BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01420.2
Length=2353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484057 jgi|Araly1|484057|fgenesh2_kg.5__49__AT2G01420.1 3210 0.0
> Ahg484057 jgi|Araly1|484057|fgenesh2_kg.5__49__AT2G01420.1
Length=2208
Score = 3210 bits (1738), Expect = 0.0
Identities = 2038/2179 (94%), Gaps = 36/2179 (2%)
Strand=Plus/Plus
Query 125 AAAAAATGATTACGTGGCACGACTTGTACACCGTCCTCACCGCCGTGGTACCACTTTACG 184
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 56 AAAAAATGATTACGTGGCACGACTTGTACACCGTCCTCACCGCCGTGGTGCCACTTTACG 115
Query 185 TAGCTATGATTCTCGCCTACGGATCCGTACAGTGGTGGAAGATATTCTCACCAGACCAGT 244
| || |||||||| |||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 116 TCGCCATGATTCTTGCCTACGGATCCGTGCAGTGGTGGAAGATATTCTCCCCTGACCAGT 175
Query 245 GCTCCGGCATCAACCGCTTCGTCGCTATCTTCGCCGTCCCTCTCCTCTCCTTCCACTTCA 304
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 176 GCTCCGGCATCAATCGCTTCGTCGCCATTTTCGCCGTCCCTCTCCTCTCCTTCCACTTCA 235
Query 305 TCTCCACCAACGATCCTTACGCCATGAATTTCCGCTTCGTCGCCGCCGACACGCTTCAAA 364
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 236 TCTCCACCAACGATCCTTACGCCATGAACTTCCGCTTCGTCGCCGCCGACACGCTTCAAA 295
Query 365 AAATCATCATGCTCGTCTTACTTGCTCTATGGGCTAACCTAACCAAGAACGGTAGCTTGG 424
| ||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct 296 AGATCATCATGCTCGTCTTGCTTGGTCTATGGGCTAATCTAACCAAGAACGGTAGCTTGG 355
Query 425 AGTGGATGATCACAATCTTCTCTCTCAGCACTCTCCCAAACACTCTTGTCATGGGGATCC 484
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 356 AGTGGATGATCACCATCTTCTCTCTCAGCACTCTCCCAAACACTCTTGTCATGGGAATCC 415
Query 485 CTCTGTTGATCGCCATGTACGGAACCTACGCAGGTTCTCTAATGGTCCAAGTCGTTGTTC 544
|| ||||||||||||||||||| || ||||| || ||||| ||||| |||||||||||||
Sbjct 416 CTTTGTTGATCGCCATGTACGGGACTTACGCTGGCTCTCTCATGGTTCAAGTCGTTGTTC 475
Query 545 TTCAGTGTATCATTTGGTACACTCTCCTTCTCTTCCTCTTCGAGTACCGTGGCGCTAAGC 604
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 476 TTCAGTGTATCATTTGGTACACTCTCCTTCTCTTTCTCTTCGAGTACCGTGGCGCTAAGC 535
Query 605 TTCTT-ATTATGGAGCAGTTCCCGGAGACTGGTGCGTCTATTGTTTCGTTTAAAGTTGAA 663
|| || |||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 536 TT-TTGATTATGGAGCAGTTCCCGGAGACTGGTGCGTCCATTGTCTCCTTTAAAGTTGAA 594
Query 664 TCCGACGTCGTTTCTCTCGACGGTCATGATTTTCTTGAGACGGATGCTGAGATAGGAAAC 723
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 595 TCCGACGTCGTTTCTCTCGACGGTCATGATTTTCTTGAGACGGATGCTGAGATCGGAAAC 654
Query 724 GACGGGAAGCTTCATGTTACCGTGAGGAAATCAAACGCATCGAGACGGTCACTGATGATG 783
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 655 GACGGGAAGCTTCATGTTACGGTGAGGAAATCAAACGCTTCGAGACGGTCACTGATGATG 714
Query 784 ACTCCACGGCCTTCGAATCTTACCGGAGCTGAGATCTATAGTCTTAGTTCGACTCCGAGA 843
