BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01410.1
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484055 jgi|Araly1|484055|fgenesh2_kg.5__47__AT2G01410.1 1934 0.0
> Ahg484055 jgi|Araly1|484055|fgenesh2_kg.5__47__AT2G01410.1
Length=1335
Score = 1934 bits (1047), Expect = 0.0
Identities = 1261/1360 (93%), Gaps = 32/1360 (2%)
Strand=Plus/Plus
Query 14 TTTTCCTAAATCGAAATCACAGATGAAAGCGAACATGTCGTCGTCGTCTTCCACTCGATA 73
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1 TTTTCCTAAATCGAAATCACAGATGAAAGCGAACATGTCGTC-T--TCTTCCACTCGATG 57
Query 74 CAGATCCTTCTTCGTCTTCCCAATTCTCTTCGCCGTCTTGTTCCTGGGACTTCTGATTCC 133
||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| ||
Sbjct 58 CAGATCCTTCTTCGTCTTCCCAATTCTCTTCGCCGTCGTGTTGTTTGGACTTCTGATCCC 117
Query 134 CTCCTCCGCCGATAACCGCCACGTTATCAACTTCCGATCGCCGGGACTCTACCCGGAGGG 193
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CTCCTCCGCCGATAAGCGCCACGTTATCAACTTCCGATCGCCGGGACTCTACCCGGAGGG 177
Query 194 ACTAACCTGGGATCCAAGGGACCAGCATTTTCTAGTCGGTTCTCTCCACAGCCGCACAAT 253
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 178 ACTAACCTGGGATCCAAGGGACCAACATTTTCTAGTCGGTTCCCTCCACAGCCGCACAAT 237
Query 254 TCATTCCGTCTCCGACGCTGGAGTCATCGAAACCCTAATCTCCGATCTCGATCTACCGGA 313
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 238 TCATTCCGTCTCCGACGCTGGAGTTATCGAAACCCTAATTTCCGATCTCGATCTACCGGA 297
Query 314 GAACTCCACTATCCTCGGTCTCGCCGTTGACTCTACTAATCGCCGTCTCCTTGCCTGTAT 373
|||| ||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||
Sbjct 298 GAACGCCACTATCCTCGGCCTCGCCGTTGACTCCACTAATCGCCGTCTGCTTGCCTGCAT 357
Query 374 CCAGAGTTTGCCGCCTCTCCCTCCCTTCAGTGCCCTAGCCTCCTACGATCTCCGCAGCGG 433
||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 358 CCACAGTTCGCCGCCTCTCCCTCCCTTCAGTGCCCTAGCCGCCTACGATCTCCGCAGCGG 417
Query 434 AGGCCGTCGTGTATTCCTCTCTCCTCTCCCGTCTCTTCCCGGAGACGACGAAGACATCGC 493
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 418 CGGCCGTCGTGTATTCCTCTCTCCTCTCCCGTCGCTTCCCGGGGACGACGAAGACATCGC 477
Query 494 TCGTGATGTCGCCAATGACGTGGCGGTTGATTTCAAAGGCAACGCTTACGTCACCAACTC 553
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TCGTGATATCGCCAATGACGTGGCGGTTGATTTCAAAGGCAACGCTTACGTCACCAACTC 537
Query 554 AGCCAAAAACTTCATCTGGAAAGTCGATCGCGACGGCGCAGCTTCGATCTTCTCCAAATC 613
||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| |||
Sbjct 538 AGCGAAAAACTTCATCTGGAAAGTCGATCGCGACGGCGCTGCCTCGATCTTCTCCAGATC 597
Query 614 GCCGTTGTTCAATTCGCAGCCTGTGGCGGCAGACGCGGACGCAAGTTTCCGCGATTGCGG 673
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 598 GCCGTTGTTCAATTCGCAGCCTGTGGCAGCAGACGCGGACGCAAGTTTCCGCGATTGCGG 657
