BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01400.1
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484055 jgi|Araly1|484055|fgenesh2_kg.5__47__AT2G01410.1 721 0.0
Ahg322483 jgi|Araly1|322483|fgenesh1_pm.C_scaffold_5000027 582 1e-165
> Ahg484055 jgi|Araly1|484055|fgenesh2_kg.5__47__AT2G01410.1
Length=1335
Score = 721 bits (390), Expect = 0.0
Identities = 523/582 (90%), Gaps = 29/582 (5%)
Strand=Plus/Minus
Query 447 CCTCCACCTCTTGTCGTTGAAGCAAACTTGCTACAATAAGctctctctctctTTTAGCTA 506
||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||
Sbjct 1335 CCTCCACCTCTTGTCGTGGAAGCTAACTTGCTGCAATAAGCTCTCTCTCTCTCTTAGCTA 1276
Query 507 CACAAATGTCAG----AATCAATACCTTTGATTTCAACACTACA---TGCTGTTCTGTGC 559
||||||||| || |||||||| |||| |||||||||||||| |||||||||||||
Sbjct 1275 CACAAATGTGAGAATCAATCAATAGCTTTCATTTCAACACTACATGCTGCTGTTCTGTGC 1216
Query 560 TAGGTTTCCTACTACAAAACGTGTAAGATGATGAAATACACAAGTAGAGAAGAGCTAAGT 619
||||||||||| |||||||||||| | | |||| | | | | | ||||||
Sbjct 1215 TAGGTTTCCTATTACAAAACGTGT-A-A-GATG---------A-T---G-A-A-CTAAGT 1175
Query 620 GATCTTCTTGTCCATGTTTGTGATGAGCTTCTTCATCTGAAATCTCCAGAAACAGAAGTA 679
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1174 GATCTTTTTGTCCATGTTTGTGATGAGCTTCTTCATCTGAAACCTCCAGAAACAGAAGTA 1115
Query 680 AGCGAAGCCAAATCCAATCAACACATACAACCAAATCTTATCTTCACCACCTTCCTTCTC 739
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 AGCGAAACCAAATCCGATCAACACATACAACCAAATCTTATCTTCACCACCTTCCTTCTC 1055
Query 740 CGACCAAACCTCTTCTATACCAAACCATTCCCTCGCTCCTTCTTCTTTGTAACTACTTCC 799
||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||
Sbjct 1054 CGACCAAACCTCTTCTATACCAAACCATTCCCTCGGTCCTTCTTCTTTGTAACT--T-CC 998
Query 800 CATTATCCCCTCCATCACTCTCCCATACAACACATATATCCTATCCCGTCCCGCAACCGT 859
|||||||||||||||||||||||| || ||||| ||||||||||||||| |||| |||||
Sbjct 997 CATTATCCCCTCCATCACTCTCCCGTATAACACGTATATCCTATCCCGTTCCGCCACCGT 938
Query 860 CACCGCGGTCGGAAAGCCCTCGATGTCGAGGTCAATTTCGTCGTAAACAACTCCTTCGCT 919
|||||| |||||||||||||||| |||||||||||||||||| || || |||||||| ||
Sbjct 937 CACCGCCGTCGGAAAGCCCTCGAGGTCGAGGTCAATTTCGTCATATACCACTCCTTCACT 878
Query 920 CCAGCTATCTTGGCTTTTGAGTAACCAAAGCTTCTTCTGTGACACCACCATGACTGTGCC 979
||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 877 CCAACTGTCTTGGCTCTTGAGTAACCAAAGCTTCTTCTGCGACACCACCATGACTGTGCT 818
Query 980 GTCTCTCCGTCTCCTCGTCATCCCGTCCGCCGCAATCAGATC 1021
||| ||||||||||||||||||||||||||||||||||||||
Sbjct 817 GTCCCTCCGTCTCCTCGTCATCCCGTCCGCCGCAATCAGATC 776
> Ahg322483 jgi|Araly1|322483|fgenesh1_pm.C_scaffold_5000027
Length=429
Score = 582 bits (315), Expect = 1e-165
Identities = 403/443 (91%), Gaps = 16/443 (4%)
Strand=Plus/Plus
Query 45 ATGGCGAGATCGTGCTCTATCTGGACACCTGTTTTGATCTCACTTTCACCAG-TGACCGG 103
||||||||||||||||| |||||||| |||||||||||||||||||| || | | |||||
Sbjct 1 ATGGCGAGATCGTGCTCAATCTGGACGCCTGTTTTGATCTCACTTTCTCC-GATAACCGG 59
Query 104 AGAATCACCTAAA-ATTTCACGGCGCCGGGTGATTTTAGCCACAAGTATAGGATCTCCTC 162
||||||||||||| |||| ||||||||||||||||||||||||||| |||| |||||||
Sbjct 60 AGAATCACCTAAATTTTTC-CGGCGCCGGGTGATTTTAGCCACAAGTGTAGGTTCTCCTC 118
Query 163 AGCCTTTACTTGAAGCAAAGATCAAGGAACCTCAGAAGCTTCAAGTCCTTGATTCCAAAG 222
||||||||||||||||||| || |||||||| |||||||| |||||||||||||||||||
Sbjct 119 AGCCTTTACTTGAAGCAAACATTAAGGAACCCCAGAAGCTCCAAGTCCTTGATTCCAAAG 178
Query 223 ATGTTTCCAGAAGAAACACTATGCTGTATCTAGCTGCTGGATTTCTTGGAGGGATCAACT 282
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 179 ATGTTTCCAGAAGAAACACTATGCTGTATCTAGCCGCTGGATTACTTGGAGGGATCAACA 238
Query 283 TTCTCAATGGTGAAGCCGCAGAAGCTCGAGTAGGGAGAAAGGAGAACAGAAAGAAAGCAT 342
||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 239 TTCTCCATGGTGAATCCGCAGAAGCTCGAGTAGGGAGAAAGGAGAACAGAAAAAAAGCAC 298
Query 343 TGGAGAAGCTGAGGGCCAAAGCTAAAGAGTCAGAGCCCAACAACAAGTCAGGTAACCAAA 402
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 299 TGGAGAAGCTGAGGGCGAAAGCTAAAGAGTCAGAGCCCAACAACAAGTCAGGAAACCAAA 358
Query 403 AGATAGAGAAAGAGTTAGAGAAAGAAGAAGTGTTTCCTCTACTTCCTCCACCTCTTGTCG 462
||||||||| ||| | |||| | | | || |||||||||||||||||||||||||
Sbjct 359 AGATAGAGA--GAG--A-AGAA-GTA----T-TT-CCTCTACTTCCTCCACCTCTTGTCG 406
Query 463 TTGAAGCAAACTTGCTACAATAA 485
| ||||| |||||||| ||||||
Sbjct 407 TGGAAGCTAACTTGCTGCAATAA 429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38008548249
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5