BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01490.1
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484067 jgi|Araly1|484067|fgenesh2_kg.5__59__AT2G01490.1 1720 0.0
> Ahg484067 jgi|Araly1|484067|fgenesh2_kg.5__59__AT2G01490.1
Length=1131
Score = 1720 bits (931), Expect = 0.0
Identities = 1072/1136 (94%), Gaps = 26/1136 (2%)
Strand=Plus/Plus
Query 39 ATCAATTTCCCGGCGAAA--TCT-CC---ACCA--GAGTTATGGGAATCACCGGAAGTCT 90
|||||||||||||||||| ||| || |||| | |||||||||||||||||||||||
Sbjct 1 ATCAATTTCCCGGCGAAATCTCTACCGGAACCACCGCGTTATGGGAATCACCGGAAGTCT 60
Query 91 AACGCCAGATCAGCTCGA-TTTTTTCCACTCTCAAGGGTATTTGGTAATCGAATCGTTCG 149
||| |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 AACTCCAGATCAGCTCCAGTTTTTT-CACTCTCAAGGGTATTTGGTAATCGAATCGTTCG 119
Query 150 CGAGTGAGGATGAGATAAGAGGCTTAAGGAAGAGGATGGATGAGTTGCTTAATCAGTTTG 209
||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 120 CGAATGAGGATGAGATTAGAGGCTTAAGGAAGAGGATGGACGAGTTGCTTAATCAGTTTG 179
Query 210 ATTGTTCCG--TC-TCCTCTATCTTCTCCACCAAAAATCAGAAGCACACCACAGATAATT 266
||||||||| || ||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 180 ATTGTTCCGTCTCGTCCTCTATCTTCTCCACTAAGAATCAGAAGCACACCACCGATAATT 239
Query 267 ACTTCTTTGAGAGCGCTGAGAAAATCTCCTTCTTCTTTGAAGAAAAAGCTTTTGGTGATG 326
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 ACTTCTTTGAGAGCGCTCAGAAAATCTCCTTCTTCTTTGAAGAAAAAGCTTTTGCTGATG 299
Query 327 ATGGGAAATTGAAGCAACCCAAACAACTCTCTATAAACAAAGTTGGGCATGCACTGCATG 386
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 ATGGGAAATTGAAGCAACCCAAAGAACTCTCTATAAACAAAGTTGGGCATGCACTGCATG 359
Query 387 AGCTTGACCCATTGTATAAGGATTTCACATATTCGTCAAAGTTTTCAAGTTTGGCATCAT 446
|||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||
Sbjct 360 AGCTTGACCCATTGTATAAGGAATTCACATATTCGTCCAAGTTTTCAAGTTTGGTGTCAT 419
Query 447 CCTTAGGTTACAGGAGACCAGTTGTCATGCAGTCTATGTATATTTTCAAGCAACCTGGAA 506
|||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 420 CCTTAGGTTACAAGAGACCAGTAGTCATGCAGTCTATGTACATTTTCAAGCAACCTGGAA 479
Query 507 TTGGAGGCGAAGTTGTGCCGCACCAAGATAATTCTTTTGTGTACACGGATCCACAGAGTT 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTGGAGGCGAAGTTGTGCCGCACCAAGATAATTCTTTTGTGTACACGGATCCACAGAGTT 539
Query 567 GTACTGGTCTCTGGATTGCTCTTGAAGATTCTACATTAGTTAATGGTTGTCTTTGGGCAA 626
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 540 GTACTGGTCTCTGGATTGCTCTGGAAGATTCTACAACAGTTAATGGTTGTCTTTGGGCAA 599
Query 627 TTCCTGGATCTCATAAGAATGGTTTAGTTAGAAGGTTTATCCGTGGTGACAACGGTATAA 686
||||||||||||||||||||||||||||||||||||||||||| || || |||||| |||
Sbjct 600 TTCCTGGATCTCATAAGAATGGTTTAGTTAGAAGGTTTATCCGGGGGGAAAACGGTGTAA 659
Query 687 CCTTTGATCAGCCATCCCCATCTTACGAGCAGAAAGATTTTGTGTCTATTGAAATGAAAG 746
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 660 CCTTTGATCAGCCATCCCCATCCTACGAGCAGAAAGATTTCGTGTCTATTGAAATGAAAG 719
Query 747 CAGGCTCATTGATTGCCATTCATGGTGATCTAATCCATCAAAGTTTCGAGAATCTATCCT 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CAGGCTCATTGATTGCCATTCATGGTGATCTAATCCATCAAAGTTTCGAGAATCTATCCT 779
Query 807 CGAAGTCAAGACATGCCTATAGCTTACATGTAGTAGAATCTGATGGATGTAAATGGGCAA 866
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 780 TGAAGTCAAGACATGCCTATAGCTTACATGTAGTAGAATCTGATGGATGTAAGTGGGCAA 839
Query 867 AAGACAACTGGATACAAAGAGCAAAAATGCCGGAGCCTCTCTATGTTCTTCCTTGATTCA 926
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 AAGACAACTGGATACAAAGAGAAAAAATGCCGGAGCCTCTCTATGTTCTTCCTTGATTCA 899
Query 927 -AGCCAGTCGTGGAAAAACACTGTGAGTTACTGTTTATCAAATTTCTTTTA--A-GATC- 981
| |||||||||| ||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 900 CA-CCAGTCGTGGGAAAACACTGTGAGTTACTGTTTATCAAATTTCTTTTATGATGATCT 958
Query 982 AC----TATCTTTGTGAGAACTATGAACAGTAATAAGAACATGGCTAAAAGGGCCTTCTT 1037
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 959 ACCCACTATCTTTGTGAGAACTTTGAACAGTAATAAGAACATGGCTAAAAGGGCCTTCTT 1018
Query 1038 GTGTCGTTTACTTGTTGAAATACAATTTGTTTCTTCTTGGTCTCTGTAGTTCTGTCTTTA 1097
||||| ||||||||||||| |||||||||||| | |||||||||||||||| |||||||
Sbjct 1019 GTGTCATTTACTTGTTGAA-TACAATTTGTTTATGCTTGGTCTCTGTAGTT--GTCTTTA 1075
Query 1098 AATAACCAAACTCTGTGGTCAATAAAGTGTGACAGTGATTACTTGATGTTTCTTTG 1153
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GATAACCAAACTCAGTGGTCAATAAAGTGTGACAGTGATTACTTGATGTTTCTTTG 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43002650376
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5