BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01460.1
Length=3022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322489 jgi|Araly1|322489|fgenesh1_pm.C_scaffold_5000033 2739 0.0
> Ahg322489 jgi|Araly1|322489|fgenesh1_pm.C_scaffold_5000033
Length=2838
Score = 2739 bits (1483), Expect = 0.0
Identities = 1619/1679 (96%), Gaps = 32/1679 (2%)
Strand=Plus/Plus
Query 1221 AGGTGTACCACGCTTGAATACACCTCCACTTTTGCAACCGTCTCCTGTAATCACTAACCA 1280
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1161 AGGTGTACCACGCTTGAATACACCTCCACTTTTGCAACCGTCTCCTGTAATCACCAACCA 1220
Query 1281 AGAGAAGCAAATTGTTGCACCAAAACCTATCCGAACTACCCCAAACATCGTTACCCGCCT 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 AGAGAAGCAAATTGTTGCACCAAAACCTATCCGAACTACCCCAAACATCGTTACCCGCCT 1280
Query 1341 TGAGGATTTATCGCAGCCTTGGACTAGATCTCCTACGAAATCCCAAATGGAACCGATGGT 1400
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1281 TGAGGATTTATCGCAGCCTTGGACTCGATCTCCTACGAAATCCCAAATGGAACCGATGGT 1340
Query 1401 TGCAACTTGGCATTTCACCTCTTATGATCCACCTCATTCAGTAAGCTCTGTAGT------ 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 TGCAACTTGGCATTTCACCTCTTATGATCCACCTCATTCAGTAAGCTCTGTAGTAGCCAC 1400
Query 1455 AGATTCCTCTTTCAGGGATAATATGCGGCTTGTTCCTATGCCTGATTCATACGACTTGGA 1514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 AGATTCCTCTTTCAGGGATAATATGCGGCTTGTTCCTATGCCTGATTCATACGACTTGGA 1460
Query 1515 TAGAGGGTTGCTACTTTCTGTTCAAGCAATACAGGCATTGCTGGAGAATAAGGGACCCCC 1574
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1461 TAGAGGGTTGCTACTTTCTGTTCAAGCAATACAGGCATTGCTGGAGAATAAAGGACCCCC 1520
Query 1575 TGTTATTGTTGGAATAGGTGGTCCTAGTGGGTCTGGTAAGACTAGCTTGGCTCATAAAAT 1634
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 TGTTATTGTCGGAATAGGTGGTCCTAGTGGGTCTGGTAAGACTAGCTTGGCTCATAAAAT 1580
Query 1635 GGCAAATATAGTTGGCTGTGAAGTGGTTTCCCTTGAAAGTTACTTCAAGTCTGAACAAGT 1694
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1581 GGCAAATATAGTTGGCTGTGAAGTGGTATCCCTTGAAAGTTACTTCAAGTCCGAACAAGT 1640
Query 1695 CAAAGATTTCAAGCATGACGACTTTAGTTCCCTTGATTTGCCTTTGCTCT-CAAAGAACA 1753
||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 1641 CAAAGATTTCAAGCATGACGATTTTAGTTCCCTTGATTTGCCTTTGCT-TGCAAAGAACA 1699
Query 1754 TTTCCGACATTACAAACAGTCGAAGAACCAAACTACCTATATTTGATTTGGAGACTGGCA 1813
||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 1700 TTTCCGACATTACAAACGGTCGAAGAACCAAACTGCCTGTATTTGACCTGGAGACTGGCA 1759
Query 1814 CCAGATGTGGCTTCAAGGAACTAGAAGTTCCTGAAGAGTGTGGTGTGATCATCTTCGAGG 1873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1760 CCAGATGTGGCTTCAAGGAACTAGAAGTTCCTGAAGAGTGTGGTGTGATCATCTTCGAGG 1819
Query 1874 GGGTTTATGCATTGCATCCAGAAATCAGACAATCTTTGGACCTTTGGGTTGCTGTTGTGG 1933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1820 GGGTTTATGCATTGCATCCAGAAATCAGACAATCTTTGGACCTTTGGGTTGCTGTTGTGG 1879
Query 1934 GAGGTGTTCATTCACATCTTATCTCTAGAGTCCAGAGGGATAAAAGCCGAATCGGGTGTT 1993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1880 GAGGTGTTCATTCACATCTTATCTCTAGAGTCCAGAGGGATAAAAGCCGAATCGGGTGTT 1939
Query 1994 TCATGTCTCAGAACGAGATAATGATGACCGTATTTCCAATGTTCCAGCAACACATCGAGC 2053
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1940 TCATGTCTCAGAATGAGATAATGATGACTGTATTTCCAATGTTCCAGCAACACATCGAGC 1999
Query 2054 CACATCTAGTGCATGCACATGTTAAGATTCGAAATGATTTTGATCCAGTTCTCTCTCCCG 2113
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2000 CACATCTAGTGCATGCACACGTTAAGATTCGAAATGATTTTGATCCAGTTCTCTCTCCCG 2059
