BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01450.1
Length=1766
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896073 jgi|Araly1|896073|Al_scaffold_0005_39 2396 0.0
> Ahg896073 jgi|Araly1|896073|Al_scaffold_0005_39
Length=1458
Score = 2396 bits (1297), Expect = 0.0
Identities = 1408/1462 (96%), Gaps = 5/1462 (0%)
Strand=Plus/Plus
Query 96 ATGTTGGAGAAAGAGTTTTTCACGGAGTATGGTGAAGCAAGTCAATATCAGATCCAAGAA 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTGGAGAAAGAGTTTTTCACGGAGTATGGTGAAGCAAGTCAATATCAGATCCAAGAA 60
Query 156 GTTGTTGGCAAAGGAAGCTACGGAGTTGTTGCTTCTGCGGAATGTCCACACACGGGAGGC 215
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTGTTGGCAAAGGAAGCTATGGCGTTGTTGCTTCTGCGGAATGTCCACACACGGGAGGC 120
Query 216 AAAGTAGCCATCAAGAAGATGACAAATGTGTTTGAACATGTCTCAGATGCTATTCGTATC 275
||||| || |||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 121 AAAGTGGCGATCAAGAAGATGACCAATGTGTTTGAACATGTTTCAGACGCTATTCGTATC 180
Query 276 CTCAGAGAGATCAAGCTTCTCAGGCTTCTTCGACATCCTGATATCGTGGAGATCAAGCAT 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCAGAGAGATCAAGCTTCTCAGGCTTCTTCGACATCCTGATATCGTGGAGATCAAGCAT 240
Query 336 ATCATGCTTCCTCCTTGTCGCAAGGAATTCAAAGATATATATGTTGTTTTTGAGTTGATG 395
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 241 ATCATGCTCCCTCCTTGTCGCAAAGAGTTCAAAGATATATATGTTGTTTTTGAGTTGATG 300
Query 396 GAGTCTGATCTTCACCACGTTCTTAAGGTAAATGACGACCTCACTCCTCAGCATCATCAA 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGTCTGATCTTCACCACGTTCTTAAGGTAAATGACGACCTCACTCCTCAGCATCATCAA 360
Query 456 TTCTTCTTGTACCAACTTCTTCGTGGCTTAAAATTCATGCACTCAGCTCATGTGTTCCAT 515
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 TTCTTCTTGTACCAACTTCTTCGTGGCTTAAAATTCATGCACTCAGCTCATGTCTTCCAT 420
Query 516 AGAGATCTGAAGCCTAAGAACATCCTCGCTAATGCTGATTGCAAAATCAAGATCTGTGAT 575
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 CGAGATCTGAAGCCTAAGAACATCCTCGCTAATGCTGATTGCAAGATCAAGATCTGTGAT 480
Query 576 TTAGGACTTGCTCGTGTCTCCTTTACTGATTCCCCTTCTGCTGTGTTT-TGGACTGACTA 634
||||||||||||||||||||||| ||||||||||||||||| || ||| |||||||||||
Sbjct 481 TTAGGACTTGCTCGTGTCTCCTTCACTGATTCCCCTTCTGCCGT-TTTCTGGACTGACTA 539
Query 635 CGTTGCTACAAGATGGTACCGTGCGCCAGAGCTCTGTGGTTCCTTCTATTCTAACTACAC 694
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 CGTTGCTACTAGATGGTACCGTGCGCCAGAGCTCTGTGGTTCCTTCTATTCTAATTACAC 599
Query 695 GCCGGCGATTGACATGTGGAGTGTTGGGTGCATATTTGCAGAGATGCTAACTGGAAAACC 754
||| ||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||
Sbjct 600 GCCAGCGATTGACATGTGGAGCGTTGGCTGCATATTTGCAGAGATGCTAATTGGAAAACC 659
Query 755 TTTGTTTCCTGGCAAAAACGTTGTGCACCAGCTAGAACTCGTGACTGATCTGCTTGGAAC 814
||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 660 TTTGTTTCCTGGCAAAAACGTTGTGCACCAGCTTGAACTCGTCACTGATTTGCTTGGAAC 719
