BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01390.1
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322482 jgi|Araly1|322482|fgenesh1_pm.C_scaffold_5000026 2451 0.0
> Ahg322482 jgi|Araly1|322482|fgenesh1_pm.C_scaffold_5000026
Length=1749
Score = 2451 bits (1327), Expect = 0.0
Identities = 1617/1755 (92%), Gaps = 27/1755 (2%)
Strand=Plus/Plus
Query 1 ATGCGCTTCTCTAGCATCTTCCGC-A-AT-ACCCCAATCCAATTCTCCAATCGCCGGAGC 57
||||||||||||| |||||||||| | || ||||||| |||||||||| ||||||||||
Sbjct 1 ATGCGCTTCTCTACCATCTTCCGCAACATCACCCCAACCCAATTCTCCGGTCGCCGGAGC 60
Query 58 TCCGTCAAGCTACTTCACTCTCTTCCTCGT-------CTA-AAA-CCCACCAACTCCAAG 108
|||||||||||||||||| ||||||||||| | | ||| |||||||||||||||
Sbjct 61 TCCGTCAAGCTACTTCACGCTCTTCCTCGTCCAAAACCGAGAAACCCCACCAACTCCAAG 120
Query 109 CGATTCTCCCAAAAACCCAAACTTGTGAAAACACAGA-CCCTACCAGATCCCAGTGTTTA 167
||||||| ||||||||||||||||||||||||||||| ||| |||||||| || |||||
Sbjct 121 CGATTCTTCCAAAAACCCAAACTTGTGAAAACACAGAGCCC-CCCAGATCCAAGGGTTTA 179
Query 168 CACAAGAGACATTGTATCCAACATCTATAACATCCTCAAGTACTCCAATTGGGACTCTGC 227
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 180 CACAAGAGACATTGTATCCAACATCTATAACATCCTCAAGTACTCCACTTGGGAATCTGC 239
Query 228 TCAAGAACAGCTTCCACATCTCGGCGTCAGATGGGATTCTCACATTATCAACCGTGTCTT 287
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCAAGAACAGCTCCCACATCTCGGCGTCAGATGGGATTCTCACATTATCAACCGTGTCTT 299
Query 288 GAAAGCACATCCTCCGATGCAGAAAGCTTGGCTCTTTTTCAACTGGGCTGCTCAAATCAA 347
|||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 300 GAAAGCTCATCCTCCGATGCAGAAAGCTTGGCTCTTTTTCAATTGGGCTTCTCAAATCAA 359
Query 348 GGGTTTCAAACACGACCACTTCACTTATACCACCATGCTCGATATCTTCGGAGAAGCCGG 407
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 360 GGGATTCAAACACGACCACTTCACTTACACCACCATGCTCGATATCTTCGGTGAAGCCGG 419
Query 408 TCGGATTCAATCCATGTACTCTGTTTTTCACCTTATGAAGGAGAAGGGTGTGTTGATCGA 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCGGATTCAATCCATGTACTCTGTTTTTCACCTTATGAAGGAGAAGGGTGTGTTGATCGA 479
Query 468 TACGGTGACTTATACATCGCTGATTCACTGGGTTTCAAGCTCCGGTGATGTGGATGGAGC 527
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 480 TACGGTGACTTATACATCGCTGATTCACTGGGTTTCAAGTTCCGGCGATGTGGATGGAGC 539
Query 528 AATGAGGTTGTGGGAGGAGATGAGAGATAATGGGTGCGAACCTACCGTTGTGTCGTACAC 587
|||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||
Sbjct 540 AATGAGGTTGTGGGAGGAGATGAGAGATGATGGGTGCGAACCCACCGTCGTATCGTACAC 599
Query 588 TGCTTACATGAAGATGCTTTTCGCTGATGGGAGGGTGGAAGAAGCCACGGAGGTGTATAA 647
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 600 TGCTTACATGAAGATACTTTTCGCCGATGGGAGGGTTGAAGAAGCCACGGAGGTGTATAA 659
Query 648 GGAGATGTTACGGTCGCGGGTTTCTCCGAATTGTCACACTTATACTGTATTGATGGAGTA 707
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 GGACATGTTACGGTCGCGAGTTTCTCCGAATTGTCACACTTATACGGTATTGATGGAGTA 719
Query 708 TCTTGTC-GCCACAGGAAAATGTGAGGAAGCCTTGGACATATTCTTTAAAATGCAAGAAA 766
|||||| || ||||||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 720 TCTTGTTAGC-ACAGGAAAATGTGAGGAAGCCTTAGACATTTTCTTTAAGATGCAAGAAA 778
Query 767 TTGGTGTGCAGCCAGATAAAGCAGCTTGCAATATTCTGATAGCGAAAGCCTTG-AAATTT 825
|||| || |||||||||||| ||||||||||||||||||||| |||||| ||| |||||
Sbjct 779 TTGGGGTTCAGCCAGATAAACCAGCTTGCAATATTCTGATAGTGAAAGC-TTGTAAATTC 837
Query 826 GGGGAAACATCTTTCATGACTCGAGTTCTTGTGTACATGAAAGAAAATGGAGTTGTCCTA 885