Query 2114 AGAGCTCTTTGTTTGTATTGAAGAGCAATAAACAAGTTCCATATCAGGATATTCTCAGCA 2173
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2060 AGAGCTCTTTGTTTGTTTTGAAGAGCAATAAACAAGTTCCATATCAGGATATTCTCAGCA 2119
Query 2174 TCCTTGATTCGACAAAATTCTGCAGTTCCGTTCAGAATTTTATCGATATATATTTCAGGC 2233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2120 TCCTTGATTCGACAAAATTCTGCAGTTCCGTTCAGAATTTTATCGATATATATTTCAGGC 2179
Query 2234 TATCTGGGCTTCCTGCGAATGGTCAGTTGTCAGATAGTGACTGCATACGCGTAAGAATCT 2293
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2180 TGTCTGGGCTTCCTGCGAATGGTCAGTTGTCAGATAGTGACTGCATACGCGTAAGAATCT 2239
Query 2294 GCGAGGGCAGGTTTGCAGTGCTTATACGTGAGCCAATTAGGGAAGGGAACTTCATCATTC 2353
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2240 GCGAGGGCAGGTTTGCAGTTCTTATACGTGAGCCAATTAGGGAAGGGAACTTCATCATTC 2299
Query 2354 AGCCCAAAGTAGATTTTGACATTAGCGTAAGTACTGTGGCGGGTCTTCTTAATCTCGGGT 2413
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2300 AGCCCAAAGTAGATTTTGACATTAGCGTAAGTACTGTGGCGGGTCTTCTTAATCTTGGGT 2359
Query 2414 ATCAAGCAGTGGCATATATCGAAGCCTCTGCTTTCATTTACCAAGACGGAAAG-----G- 2467
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2360 ATCAAGCAGTGGCATATATCGAAGCCTCTGCTTTCATTTACCAAGACGGAAAGATTCTGA 2419
Query 2468 T-GA-----AT---------G-TG--CCAAGTCCATACATACAGATCAAAGGCGCTAACA 2509
| || || | || ||||||||||||||||||||||||||||| ||||
Sbjct 2420 TTGAGGTTGATCATCTCCAAGATGTGCCAAGTCCATACATACAGATCAAAGGCGCCAACA 2479
Query 2510 AAGAAGCAGTGACGGCTGCTGGTTCAGCTCTCAAACTAGATGGTTCATACACAACAAAGA 2569
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2480 AAGAAGCTGTGACGGCTGCTGGTTCAGCTCTCAAACTGGATGGTTCATACACAACAAAGA 2539
Query 2570 GTTACCTTCAAATAGTGTTGGAAAGACTGCCACCGGTCCAGAGAAGTTCAAGTGGAATAC 2629
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 2540 GTTACCTTCAAATAGTGTTGGAAAGACTGCCACCAGTGCAGAGAAGTTCAAGTGGAATCC 2599
Query 2630 ATACACAGCAAGCAGCGCGGTTGCAAGAGCTTGTGGAATTCATACAATCGCAGGGAAGTA 2689
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2600 ATACACAGCAAGCAGCGCGGTTGCAAGAGCTTGTGGAATTCATACAATCTCAGGGAAGTA 2659
Query 2690 GTAACAGTGTGTCGGAATCATCACCAAGAAGAGATGGTTCTTCCATAGACAACGTTTTAG 2749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2660 GTAACAGTGTGTCGGAATCATCACCAAGAAGAGATGGTTCTTCCATAGACAACGTTTTAG 2719
Query 2750 AAGATATGCAATCAAGAATTAAACGACTCGAACGTTGGCACACCATCAATACGGTACTAT 2809
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2720 AAGATATGCAATCGAGAATTAAACGACTAGAACGTTGGCACACCATCAATACGGTACTAT 2779
Query 2810 GGACATTTTTGATGTCTGCGCTCGTTGGTTACTCTCTCTACCAAAGGAAGCGTCAATAA 2868
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2780 GGACATTTTTGATGTCTGCGCTCGTTGGTTACTCTCTCTACCAAAGGAAGCGTCAATAA 2838
Score = 1230 bits (666), Expect = 0.0
Identities = 706/726 (97%), Gaps = 0/726 (0%)
Strand=Plus/Plus
Query 1 ATGGACGACGAGGTTGTTCAGCGAGTTTTCCAAGAAGGAGGACGAGATttcttccagcaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGACGACGAGGTTGTTCAGCGAGTTTTCCAAGAAGGAGGACGAGATTTCTTCCAGCAG 60
Query 61 caaccttctacttcttcttcctcttcttcgattcttcaatctcttcctcttcACGTGGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CAACCTTCTACTTCTTCTTCCTCTTCTTCGATTCTTCAATCTCTTCCTCTTCATGTGGCT 120
Query 121 TTCGATCATGGCTATTATCTGTTGGTGAAGTCCATTCAAGAGCTTAGAGAGAAGAAGGAC 180
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 121 TTCGATCATGGCTATTACCTGTTAGTTAAGTCCATTCAAGAGCTTAGAGAGAAGAAGGAC 180
