BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01500.1
Length=1325
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484068 jgi|Araly1|484068|fgenesh2_kg.5__60__AT2G01500.1 1705 0.0
> Ahg484068 jgi|Araly1|484068|fgenesh2_kg.5__60__AT2G01500.1
Length=1333
Score = 1705 bits (923), Expect = 0.0
Identities = 1219/1351 (90%), Gaps = 63/1351 (5%)
Strand=Plus/Plus
Query 1 AGCCTTTTCATCTCTCTTGCATCACAAGTAAACCTCTCATCATTCATTTCCACACAGCAC 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AGCCTTTTCATCTCTCTTGCATCACAAGTAAACCTCTCATCATTCATTCCCACACAGCAC 60
Query 61 TGAAACTCGAGCATTTGCTCTCTCGAATCCCATTTCCCTAGCTAAAAGGTTCGGAATT-C 119
|||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||| |
Sbjct 61 TGAAACTCAAGCATTTTCTCTCTCAAATCCCATTTCCCTAGCTAAAAGGTTCAAAATTCC 120
Query 120 -C----ACAACAACAACAAAAGACCTATTTTGTGAATCTTTTCTCTAAATTAAGAGTTAT 174
| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 121 ACAATAACAACAACAACAAAAGACCTATTTTGTGAATCTTTTCTCTAAATTAAAAGTGAT 180
Query 175 TAGGGCAAATTTCTACATAGCATGGGCTACATCTCCAACAACAACCTCATCAACTATTTG 234
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TAGGGCAAACTTCTACATAGCATGGGCTACATCTCCAACAACAACCTCATCAACTATTTG 240
Query 235 CCCCTCTCTACTACTCAACCTCCTCTTCTTCTCAC-C-C-ACTGTGATATTAACGGCAAT 291
||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||
Sbjct 241 CCCCTCTCTACTACTCAACCTCCTCTTCTTCTCCCACACTACTGTGATATTAACGGCAAT 300
Query 292 GATCACCATCAGCTCATAACCGCATCATCAGGAGAACACGATATTGATGAACGGAAAAAC 351
||||||||||||||||| || |||||||||||||||| |||| ||||| ||||||||
Sbjct 301 GATCACCATCAGCTCATCACTGCATCATCAGGAGAACTCGAT---GATGATCGGAAAAAT 357
Query 352 AACATTCCTGCGGCGGCGACTTTGAGATGGAATCCGACGCCAGAGCAGATCACGACGCTA 411
|||||||||||| ||||||||| |||||||||||||| || ||||||||||||| ||||
Sbjct 358 AACATTCCTGCGACGGCGACTTCAAGATGGAATCCGACACCCGAGCAGATCACGATGCTA 417
Query 412 GAAGAGCTTTACA-GAAGCGGAACACGGACGCCGACGACGGAACAGATCCAACAGATAGC 470
||||||||||||| || ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 418 GAAGAGCTTTACATGA-GCGGAACACGGACACCGACGACGGAACATATCCAACAGATAGC 476
Query 471 ATCTAAGCTTCGTAAATATGGGAGAATCGAAGGGAAGAACGTTTTCTATTGGTTTCAGAA 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ATCTAAGCTTCGTAAATATGGGAGAATCGAAGGGAAGAACGTTTTCTATTGGTTTCAGAA 536
Query 531 TCATAAGGCTAGAGAGAGACTAAAACGCCGCCGTCGTGAAGGTGGTGCTATTATCAAACC 590
|||||||||||| |||||||||||||| |||||| ||||||| |||||| ||| ||||||
Sbjct 537 TCATAAGGCTAGGGAGAGACTAAAACGACGCCGTTGTGAAGGAGGTGCTCTTAACAAACC 596
Query 591 ACATAAAGACGTCAAGGATTCATCATCAGGTGGTCATCGAGTTGATCAGACAAAGCTCTG 650
||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 597 ACATAAAGATGTCAAGGATTCATCATCAGGTGGTTATCGAGTTGATCAGACAAAGAGCTG 656
