BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01480.1
Length=2610
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484066 jgi|Araly1|484066|fgenesh2_kg.5__58__AT2G01480.1 3592 0.0
Ahg471685 jgi|Araly1|471685|fgenesh2_kg.1__1639__AT1G14970.1 1498 0.0
> Ahg484066 jgi|Araly1|484066|fgenesh2_kg.5__58__AT2G01480.1
Length=2469
Score = 3592 bits (1945), Expect = 0.0
Identities = 2303/2464 (93%), Gaps = 72/2464 (3%)
Strand=Plus/Plus
Query 26 GGGCATGTGACTGATCACGGCTTTGCCTCCACCGCATAAAGCTCCCTTCACAGATACA-T 84
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1 GGGCATGTGACTGATCACGGCTTTGCCTCCACCGCATAAAGCTCCCTTCACAGATAGATT 60
Query 85 ACACTCTCTTTCTCTCTCTTCCGGCGTTT-ATTCTTCTTATTTCGCCACCGTCCTCCGCC 143
||||||||||||||||||| ||||||||| ||| |||| ||||| | ||||| |||||||
Sbjct 61 ACACTCTCTTTCTCTCTCTCCCGGCGTTTAATT-TTCTAATTTCACAACCGTGCTCCGCC 119
Query 144 GCCG--T--G--GT--GGACTTATATCTCTG-C-GTTTCACGACCTGCCGCCACCGCCGG 193
|||| | | || ||||||||||| | | | |||||||||||||||||||||||||
Sbjct 120 GCCGTCTCCGCCGTGGGGACTTATATCGCCGCCTATTTCACGACCTGCCGCCACCGCCGG 179
Query 194 CGATAGGTTTCAATGATGAATTAAGGCGTTG--GCCagagagaga-aga-g-a--gaTTG 246
|||||||||| |||||||||||||||||||| | ||||||||| ||| | | |||||
Sbjct 180 CGATAGGTTT-AATGATGAATTAAGGCGTTGTCGAGAGAGAGAGAGAGAGGAAGGGATTG 238
Query 247 AGATCTGTCGATATGCTAGCGAAGAATCGGCTGCCGGGAAGCGGCCACACTACTCCGTCT 306
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 239 AGATCTGTCGATATGCTAGCGAAAAATCGGCTGCCGGGAAGCGGCCACACTACTCCGTCT 298
Query 307 CCTCCGGCATCTCCTCGCCGTTCTCCTCGTTATCGTCACGGTCGGTCTAAAGCCGCCGCC 366
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 299 CCTCCGGCGTCTCCTCGCCGTTCTCCTCGTTACCGTCACGGTCGGTCTAAAGCCGCCGCC 358
Query 367 GGTAGTAGATTTCCTACGGTTCAACCAAGTCGGACCCTCGCTCATCGCCTCTCGTGGATC 426
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 359 GGTAGTAGATTTCCTACGGTTCAACCAAGTCGGACCCTCGCTCATCGTCTCTCTTGGATC 418
Query 427 CTCTTATCGGTTCTTCTCCGTCGTCAGGGGATTTTCTTATTCGCTCCTCTAATCTATATC 486
||||||||||||||||||||||| ||||| || ||| |||||||||||||||||||||||
Sbjct 419 CTCTTATCGGTTCTTCTCCGTCGCCAGGGAATATTCCTATTCGCTCCTCTAATCTATATC 478
Query 487 TCTTGTATGCTGCTTTACATGGGAACCGTCTCCTTCGACGTTGTTCCAATCATTCAGCGT 546
||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 479 TCTTGTATGCTCCTTTACATGGGAACCGTCTCGTTCGATGTTGTTCCAATCATACAGCGT 538
Query 547 CGACCTCCTCCAGGATCCGTTTACAAAAGCCCTCAGGTTTACGCCAAGCTCCGTCCTGAG 606
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CGACCTCCGCCAGGATCCGTTTACAAAAGCCCTCAGGTTTACGCCAAGCTCCGTCCTGAG 598