Query 674 CTTGAACGGGATCGTGTACATCAGCAAAGGCTATCTCCTGGTGGTGCAGAGCAACACAGG 733
| ||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 658 CCTGAACGGGATCGTTTACATCAGCAAAGGATACCTCCTGGTGGTGCAGAGCAACACAGG 717
Query 734 GAAGGTATTCAAAGTTGACGAAGATAGCGGGAATGCGAGGCTGGTGTTGTTAAACGGTGA 793
||||||||||||||| |||||||| |||||||||||||||||||||||| | ||||| ||
Sbjct 718 GAAGGTATTCAAAGTAGACGAAGAGAGCGGGAATGCGAGGCTGGTGTTGCTGAACGGAGA 777
Query 794 TCTGATTGCGGCGGACGGGATGACGAGGAGACGGAGAGACGGCACAGTCATGGTGGTGTC 853
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 778 TCTGATTGCGGCGGACGGGATGACGAGGAGACGGAGGGACAGCACAGTCATGGTGGTGTC 837
Query 854 ACAGAAGAAGCTTTGGTTACTCAAAAGCCAAGATAGCTGGAGCGAAGGAGTTGTTTACGA 913
||||||||||||||||||||||| |||||||| || ||||| |||||||| || || ||
Sbjct 838 GCAGAAGAAGCTTTGGTTACTCAAGAGCCAAGACAGTTGGAGTGAAGGAGTGGTATATGA 897
Query 914 CGAAATTGACCTCGACATCGAGGGCTTTCCGACCGCGGTGACGGTTGCGGGACGGGATAG 973
|||||||||||||||| |||||||||||||||| ||||||||||| |||| |||||||||
Sbjct 898 CGAAATTGACCTCGACCTCGAGGGCTTTCCGACGGCGGTGACGGTGGCGGAACGGGATAG 957
Query 974 GATATATGTGTTGTATGGGAGAGTGATGGAGGGGATAATGGGAAGTAGTTACAAAGAAGA 1033
|||||| ||||| || |||||||||||||||||||||||||| | ||||||||||||||
Sbjct 958 GATATACGTGTTATACGGGAGAGTGATGGAGGGGATAATGGG-A--AGTTACAAAGAAGA 1014
Query 1034 AGGAGCGAGGGAATGGTTTGGTATAGAAGAGGTTTGGTCGGAGAAGGAAGGTGGTGAAGA 1093
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AGGACCGAGGGAATGGTTTGGTATAGAAGAGGTTTGGTCGGAGAAGGAAGGTGGTGAAGA 1074
Query 1094 TAAGATTTGGTTGTATGTGTTGATTGGATTTGGCTTCGCTTACTTCTGTTTCTGGAGATT 1153
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 1075 TAAGATTTGGTTGTATGTGTTGATCGGATTTGGTTTCGCTTACTTCTGTTTCTGGAGGTT 1134
Query 1154 TCAGATGAAGAAGCTCATCACAAACATGGACAAGAAGATCACTTAGCTCTTCTCTACTTG 1213
||||||||||||||||||||||||||||||||| |||||||||||| | | | | |
Sbjct 1135 TCAGATGAAGAAGCTCATCACAAACATGGACAAAAAGATCACTTAG-T-T-C---A-T-- 1185
Query 1214 TGTATTTCATCATCTTACACGTTTTGTAGTAGGAAACCTAGCACAGAACAGCA---TGTA 1270
|||| | | |||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1186 -------CATC-T-T-ACACGTTTTGTAATAGGAAACCTAGCACAGAACAGCAGCATGTA 1235
Query 1271 GTGTTGAAATCAAAGGTATTGATT----CTGACATTTGTGTAGCTAAAagagagagagag 1326
|||||||||| |||| |||||||| || |||||||||||||||| ||||||||||||
Sbjct 1236 GTGTTGAAATGAAAGCTATTGATTGATTCTCACATTTGTGTAGCTAAGAGAGAGAGAGAG 1295
Query 1327 CTTATTGTAGCAAGTTTGCTTCAACGACAAGAGGTGGAGG 1366
||||||| |||||||| ||||| |||||||||||||||||
Sbjct 1296 CTTATTGCAGCAAGTTAGCTTCCACGACAAGAGGTGGAGG 1335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51199077531
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5