Query 815 TCCGTCGCCGATAACTCTATCCAGGATTCGGAATGAGAAGGCTAGAAAGTATTTGGGAAA 874
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 720 TCCGTCGCCGATAACTCTATCCAGGATTCGCAATGAGAAGGCTAGAAAGTATTTGGGTAA 779
Query 875 CATGAGGCGAAAGGATCCTGTACCTTTCACCCATAAATTCCCCAATATCGATCCTGTGGC 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CATGAGGCGAAAGGATCCTGTACCTTTCACCCATAAATTCCCCAATATCGATCCTGTGGC 839
Query 935 GCTGAAGTTACTTCAGCGTTTGATCGCTTTTGACCCAAAGGACCGTCCCTCTGCAGAAGA 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCTGAAGTTACTTCAGCGTTTGATCGCTTTTGACCCAAAGGACCGTCCCTCTGCAGAAGA 899
Query 995 GGCATTGGCTGATCCGTATTTTCAAGGATTGGCAAATGTGGACTATGAACCATCGAGGCA 1054
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 900 GGCATTGGCTGATCCGTATTTTCAAGGATTGGCAAATGTTGACTATGAACCATCGAGGCA 959
Query 1055 ACCTATCTCGAAACTTGAGTTTGAGTTTGAGAGGAGGAAATTGACTCGCGATGACGTGAG 1114
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 960 ACCTATCTCGAAACTCGAGTTTGAGTTTGAGAGGAGGAAATTGACTCGGGATGATGTGAG 1019
Query 1115 GGAACTCATGTACAGAGAGATTTTGGAGTATCATCCACAGATGTTGCAAGAGTATCTACA 1174
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1020 GGAACTCATGTACAGAGAGATTTTGGAGTATCATCCACAGATGCTGCAAGAGTATCTACA 1079
Query 1175 AGGAGAAGAGAACATAAACTCTCATTTTCTATACCCAAGCGGAGTTGATCAGTTCAAACA 1234
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1080 AGGAGAAGAGAACATCAACTCTCATTTTCTATACCCGAGCGGAGTTGATCAGTTCAAACA 1139
Query 1235 AGAGTTTGCCCGACTCGAAGAACACAACGACGATGAAGAGGAACACAACTCCCCACCACA 1294
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1140 AGAGTTTGCCCGACTCGAAGAACACAACGACGATGAAGATGAACACAACTCCCCACCACA 1199
Query 1295 TCAGAGAAAGTACACTTCACTCCCTAGAGAACGGGTGTGCTCATCAGAAGACGAAGGTTC 1354
||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 1200 TCAGAGAAAGTACACTTCACTTCCTAGAGAACGGGTGTGCTCATCAGAGGATGAAGGTTC 1259
Query 1355 TGATTCAGTTCATGCTCAATCGTCTTCAGCTTCAGTGGTGTTTACACCTCCACAGACTCC 1414
|||||||||||| || | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1260 TGATTCAGTTCACGC--A-TCGTCTTCAGCGTCAGTGGTGTTTACACCTCCACAGACTCC 1316
Query 1415 AAACACAGCAACTGGCTTATCATCACAGAAGGCGTCACAAGTAGACAAAGCAGCAACTCC 1474
|||||||||||||||| |||| ||||||||| | |||| ||||||||||||||||||||
Sbjct 1317 AAACACAGCAACTGGCCTATCGTCACAGAAGACAACACAGGTAGACAAAGCAGCAACTCC 1376
Query 1475 GGTAAAACGGTCTGCATGTCTAATGAGGAGTGATAGTATCTGTGCTTCAAGATGTGTTGG 1534
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1377 GGTAAAACGGTCTGCATGTCTAATGAGGAGTGATAGTATCTGTGCATCAAGATGTGTCGG 1436
Query 1535 TGTCTCCTCTGCAGTGTCATAG 1556
|||||| ||||||||||| |||
Sbjct 1437 TGTCTCATCTGCAGTGTCTTAG 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66277026300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5