Query 607 ATGGACGCCGATAATTCCACCGCTGATGCCATAACAACCATCTGGAAACATTCCTATAAA 666
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 599 ATGGACGCCGATAATTCCACCGCTGATGCCATAACAACCATTTGGAAACATTCCTATAAA 658
Query 667 GGTGGTGAATGGAAGCCGTACGTGAACAAGTCTACTGGAGACTTGCCTGAGTCAAACGGT 726
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 659 GGTGGTGAATGGAAGCCCTACGTGAACAAGTCTACTGGAGACTTGCCCGAGTCAAACGGT 718
Query 727 TACATATATGTTGAGGCAAATGGAGGCTTGAATCAGCAGCGGACATCGATATGCAATGCG 786
| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTCATATATGTCGAGGCAAACGGAGGCTTGAATCAGCAGCGGACATCGATATGCAATGCG 778
Query 787 GTTGCTGTGGCAGGATATCTTAATGCAACTCTAGTAATTCCCAACTTTCACTATCACAGC 846
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTTGCTGTGGCAGGCTATCTTAATGCAACTCTAGTAATTCCCAACTTTCACTATCACAGC 838
Query 847 ATATGGAGAGATCCAAGTAAATTTGGGGACATCTACGATGAAGAGTTCTTTGTCAGTACC 906
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 839 ATATGGAGAGATCCAAGTAAATTTGGGGACATCTACGATGAAGATTTCTTTGTTAGTACC 898
Query 907 TTATCAAATGATGTGCGGGTGGTTGATACAATTCCTGAATATCTAATGGAGCGTTTTGAC 966
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTAGCAAATGATGTGCGGGTGGTTGATACAATTCCTGAATATCTAATGGAGCGTTTTGAC 958
Query 967 CATAACATGACAAATGTCTATAACTTCAGAGTTAAAGCATGGTCACCTATTCAATATTAT 1026
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TACAACATGACAAATGTCTATAACTTCAGAGTTAAAGCATGGTCACCTATTCAATATTAT 1018
Query 1027 CGAGACTCGATCTTGCCGAAACTTCTTGAGGAGAAGATTATACGAATATCTCCATTTGCA 1086
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1019 CGAGACTCGATCTTGCCGAAGCTGCTTGAGGAGAAGATTATACGAATATCTCCATTTGCA 1078
Query 1087 AATAGACTTTCTTTTGATGCTCCTCAAGCTGTCCAGAGACTTAGATGTTTGGCGAATTAC 1146
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1079 AATAGACTTTCTTTTGATGCTCCGCAAGCTGTCCAGAGACTTAGATGTTTGGCGAATTAT 1138
Query 1147 GAAGCCCTGAAGTTTTCGAAAACCATACTAACCCTAGGAGAAACACTGGTGAAGAGAATG 1206
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GAAGCCCTGAAGTTTTCGAAACCCATACTAACCCTAGGAGAAACACTGGTGAAGAGAATG 1198
Query 1207 AAAGAGCAAAGTGCAAACCACGGTGCAAAATACGTGTCTGTACATCTGCGTTTTGAAGAG 1266
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1199 AAAGAGCAAAGTGCAAACCACGGCGCAAAATACGTTTCTGTACATCTGCGTTTTGAAGAG 1258
Query 1267 GACATGGTAGCTTTCTCCTGTTGCATATTTGATGGTGGGAACCAAGAAAAACAAGATATG 1326
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GACATGGTAGCTTTCTCTTGTTGCATATTTGATGGTGGGAACCAAGAAAAACAAGATATG 1318