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 715 ACTCCTCGGCCTTCCAATCTCACCGGAGCTGAGATCTATAGTCTTAGTTCGACTCCGAGA 774
Query 844 GGTTCTAACTTTAACCATTCTGATTTTTACTCTGTTATGGGGTTTCCCGGCGGGAGGCTT 903
|||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 775 GGTTCTAATTTTAACCATTCTGATTTTTACTCGGTGATGGGATTTCCCGGCGGGAGGCTC 834
Query 904 TCGAATTTTGGTCCGGCGGATTTGTACTCCGTTCAATCTTCTCGTGGTCCGACTCCACGG 963
|| || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 835 TCTAACTTTGGTCCGGCGGATCTATACTCCGTTCAATCTTCTCGTGGTCCGACTCCACGG 894
Query 964 CCTTCGAACTTCGAAGAGAACAACGCCGTTAAATATGGATTTTACAATAACACTAACAGT 1023
||||| || |||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 895 CCTTCTAATTTCGAAGAGAACAACGCCGTGAAATATGGATTTTACCCTAACACTAACA-- 952
Query 1024 TC-TGTTCCGGCGGCCGGTTCGTACCCGGCTCCGAACCCGGAGTTTTCAACCGGTACGGG 1082
| ||| | || |||| ||||||||||||||||||||||||| || |||||||||
Sbjct 953 -CGAGTT-CTGC-TCCGG--CGTACCCGGCTCCGAACCCGGAGTTCTCCTCCGGTACGGC 1007
Query 1083 TGTTTCAACTAAACCGAATAAAATTCCTAAAGAAAACCAACAGCAACTGCAAGAGAAAGA 1142
|||| ||||||||||||||||||| || |||||||||| | | |||| || || || ||
Sbjct 1008 TGTTACAACTAAACCGAATAAAATCCCAAAAGAAAACC-A-A-CAACAGCTTGATAAGGA 1064
Query 1143 TAGCAAAGCGAGCCATGACGCTAAGGAGCTTCACATGTTTGTTTGGAGCTCAAGCGCTTC 1202
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 TAACAAAGCGAGCCACGACGCTAAGGAGCTTCACATGTTTGTTTGGAGCTCAAGCGCTTC 1124
Query 1203 TCCGGTCTCCGACGTGTTTGGCGGAGGTGCAGGCG-ACAACGTGGCAACGGAACAATCTG 1261
|||||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 1125 GCCGGTCTCCGACGTGTTTGGCGGAGGTGCAGGTGAAC-ACGTGGCAACGGAACAATCTG 1183
Query 1262 AACAAGGTGCTAAGGAGATTCGGATGGTTGTCTCTGATCAACCTCGAAAGAGTAATGCTA 1321
||||||||||||||||||| ||||||||||| ||||||||||||| | || |
Sbjct 1184 AACAAGGTGCTAAGGAGATCCGGATGGTTGTTTCTGATCAACCTC------G-AA----A 1232
Query 1322 GAGGTGGTGGTGATGATATCGGCGGTCTTGATAGTGGAGAGGGAGAAAGAGAGATAGAGA 1381
|| ||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||
Sbjct 1233 GA-GTGGTGGTGATGATATCGGCGGTGGTGATATTGGGGAGGGAGAAAGAGAGATAGAGA 1291
Query 1382 AAGCTACAGCAGGGCTGAATAAAATGGGGTCTAATTCCACGGCGGAGCTAGAGGCGGCTG 1441
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1292 AAGCTACAGCAGGGCTGAATAAAGTGGGGTCTAATTCCACGGCAGAGCTAGAGGCGGCTG 1351
Query 1442 GTGGAGATGGCGGC---GGCAACAACGGAACACATATGCCGCCGACAAGTGTGATGAC-A 1497
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1352 GTGGAGATGGCGGCGGAGGCGGCAACGGAACACATATGCCGCCGACAAGTGTGATGACGA 1411
Query 1498 CGACTGATATTGATAATGGTGTGGAGAAAGCTGATCAGAAACCCAAACACGTACTCCAGT 1557
|||||||| |||||||||||||| |||| || ||||||||||||||||| |||||||||
Sbjct 1412 -GACTGATACTGATAATGGTGTGGCGAAAACTCATCAGAAACCCAAACACATACTCCAGT 1470
Query 1558 CTAATCGGTCTCATATGGGCTCTTGTTGCTTACCGGTGGCATGTGGCTATGCCCAAAATA 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1471 CTAATCGGTCTCATATGGGCTCTTGTTGCTTACCGGTGGCATGTGGCTATGCCAAAAATA 1530