||||||||||| |||||| ||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 838 GGGGAAACATCATTCATGGCTCGAGTTCTTGTATACATGAAAGAGAATGGTGTTGTCCTT 897
Query 886 CGCTATCCTATCTTTGTTGAAGCTTTAGAGACACTGAAAGCTGCAGGCGAAAGTGATGAT 945
|| || ||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||
Sbjct 898 CGTTACCCTATCTTTCTTGAAGCTTCAGAGACCCTGAAAGCCGCAGGCGAAAGTGATGAT 957
Query 946 CTGTTAAGGGAAGTCAACTCGCATATTTCCGTTGAATC---GTTGTGCTCCAGTGACATT 1002
|||||| || ||||||||||||||||||||| |||||| ||||||||||| |||||
Sbjct 958 CTGTTACGGCAAGTCAACTCGCATATTTCCGCTGAATCTTTGTTGTGCTCCAAAGACATC 1017
Query 1003 GATGAGACTCCAACAGCGGAAGTTAATGACACTAAGAATTCAGATGATAGTAGAGTTATC 1062
||||||||||||||| | |||||| |||||||||| | ||||||||||||||||||||||
Sbjct 1018 GATGAGACTCCAACAACCGAAGTTGATGACACTAACAGTTCAGATGATAGTAGAGTTATC 1077
Query 1063 AGCTCCGTTCTCTTGATGAAGCAGAATCTGGTTGCAGTTGA-CATT-TTACTTAACCAGA 1120
||||||||||||||||||||||||||||||||||||||||| | || || ||||||||||
Sbjct 1078 AGCTCCGTTCTCTTGATGAAGCAGAATCTGGTTGCAGTTGATC-TTATT-CTTAACCAGA 1135
Query 1121 TGAGAGATAGGAACATAAAGCTGGATTCTTTTGTTGTTTCAGCAATCATAGAAACAAACT 1180
||| |||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 1136 TGATAGATAGGAACATAAAGTTGGATTCTTTTGTTGTTTCAACAATCGTAGAAACAAACT 1195
Query 1181 GTGACCGTTGTAGAACAGAGGGGGCTTCGTTGGCTTTTGATTACAGCTTGGAAATGGGAA 1240
|||||||||||||||||||||| |||||||||||| | || || |||| | |||||||||
Sbjct 1196 GTGACCGTTGTAGAACAGAGGGTGCTTCGTTGGCTCTAGAGTATAGCTCGAAAATGGGAA 1255
Query 1241 TTCATCTCAAGAAGTCAGCGTATCTCGCGTTAATTGGTAACTTTCTGAGA-TCAAACGAG 1299
|||||||| |||||||||| |||| |||||||||||| | ||||||||| | |||||||
Sbjct 1256 TTCATCTCGAGAAGTCAGCACATCTTGCGTTAATTGGTCATTTTCTGAGAGT-AAACGAG 1314
Query 1300 CTTCCTAAAGTGATTGAAGTGGTCAAGGAGATGGTGAAAGCCCAACACTCGCTTGGTTGT 1359
|| |||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 1315 CTCCCTAAAGTGATTGAAGTGGTCAAGGAAATGCTAAAAGCCCAACACTCGCTTGGTTGT 1374
Query 1360 TACCAAGGAGCTATGTTGATCCACAGGCTCGGGTTTGGGAGAAGACCTCGTTTAGCCGCA 1419
||||||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||||
Sbjct 1375 TACCAAGGAGCAATGTTGATCCACAGGCTGGGGTTTGGGAAAAGACCTCGCTTAGCCGCA 1434
Query 1420 GACGTTTTCGACTTACTTCCGGATGATCAAAAGGGTGTAGCTGCTTACACTGCGCTGATG 1479
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1435 GAGGTTTTCGACTTACTTCCGGATGATCAAAAGGGTGTAGCTGCTTACACTGCACTGATG 1494
Query 1480 GATGTTTATATCTCAGCAGGGAGTCCAGAGAAAGCAATGAAGATATTACGAGAGATGAGA 1539
||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1495 GATGTCTACATCTCAGCAGGGAGTCCAGAGAAAGCAATGAAGATATTAGGAGAGATGAGA 1554
Query 1540 GAGCGAGAGATAATGCCTTCTTTGGGGACATACGATGTTCTATTGTCTGGCCTTGAGAAA 1599
|||||||||||||||||||| |||| |||||| ||||| | |||||||| |||||||||
Sbjct 1555 GAGCGAGAGATAATGCCTTCGCTGGGAACATACAATGTTTTGTTGTCTGGTCTTGAGAAA 1614
Query 1600 ACTAGTGATTTCCAGAAGGAAGTGGCGTTGTTGAGGAAGGAGAAGAAGAGTCTTGTTGCT 1659
|| ||||| |||||||| |||| |||||||||||||||||||||||||| |||||| |||
Sbjct 1615 ACCAGTGAGTTCCAGAAAGAAGCGGCGTTGTTGAGGAAGGAGAAGAAGATTCTTGTAGCT 1674
Query 1660 TCTGCACGTTTCCGAGAAAATGTTCATGTTGAAGACAAAATATGTGATCTTCTCTTTGCT 1719
|||| |||||||| ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1675 ACTGCCCGTTTCCGGGAAAATGTTGATGTTGAAGACAAAATATGTGATCTTCTGTTTGCT 1734
Query 1720 ACAAATCTGTTGTAA 1734
|||||||||||||||
Sbjct 1735 ACAAATCTGTTGTAA 1749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65058138460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5