Query 1327 ATTGCAGCAAGAGAACGAGGATGGAAAGGAAAGTTCACAAAACCAGGCCGTGTTATACGA 1386
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1319 ATTGCAGCAAGAGAAAGAGGATGGAAAGGAAAGTTCACAAAACCAGGTCGTGTTATACGA 1378
Query 1387 CCTGGTGCTATCAGGCAAAACGGAAAATGCCCTTTAACTCCTTTAGAGGTGGGTTTAATG 1446
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1379 CCTGGTGCTATCAGGCAAAACGGAAAATGCCCTTTGACTCCTTTAGAGGTGGGTTTAATG 1438
Query 1447 CTTAGAGGAATGGGGTTCAACAAAAGCACATATATTTTCCTCGCGTCTGGTGAAATATAT 1506
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1439 CTTAGAGGAATGGGGTTCAACAAAAGCACATATATTTACCTTGCGTCTGGTGAAATATAT 1498
Query 1507 GATGCGAATCGAACTATGGCCCCGCTACTAGAGATGTTCCCAAATTTACAAACTAAGGAG 1566
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1499 GACGCGAATCGAACTATGGCCCCGCTACTAGAGATGTTCCC-AATTTACAAACTAAGGAG 1557
Query 1567 ATGCTTGCATCAGAGGAGGAACTTGCTCCATATAAG-AATTTCTCTTCCAGAATGGCTGC 1625
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1558 ATGCTTGCATCAGAGGAGGAACTTGCTCCATATAAGAAACTTCTCTTCCAGAATGGCTGC 1617
Query 1626 AATAGATTACACGGTCTGTCTCCACAGTGAGGTATTTGTGACCACGCAAGGTGGAAACTT 1685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 AATAGATTACACGGTCTGTCTCCACAGTGAGGTATTTGTGACCACGCAAGGTGGAAACTT 1677
Query 1686 TCCTCATTTCCTCATGGGTCATCGGAGATATATGTTTGGAGGACATTCCAAGACCATTAG 1745
||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1678 TCCTCATTTTCTCATGGGTCATCGGAGATATTTGTTTGGAGGACATTCGAAGACCATTAG 1737
Query 1746 ACCAGACAAGCGAAAGTTAGCAATCCTCTTTGACAATCCAAACATCGGATGGCGGAGTTT 1805
||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1738 ACCGGACAAGCGAAAGTTAGCAATTCTCTTTGACAATCCCAACATCGGATGGCGGAGTTT 1797
Query 1806 TAAACGTCAGATGCTAAACATGAGGTCTCATAGTGACTCAAAGGGGTTTGAGCTAAAACG 1865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 TAAACGTCAGATGCTAAACATGAGGTCTCATAGTGACTCAAAGGGGTTTGAGCTAAAACG 1857
Query 1866 ACCTAATGACTCCATTTACACATTCCCTTGCCCTGACTGCATGTCCCGTAGGAACAAAAC 1925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 ACCTAATGACTCCATTTACACATTCCCTTGCCCTGACTGCATGTCCCGTAGGAACAAAAC 1917
Query 1926 AACAACCCCAGAATCGAGACCACCTCCTGCCACCTGAAA-ACACACATTTGATTACCGGC 1984
|||||||||||| || ||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1918 AACAACCCCAGATTCCAGACCACCTCCTGTCACCTGAAACACACACATTTGATTACCGGC 1977
Query 1985 CTTCCAGAATCTGCTTCTACAGGCTACGTTCATTCCTTGTAATTCTAATTCTTTCAAATC 2044
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1978 CTTCCAGAATCCGCTTCTACAGGCTATGTTCATTCCTTGTAATTCTAATTCTTTCAAACC 2037
