BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G01430.1 Length=828 Score E Sequences producing significant alignments: (Bits) Value Ahg346639 jgi|Araly1|346639|fgenesh1_pg.C_scaffold_5000031 989 0.0 > Ahg346639 jgi|Araly1|346639|fgenesh1_pg.C_scaffold_5000031 Length=606 Score = 989 bits (535), Expect = 0.0 Identities = 586/610 (96%), Gaps = 5/610 (1%) Strand=Plus/Plus Query 220 ATGGCGATTTTGCCGGAAAACTCTTCAAACTTGGATCTTACTATCTCCGTTCCAGGCTTC 279 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGATTTTACCCGAAAACTCTTCAAACTTGGATCTTACTATCTCCGTTCCAGGCTTC 60 Query 280 TCTTCATCCCCTCTCTCCGATGAAGGAAGTGGCGGAGGAAGAGACCAGCTAAGGCTAGAC 339 ||||| ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 61 TCTTCCTCCCCTCCCTCCGATGAAGGAAGTGGCGGAGGAAAAGACCAGCTAAAGCTAGAC 120 Query 340 ATGAATCGGTTACCGTCGTCTGAAGACGGAGACGATGAAGAATTCAGTCACGATGATGGC 399 |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 ATGAATCGATTGCCGTCGTCTGAAGACGGAGACGATGAAGAATTCAGTCAC---GATGGC 177 Query 400 TCTGCTCCTCCGCGAAAGAAACTCCGTCTAACCAGAGAACAGTCACGTCTTCTTGAAGAT 459 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 178 TCTGCTCCTCCGCGAAAGAAACTTCGTCTAACCAGAGAACAGTCACGTCTTCTCGAAGAT 237 Query 460 AGTTTCAGACAGAATCATACCCTTAATCCCAAACAAAAGGAAGTACTTGCCAAGCATTTG 519 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 238 AGTTTCAGACAGAATCATACCCTTAATCCCAAACAAAAGGAAGCACTTGCCAAGCATTTG 297 Query 520 ATGCTACGGCCAAGACAAATTGAAGTTTGGTTTCAAAACCGTAGAGCAAGGAGCAAATTG 579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 ATGCTACGGCCAAGACAAATTGAAGTTTGGTTTCAAAACCGTAGAGCAAGGAGCAAATTG 357 Query 580 AAGCAAACCGAGATGGAATGCGAGTATCTCAAAAGGTGGTTTGGTTCATTAACGGAAG-A 638 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 358 AAGCAAACCGAGATGGAATGCGAGTACCTCAAAAGGTGGTTTGGTTCATTAACGGA-GCA 416 Query 639 AAACCACAGGCTCCATAGAGAAGTAGAAGAGCTTAGAGCCATGAAGGTTGGCCCAACAAC 698 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 AAACCACAGGCTCCATAGAGAAGTAGAAGAGCTTAGAGCCATGAAGGTTGGCCCAACAAC 476 Query 699 GGTGAACTCTGCCTCGAGCCTTACTATGTGTCCTCGCTGCGAGCGAGTTACCCCTGCCGC 758 |||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| || Sbjct 477 AGTGAACTCTGCCTCGAGCCTCACTATGTGTCCCCGCTGCGAGCGAGTTACCACTGCAGC 536 Query 759 GAGCCCTTCGAGGGCGGTGGTGCCGGTTCCGGCTAAGAAAACGTTTCCGCCGCAAGAGCG 818 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 537 GAGCCCTTCGAGGGCGGTGGTGCCGGTTCCGGCCAAGAAAACGTTTCCGCCGCAAGAGCG 596 Query 819 TGATCGTTGA 828 ||||| |||| Sbjct 597 TGATCATTGA 606 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30612702351 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5