Query 1618 TTACAACAATCCATCTCCATACTCTCAGATGCTGGTCTTGGAATGGCTATGTTCAGCTTA 1677
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 CTACAACAATCCATCTCCATACTCTCAGATGCTGGTCTTGGAATGGCTATGTTCAGCTTA 1590
Query 1678 GGTTTATTCATGGCACTTCAACCCAAAATCATTGCTTGTGGGAACTCTGTCGCCACGTTT 1737
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 GGTCTATTCATGGCACTTCAACCCAAAATCATTGCTTGTGGGAACTCTGTCGCCACGTTT 1650
Query 1738 GCCATGGCGGTCAGATTTATAACCGGTCCGGCCATCATGGCTGTTGCTGGGATTGCCATT 1797
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1651 GCCATGGCCGTCAGATTTATAACCGGTCCGGCCATCATGGCTGTTGCTGGGATTGCCATT 1710
Query 1798 GGCTTACACGGCGACCTTCTCCGTATAGCCATCGTTCAGGCTGCGTTGCCTCAAGGAATA 1857
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1711 GGGTTACACGGGGACCTTCTCCGTATAGCCATCGTCCAGGCTGCGTTGCCTCAAGGAATA 1770
Query 1858 GTTCCGTTTGTGTTTGCAAAAGAGTACAATGTGCATCCCACGATTCTAAGCACTGGGGTC 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 GTTCCGTTTGTGTTTGCAAAAGAGTACAATGTGCATCCCACGATTCTAAGCACTGGGGTC 1830
Query 1918 ATATTTGGAATGTTAATAGCCTTACCTATAACTCTGGTCTACTATATTCTTCTTGGCCTT 1977
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1831 ATATTTGGAATGTTAATAGCTTTACCCATAACTCTGGTCTACTATATTCTTCTTGGCCTC 1890
Query 1978 TGAATTGGTCCCTTCAGTATCAACTGGCTTTTGAGAGAGCCTCGGAGATTGGGCTATTTA 2037
|||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1891 TGAATTGGTCCCTTCAGTTTCAACTGGCTTTTGAGAGCGCCTCGGAGATTGGGTTATTTA 1950
Query 2038 TTTCTCGGTAACGAGGAAATAAGCAAAGCCTTT-ATTTTTCGTGGGAAAGAGTGGAAGGT 2096
|||||||||||| ||||||||| |||||| ||| ||||| ||||||||||||||| ||||
Sbjct 1951 TTTCTCGGTAACCAGGAAATAAACAAAGCTTTTTATTTT-CGTGGGAAAGAGTGGTAGGT 2009
Query 2097 GAAGAAGAAGATATGCCTTTGGTTTTTGGTTCCAATATTTGTGGAACACAACAAAAGTAC 2156
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2010 GAAGAAGAAGATATGCCTTTGGTTTTTGCTTCCAATATTTGTGGAACACAACAAAAGTAC 2069
Query 2157 TTAGGATTTAGTGAACAAGACTTGAATGGATTAAGGATCTTGTCTTCATTAGACGCCAAG 2216
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2070 TTAGGATTTAGTGAACAAGATTTGAATGGATTAAGGATCTTGTCTTCATTAGACGCCAAG 2129
Query 2217 AAGAAAAAATCTCTCTTCC-T-TACCtttattttttcattttctgtttttgttaatttat 2274
|||| |||| | ||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 2130 AAGATAAAAGCACTCTTCCATCTATCTTTATTTTTTCATTTTCTGTTTTTGTTAATTTAT 2189
Query 2275 gtgtagattttGGCTAAGC 2293
|||||||||||||||||||
Sbjct 2190 GTGTAGATTTTGGCTAAGC 2208
Score = 86.1 bits (46), Expect = 1e-15
Identities = 46/46 (100%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 6 ATTACTGTACTTTTCTCTCTTAACGGTTTCTTTATTATTCTTCCCA 51
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTACTGTACTTTTCTCTCTTAACGGTTTCTTTATTATTCTTCCCA 46
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88636000115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5