Query 2045 AGACACAGGACCTTAGTGACTCGGCCTGCCCAGAATTTTAGGGAAGACAGCGTTTGAATG 2104
||||| |||| ||||| |||||||||||||||||||||||||| ||||||||||||| |
Sbjct 2038 AGACA--GGAC-TTAGTAACTCGGCCTGCCCAGAATTTTAGGGA-GACAGCGTTTGAAGG 2093
Query 2105 GGCCGTGGAATCATCTATTTATTCTCC-GG--------C-GAGGAGTAACAGCCACAACA 2154
||||| ||||| ||||||||| |||| || | ||||||||||||||||||||
Sbjct 2094 GGCCGCAGAATCGTCTATTTAT-CTCCAGGGAGGTTAGCCGAGGAGTAACAGCCACAACA 2152
Query 2155 TTGTTTGATACCTTTGACACATTGAAGCTGATGTATCTAACAGGAAAGACGAGATTGAAG 2214
||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 2153 TTGTTTGATACTTTTGACACATTGAAGCTGATGTATCTAACAGGAGAGACAAGATTGAAG 2212
Query 2215 TTTTAACACATTCCCTAGCTGCTGCTGGGCAAAGAATAGGACAGCgtttggattttggtg 2274
|||||||| | | || | | | | | | ||| ||||| | | |
Sbjct 2213 TTTTAACAGAAT----AG--GA--CAG--C---GTTT-GGAT----TTTGG-T---G-T- 2248
Query 2275 tttttttcttggggtgttttggtggtttgaagaagcgtttgcgttttgtacattttGTGA 2334
|||| | |||||||||||||| ||||||||| ||||||||||||||||||||||| |
Sbjct 2249 TTTTATGCTTGGGGTGTTTTGC-GGTTTGAAG---CGTTTGCGTTTTGTACATTTTGTAA 2304
Query 2335 ACGCAGGCTTTGTGTTAGGAGATATGTAGAGAGAGACGGACAAGGGGGAGAAAAGAAGCT 2394
|||||| ||||||||||||||||||||||||||| |||||||||| | | | ||||||
Sbjct 2305 ACGCAGTCTTTGTGTTAGGAGATATGTAGAGAGA--CGGACAAGGG--ATATAGGAAGCT 2360
Query 2395 GCCCTAAAAGTTTTGTACATT-GATTTGGTTAGAGATCATTGtctcttcttttcttttct 2453
|||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 2361 GCCCGAAAAGTTTTGTACATTTGATTTGGTTAGAGATCATTGTGTCTTCTTTTCTTTTCT 2420
Query 2454 tttc 2457
||||
Sbjct 2421 TTTC 2424
> Ahg471685 jgi|Araly1|471685|fgenesh2_kg.1__1639__AT1G14970.1
Length=1823
Score = 1498 bits (811), Expect = 0.0
Identities = 1315/1557 (84%), Gaps = 40/1557 (3%)
Strand=Plus/Plus
Query 393 AAGTCGGACCCTCGCTCATCGCCTCTCGTGGATCCTCTTATCGGTTCTTCTCCGTCGTCA 452
||| |||||| ||||||| || |||||||||||||| ||||||||||||||||| |||||
Sbjct 135 AAGCCGGACCGTCGCTCACCGTCTCTCGTGGATCCTTTTATCGGTTCTTCTCCGGCGTCA 194
Query 453 GGGGATTTTCTTATTCGCTCCTCTAATCTATATCTCTTGTATGCTGCTTTACATGGGA-A 511
||| ||| |||||||||||||||| ||||| |||| |||||||| ||| || | |
Sbjct 195 GGGAATTCTCTTATTCGCTCCTCTCATCTACGTCTCCTGTATGCT--TTTTCA-CCTACA 251
Query 512 C-CGTC-TCCTTCGACGTTGT-TCCAATCATTCAGCGTCGACCTCCTCCAGGATCCGTTT 568
| || | || || || | | || || || || || || ||| |||| ||||| || |
Sbjct 252 CGCGGCGTCGTTTGATG-CCTCACCCATTATCCACCGCCGTCCTGCTCCGGGATCTGTCT 310
Query 569 ACAAAAGCCCTCAGGTTTACGCCAAGC-TC-CGTCCTGAGATGGACGCCGATAATTCCAC 626
| | |||||||||||||||||| | || || || | ||||| || || |||||| ||||
