BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01430.1
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346639 jgi|Araly1|346639|fgenesh1_pg.C_scaffold_5000031 989 0.0
> Ahg346639 jgi|Araly1|346639|fgenesh1_pg.C_scaffold_5000031
Length=606
Score = 989 bits (535), Expect = 0.0
Identities = 586/610 (96%), Gaps = 5/610 (1%)
Strand=Plus/Plus
Query 220 ATGGCGATTTTGCCGGAAAACTCTTCAAACTTGGATCTTACTATCTCCGTTCCAGGCTTC 279
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGATTTTACCCGAAAACTCTTCAAACTTGGATCTTACTATCTCCGTTCCAGGCTTC 60
Query 280 TCTTCATCCCCTCTCTCCGATGAAGGAAGTGGCGGAGGAAGAGACCAGCTAAGGCTAGAC 339
||||| ||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 61 TCTTCCTCCCCTCCCTCCGATGAAGGAAGTGGCGGAGGAAAAGACCAGCTAAAGCTAGAC 120
Query 340 ATGAATCGGTTACCGTCGTCTGAAGACGGAGACGATGAAGAATTCAGTCACGATGATGGC 399
|||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 ATGAATCGATTGCCGTCGTCTGAAGACGGAGACGATGAAGAATTCAGTCAC---GATGGC 177
Query 400 TCTGCTCCTCCGCGAAAGAAACTCCGTCTAACCAGAGAACAGTCACGTCTTCTTGAAGAT 459
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 178 TCTGCTCCTCCGCGAAAGAAACTTCGTCTAACCAGAGAACAGTCACGTCTTCTCGAAGAT 237
Query 460 AGTTTCAGACAGAATCATACCCTTAATCCCAAACAAAAGGAAGTACTTGCCAAGCATTTG 519
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 238 AGTTTCAGACAGAATCATACCCTTAATCCCAAACAAAAGGAAGCACTTGCCAAGCATTTG 297
Query 520 ATGCTACGGCCAAGACAAATTGAAGTTTGGTTTCAAAACCGTAGAGCAAGGAGCAAATTG 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATGCTACGGCCAAGACAAATTGAAGTTTGGTTTCAAAACCGTAGAGCAAGGAGCAAATTG 357
Query 580 AAGCAAACCGAGATGGAATGCGAGTATCTCAAAAGGTGGTTTGGTTCATTAACGGAAG-A 638
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 358 AAGCAAACCGAGATGGAATGCGAGTACCTCAAAAGGTGGTTTGGTTCATTAACGGA-GCA 416
Query 639 AAACCACAGGCTCCATAGAGAAGTAGAAGAGCTTAGAGCCATGAAGGTTGGCCCAACAAC 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AAACCACAGGCTCCATAGAGAAGTAGAAGAGCTTAGAGCCATGAAGGTTGGCCCAACAAC 476
Query 699 GGTGAACTCTGCCTCGAGCCTTACTATGTGTCCTCGCTGCGAGCGAGTTACCCCTGCCGC 758
|||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||
Sbjct 477 AGTGAACTCTGCCTCGAGCCTCACTATGTGTCCCCGCTGCGAGCGAGTTACCACTGCAGC 536
Query 759 GAGCCCTTCGAGGGCGGTGGTGCCGGTTCCGGCTAAGAAAACGTTTCCGCCGCAAGAGCG 818
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 537 GAGCCCTTCGAGGGCGGTGGTGCCGGTTCCGGCCAAGAAAACGTTTCCGCCGCAAGAGCG 596
Query 819 TGATCGTTGA 828
||||| ||||
Sbjct 597 TGATCATTGA 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30612702351
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5