824 ACTCTATGATCATTGAAGCAACAAATTAGACAAGTATCGAATTAGA 869 ||||| ||||| ||||| || | ||||||||||||||| ||||| Sbjct 907 ACTCTTTGATCGCTGAAGGAA-A--TTAGACAAGTATCGATTTAGA 949 Score = 76.8 bits (41), Expect = 3e-13 Identities = 45/47 (96%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 186 CAAGCGTCTCAAACCGGAGGAAGATCCATCGATGGTGAAGAGGCGTC 232 |||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 128 CAAGCGTCTCAAACCGGAGGAAGATCCATCGACGGTGAAGAGGTGTC 174 > Ahg924156 jgi|Araly1|924156|scaffold_105437.1 Length=958 Score = 468 bits (253), Expect = 4e-131 Identities = 483/587 (82%), Gaps = 43/587 (7%) Strand=Plus/Plus Query 315 TACCAAAAAGAATTATTTTCAAA-GAATATGGAGTGATGATGATGAGATTGTTTTGCTGC 373 ||||||||||||||||||||||| ||| |||||||| ||||||||||| || ||||||| Sbjct 380 TACCAAAAAGAATTATTTTCAAAGGAA-GTGGAGTGAAGATGATGAGATCGTCTTGCTGC 438 Query 374 AAGGCATGGTTGATTTTGAGAATGATAAAGGGAAGAGTCCTTATGATGATATGACTGGTT 433 |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 439 AAGGCATGATCGATTTCAAGAATGATAAAGGGAAGAGTCCTTATGATGATATGACTGCTT 498 Query 434 TTATTGATACGGTGAAGAACTTCATTAGCTTTCAAGCGAATCA-ACATCAATTCACAACC 492 |||||||||||||||||||| |||||||||||||||||||||| | ||||||||| ||| Sbjct 499 TTATTGATACGGTGAAGAACATCATTAGCTTTCAAGCGAATCAGAG-TCAATTCACTACC 557 Query 493 AAAATCCGTCGCTTGAAGGACAAGT-TCCTCAAGAAAT-GGAACAATGGTGTAGATGAGA 550 || ||||||||||| |||||||||| || || |||| ||||||| |||| |||||||| Sbjct 558 AAGATCCGTCGCTTAAAGGACAAGTATC-TCC-GAAAGAGGAACAAGGGTGCAGATGAGA 615 Query 551 ACTCTCTTGTAAATGCTCACGACCGGAAATGTTTTCAACTTTCCAAAGTAATTTGGGAAC 610 | ||| ||| ||| |||||||||| |||||||||||||||||||||| | ||||||||| Sbjct 616 AATCTTTTGCAAAGGCTCACGACCTGAAATGTTTTCAACTTTCCAAATTGATTTGGGAAT 675 Query 611 CTAC-AAC-T-AAGGTGGAG-----GA--------G--GTA--GG-A---GATTGGTTTG 646 |||| || | |||| |||| || | | | || | |||||||| | Sbjct 676 CTACTAAGGTGAAGGAGGAGTCTTTGAAACCCAATGAAGAAAAGGTATTAGATTGGTTCG 735 Query 647 TAAATTCTTATCTTGTAGGATCAATTGCGAGGTTAGGGGTGAG-TGAAGACGTAATGAAA 705 ||||||||| ||||||||||||| ||||||| || |||||| | |||| | || ||||| Sbjct 736 TAAATTCTTCTCTTGTAGGATCAGTTGCGAGCTTTGGGGTG-GCTGAACATGTCGTGAAA 794 Query 706 CAGAGTTGGAGCATGGT-TCCGATAGA-GACGAAGAAGGAGGTCGAAGAGAAGTTCAAGC 763 ||||| |||||| |||| || ||| || || ||||||| || ||||||||||||||||| Sbjct 795 CAGAGATGGAGCTTGGTATC-GAT-GAAGATGAAGAAGAAGCTCGAAGAGAAGTTCAAGT 852 Query 764 TGTTGAAAGATGAAG-AATCTGAAAACCTACGGCTAAAGACAAGTTTTTTGCAAAAGGTC 822 || | ||||| ||| |||||||| | || |||||||| |||| ||||| || |||| Sbjct 853 TGCTCAAAGAA-AAGGAATCTGAATATCTGTGGCTAAAGTCAAGGTTTTTCCATGAGGTT 911 Query 823 AACTCTATGATCATTGAAGCAACAAATTAGACAAGTATCGAATTAGA 869 |||||| ||||| |||||||| | ||||||||||||||| ||||| Sbjct 912 AACTCTTTGATCGCTGAAGCAA-A--TTAGACAAGTATCGATTTAGA 955 Score = 93.5 bits (50), Expect = 3e-18 Identities = 140/178 (79%), Gaps = 28/178 (16%) Strand=Plus/Plus Query 76 TTTATCTTG--aaaaaaaaaaTGAAAGGAATAACaaaaaaaCTTTTGGTCTCCCGCTCTC 133 ||||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||| Sbjct 1 TTTATCTTGACAAAAAAAAAATGAGAGGAATAAC---AAAACTTTTGGCCTCCCGCTCTC 57 Query 134 TCAAACG-TCTGACGGCC------AAGAA------A-AACCGGAGGAAGATTC-AT-CG- 176 ||||| | || || |||| ||||| | ||||||| ||| | | | || Sbjct 58 TCAAAAGTTC-GATGGCCAAGAAGAAGAAGCGTTCACAACCGGA-GAACAAGCTTTCCGA 115 Query 177 A--GAGACGAACAAGCGTCTCAAACCGGAGGAAGATCCATCGATGGTGAAGAGGCGTC 232 | | || ||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 116 ACTG-GA-GAACAAGCGTCTCAAACCGGAGGAAGATCCATCGACGGTGAAGAGGTGTC 171 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37627319079 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5