Sbjct 311 ATAGAAGCCCTCAGGTTTACGCTAGGCTTCGCG-GC-GAGATTGAGGCTGATAATACCAC 368
Query 627 CGCTGATGCCATAACAACCATCTGGAAACATTCCTATAAAGGTGGT-GAATGGAAGCCGT 685
|||||||| ||| |||| || ||||| | ||||||||||||| || ||||||||||| |
Sbjct 369 GGCTGATGCGATATCAACAATTTGGAAGCGTTCCTATAAAGGT-GTAGAATGGAAGCCAT 427
Query 686 ACGTGAACAAGTCTACTGGAGACTTGCCTGAGTCAAACGGTTACATATAT-GTTGAGGCA 744
|||||||| |||||||||| || |||||||| || |||| ||||| | ||||||||
Sbjct 428 GTGTGAACAAATCTACTGGAGTTTTACCTGAGTCTAATGGTTTCATAT-TCATTGAGGCA 486
Query 745 AATGGAGGCTTGAATCAGCAGCGGACATCGATATGCAATGCGGTTGCTGTGGCAGGATAT 804
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 487 AATGGAGGCTTGAATCAGCAGCGGACTTCGATATGCAATGCGGTTGCTGTGGCAGGCTAC 546
Query 805 CTTAATGCAACTCTAGTAATTCCCAACTTTCACTATCACAGCATATGGAGAGATCCAAGT 864
|||||||| || || |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 547 CTTAATGCGACCCTTGTAATTCCCAACTTTCACTATCACAGCATATGGAAAGATCCGAGC 606
Query 865 AAATTTGGGGACATCTACGATGAAGAGTTCTTTGTC-AGTACCTTATCAAATGATGTGCG 923
||||||||||||||||| ||||| || | |||||| | ||||||| |||||||||||||
Sbjct 607 AAATTTGGGGACATCTATGATGAGGAATACTTTGTTGA-TACCTTAGCAAATGATGTGCG 665
Query 924 GGTGGTTGATACAATTCCTGAATATCT-AATGGAGCGTTTTGACCATAACATGACAAATG 982
|||||| |||||| |||||||||| || |||||||||||||||| ||||| |||||||||
Sbjct 666 GGTGGTCGATACAGTTCCTGAATA-CTTAATGGAGCGTTTTGACTATAACTTGACAAATG 724
Query 983 TCTATAACTTCAGAGTTAAAGCATGGTCACCTAT-TCAATATTATCGAGACTC-GATCTT 1040
|||| ||||||||||||||||||||| |||| | || ||||| || ||||| | || |
Sbjct 725 TCTACAACTTCAGAGTTAAAGCATGGGCACCCACCTCC-TATTACCGGGACTCAG-TCCT 782
Query 1041 GCCGAAA-CTTCTTGAGGAGAAGATTATACGAATATCTCCATTTGCAAATAGACTTTCTT 1099
||| ||| || ||||| || ||| ||||| |||| || |||||||||||||||||||| |
Sbjct 783 GCC-AAAGCTGCTTGAAGAAAAGGTTATAAGAATTTCCCCATTTGCAAATAGACTTTCGT 841
Query 1100 TTGATGCTCCTCAAGCTGTCCAGAGACTTAGATGTTTGGCGAATTACGAAGCCCTGA-AG 1158
|||||||||||| ||||||||||||| ||||||||||||||||| | | |||| || |
Sbjct 842 TTGATGCTCCTCGAGCTGTCCAGAGATTTAGATGTTTGGCGAATAATGTAGCCTTGCGA- 900
Query 1159 TTTTCGAAAACC-ATACTAACCCTAGGAGAAACACTGGTGAAGAGAATGAAAGAGCAAAG 1217
||||| |||||| ||||| |||| ||| |||||| ||||||| | |||||| |||| ||
Sbjct 901 TTTTC-AAAACCCATACTGACCCAAGGTGAAACATTGGTGAACAAAATGAAGGAGCTTAG 959
Query 1218 TGCAAACCACGGTGCAAAATACGTGTCTGTACATCTGCGTTTTGAAGAGGACATGGTAGC 1277
||||||| ||| | ||||| || || || ||||| |||||||||||||| ||||| ||
Sbjct 960 TGCAAACAACGCCGGGAAATATGTTTCCGTGCATCTTCGTTTTGAAGAGGATATGGTCGC 1019