Query 651 CCCATCTTTTCCACACACAAACCGACCACAGCCACAGCATGAATTAGATCCTGCGAGTTA 710
||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |
Sbjct 657 CCCATCTCTTCCACACACAAACC--C-ACAGCCACAGCATGAATTAGATCCTGCGAGTAA 713
Query 711 CAATAAAGACAACAATGCTAATAATGAAGATCATGGGAC-GACTGAAGAATCTGATCAGA 769
||||||||||||||||||||| ||||||||||||||||| | |||||||||||| | ||
Sbjct 714 CAATAAAGACAACAATGCTAAGAATGAAGATCATGGGACAG-CTGAAGAATCTG-T--GA 769
Query 770 GGGCATCAGAGGTTGGTAAATACGCCACATGGAGAAATCTTGTTACTTGGTCGATAACTC 829
|||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 770 GGGCATCAGAGGATGGTAAAGACGCCACGTGGAGAAATCTTGTTACTTGGTCGATAACTC 829
Query 830 AACAACCGG-A--AGAGATTAATATCGACGAAAATGTCAACGGAGAAG-A-A-GAAGAAA 883
|| |||| | | |||||||||||| ||| |||||||||||||||||| | | |||||||
Sbjct 830 AAGAACCTGCAGGAGAGATTAATATTGACCAAAATGTCAACGGAGAAGGACAAGAAGAAA 889
Query 884 CGAGGGACAACCGGACTTTAAATCTCTTTCCGGTTAGGGAGTACCAAGAGAAAACAGGCC 943
||||||| | || |||||| |||||||||||||||||||| |||| ||| |||||||||
Sbjct 890 CGAGGGAGATTCGAACTTTAGATCTCTTTCCGGTTAGGGAGAACCACGAGGAAACAGGCC 949
Query 944 GGTTGATAGAGAAGACGAAAGCA--T---G-------CAACTACTGTTACTACTACGAGT 991
|||| | |||||||||||||||| | | ||||||||| |||||||||||||
Sbjct 950 GGTTTACAGAGAAGACGAAAGCAAATCAAGTGTTTTGCAACTACTGCTACTACTACGAGT 1009
Query 992 TCATGCCTCTGAAGAACTGAAACAAAAAACCCATGTGTGAATAATAAATAGGAC------ 1045
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1010 TCATGCCTCTGAAGAACTGAAACAAAAA-CCCATGTGTGAGTAATAAATAGGACAAAGGG 1068
Query 1046 -TTTAATGAAGGTTTTATTTGTTGTTTTGTCCACGAA-TGGTAAGTGATGTGTTCTTA-T 1102
|||||||||||||||| ||||| ||||||||| ||| |||||||||||||||||||| |
Sbjct 1069 ATTTAATGAAGGTTTTACTTGTTCTTTTGTCCA-GAAATGGTAAGTGATGTGTTCTTACT 1127
Query 1103 A---A--TAGAAGAGAAGCGTTTGAAGATGGAGACGTGTAGTAAATGTTATATAGGAGCG 1157
| ||||||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 1128 TCTTAGGTAGAAGAGATGAGTTTGAAGATGGAGACGTGTAGTAAATGTTA----GGAGCG 1183
Query 1158 TTTGAAGATTATTAT-TGTTAGTTATTACCCAAATGAGAAGGTGGACCATGTTGGGGCTT 1216
|||||| || |||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1184 TTTGAATTTT-TTATATAATAGTTATTACCCAAATGTGAAGGTGGACCATGTTGGGGCTT 1242
Query 1217 GGGTTTGGAGTTGCAACTATCTA-TACATATGTCTGAAAGTGAAACTGAAAGCTTCGATG 1275
|||||||||| |||||| ||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 1243 GGGTTTGGAGCTGCAACCATCTAATACATGTGTCTGAAAGTTAAACTGAAAGCTTCGATG 1302
Query 1276 GTTCCTTGTCAATGTAAGGAATATATATTAA 1306
|||||||||||||||||||||||||||||||
Sbjct 1303 GTTCCTTGTCAATGTAAGGAATATATATTAA 1333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49559792100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5