Query 181 GGCATTGTTACTGTTGGTATTGGTGGACCTAGCGGCTCTGGTAAATCTAGCTTGGCAGAG 240
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 181 GGCATTGTTACTGTTGGTATCGGTGGACCTAGCGGCTCCGGTAAATCCAGCTTGGCAGAG 240
Query 241 AAAGTTGCATCTGTAATTGGCTGTACTGTTATTGCCATGGAAGATTACCGAGATAGTTTG 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 AAAGTTGCATCTGTAATTGGCTGTACTGTTATTGCAATGGAAGATTACCGAGATAGTTTG 300
Query 301 GACGATGGTAATGAGTTGGAAACATTAGATTTTGATGCTTTAGTCCAGAATTTGGAGGAT 360
|||||||| ||||| ||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 301 GACGATGGAAATGAATTGGAAACATTAGATTTTGATGCATTAGTCCAGAATCTGGAGGAT 360
Query 361 TTGATCAATGGAAAAGATACTCTTGCTCCGGTTTTTGATTTCCAGCAAAAGAAGCGTGTT 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGATCAAAGGAAAAGATACTCTTGCTCCGGTTTTTGATTTCCAGCAAAAGAAGCGTGTT 420
Query 421 GATTCCAAGATGGTGAAGACATCCTCTGGTGTGGTTATTGTTGATGGGACGTATGCTCTC 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 GATTCCAAGATGGTGAAGACATCATCTGGTGTGGTTATTGTTGATGGGACGTATGCTCTC 480
Query 481 CATGCAAGATTGCGTTCCTTACTGGATATTCGGGTTGCAGTGGTTGGGGGCGTTCATTTT 540
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 481 CATGCAAGATTGCGTTCCTTACTGGATATTCGGGTTGCAGTGGTCGGGGGAGTTCATTTT 540
Query 541 AGCCTTCTCTCTAAAGTCCGTTATGATATTGGAGATTCGTGTTCGCTTGATTACCTTATC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 AGCCTTCTCTCTAAAGTCCGTTATGATATTGGAGATTCGTGTTCGCTTGATTACCTCATC 600
Query 601 GACAGCATTTTCCCTTTGTTTAGAAAGCATATTGAGCCAGATCTTCATCATGCACAGATC 660
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 GACAGCATTTTCCCATTGTTTAGAAAGCATATTGAGCCAGATCTCCATCATGCACAGATC 660
Query 661 AGAATCAACAATAGTTTTGTTTCATCATTTCGGGAAGCCATATACAAATTGAAATGCAAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGAATCAACAATAGTTTTGTTTCATCATTTCGGGAAGCCATATACAAATTGAAATGCAAA 720
Query 721 ACTGAG 726
||||||
Sbjct 721 ACTGAG 726
Score = 320 bits (173), Expect = 4e-86
Identities = 184/189 (97%), Gaps = 1/189 (1%)
Strand=Plus/Plus
Query 993 GAGAGC-TTCAACTGCTGTCAGTTATGGTAATTTATCCCTATCACGTGAAACGATTGATA 1051
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 974 GAGAGCTTTCAACTGCTGTCAGTTATGGTAATTTATCCCTATCACGTGAAACGATCGATA 1033
Query 1052 CTCTTGGAGAGACTTTCCTGGTTCTGAGAGGGACAGATAGGAAGAGTGTGGGAGCTGAAG 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 CTCTTGGAGAGACTTTCCTGGTTCTGAGAGGGACAGATAGGAAGAGTGTGGGAGCTGAAG 1093
Query 1112 CTCTGAGAATGGGCATCACTGGGCCCTGGATCACGAAATCATACCTCGAACTGATCCTTG 1171
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1094 CTCTGAGAATGGGCATCACTGGGCCCTGGATCACCAAATCATACCTGGAACTGATCCTTG 1153
Query 1172 AAAGCAAAG 1180
|||| ||||
Sbjct 1154 AAAGTAAAG 1162
Score = 265 bits (143), Expect = 2e-69
Identities = 149/152 (98%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 781 ATGTACCTCAGACCACCTTCTGCAAGCGAAGAGGCACGGATAAATGACTGGATTAAAGTT 840
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 796 ATGTACCTCAGACCTCCTTCTGCAAGCGAAGAGGCACGGATAAATGACTGGATAAAAGTT 855
Query 841 CGTCAAGCTGGTATAAGGTACTATCTGTCACTTGGAGACCAAAGGATTGTTGACAAGCAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 CGTCAAGCTGGTATAAGGTACTATCTGTCACTTGGAGACCAAAGGATTGTTGACAAGCAT 915
Query 901 TTCATTATCCGGCCTAAAGCTGAGTTTGAGGT 932
|||||||||||||| |||||||||||||||||
Sbjct 916 TTCATTATCCGGCCGAAAGCTGAGTTTGAGGT 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114118374020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5