Query 1278 TTTCTCCTGTTGCATATTTGATGGTGG-GAACCAAGAAAAACAAGATATGATTGCAGCAA 1336
||||| ||||| ||||||||||||| || ||||||||||||||| |||||||| || |
Sbjct 1020 GTTCTCTTGTTGTGTATTTGATGGTGGAGA-CCAAGAAAAACAAGACATGATTGCCGCGA 1078
Query 1337 GAGAACGAGGATGGAAAGGAAAGTTCACAAAACCAGGCCGTGTTATACGACCTGGTGCTA 1396
||||||||||||||||||| |||||||||||||| |||||||| |||||||| || ||||
Sbjct 1079 GAGAACGAGGATGGAAAGGGAAGTTCACAAAACCGGGCCGTGTGATACGACCAGGAGCTA 1138
Query 1397 TCAGGCAAAACGGAAAATGCCCTTTAACTCCTTTAGAGGTGGGTTTAATGCTTAGAGGAA 1456
||||| || || |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1139 ACAGGCTCAATGGGAAATGCCCTTTAACTCCTTTAGAGGTTGGTTTGATGCTTAGAGGAA 1198
Query 1457 TGGGGTTCAACAAAAGCACATATATTTTCCTCGC-GTCTGGTGAAATATATGATGCG-AA 1514
|||| ||||||||||| |||||||| | ||| || | |||| |||||| | ||| ||
Sbjct 1199 TGGGCTTCAACAAAAGTACATATATATACCTTGCCG-CTGGCCCGATATAT-A-GCGCAA 1255
Query 1515 -TCGAACTATGGCCCCGCTACTAGAGATGTTCCCAAATTTACAAACTAAGGAGATGCTTG 1573
| |||||||||| || ||||| ||||||||||| ||| |||| || |||||||||||||
Sbjct 1256 ATAGAACTATGGCTCCACTACTCGAGATGTTCCCTAATCTACAGACGAAGGAGATGCTTG 1315
Query 1574 CATCAGAGGAGGAACTTGCTCCATATAAGAATTTCTCTTCCAGAATGGCTGCAATAGATT 1633
| || ||||| ||||| ||||| | |||||| ||||| || |||||||||||| ||||||
Sbjct 1316 CTTCTGAGGAAGAACTGGCTCCTTTTAAGAACTTCTCCTCGAGAATGGCTGCAGTAGATT 1375
Query 1634 ACACGGTCTGTCTCCACAGTGAGGTATTTGTGACCACGCAAGGTGGAAACTTTCCTCATT 1693
||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 1376 ACACGGTGTGTCTCCACAGTGAGGTATTTGTGACAACACAAGGTGGAAACTTCCCTCATT 1435
Query 1694 TCCTCATGGGTCATCGGAGATATATGTTTGGAGGACATTCCAAGACCATTAGACCAGACA 1753
|||||||||| ||| |||| ||| |||||||||||||||| ||||| ||| | |||||||
Sbjct 1436 TCCTCATGGGGCATAGGAGGTATTTGTTTGGAGGACATTCAAAGACGATTCGGCCAGACA 1495
Query 1754 AGCGAAAGTTAGCAATCCTCTTTGACAATCCAAACATCGGATGGCGGAGTTTTAAACGTC 1813
||||||||||||| | |||||||||||||| || | |||||| ||||||||||| |
Sbjct 1496 AGCGAAAGTTAGCCGTACTCTTTGACAATCCCAAGTTGGGATGGAAAAGTTTTAAACGGC 1555
Query 1814 AGATGCTAAACATGAGGTCTCATAGTGACTCAAAGGGGTTTGAGCTAAAACGACCTAA-T 1872
| ||||||| ||||||||| ||||||||||| |||||||||||||| |||||| | || |
Sbjct 1556 AAATGCTAAGCATGAGGTCCCATAGTGACTCCAAGGGGTTTGAGCTGAAACGATC-AAGT 1614
Query 1873 GACTCCATTTACACATTCCCTTGCCCTGACTGCATGTCCCGTAGGAACAAAACAACA 1929
||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||
Sbjct 1615 GACTCCATTTACATATTCCCTTGCCCTGACTGCATGTGCCGGAAGAACAAAACAACA 1671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98425193080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5