BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G01500.1 Length=1325 Score E Sequences producing significant alignments: (Bits) Value Ahg484068 jgi|Araly1|484068|fgenesh2_kg.5__60__AT2G01500.1 1705 0.0 > Ahg484068 jgi|Araly1|484068|fgenesh2_kg.5__60__AT2G01500.1 Length=1333 Score = 1705 bits (923), Expect = 0.0 Identities = 1219/1351 (90%), Gaps = 63/1351 (5%) Strand=Plus/Plus Query 1 AGCCTTTTCATCTCTCTTGCATCACAAGTAAACCTCTCATCATTCATTTCCACACAGCAC 60 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 AGCCTTTTCATCTCTCTTGCATCACAAGTAAACCTCTCATCATTCATTCCCACACAGCAC 60 Query 61 TGAAACTCGAGCATTTGCTCTCTCGAATCCCATTTCCCTAGCTAAAAGGTTCGGAATT-C 119 |||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||| | Sbjct 61 TGAAACTCAAGCATTTTCTCTCTCAAATCCCATTTCCCTAGCTAAAAGGTTCAAAATTCC 120 Query 120 -C----ACAACAACAACAAAAGACCTATTTTGTGAATCTTTTCTCTAAATTAAGAGTTAT 174 | ||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 121 ACAATAACAACAACAACAAAAGACCTATTTTGTGAATCTTTTCTCTAAATTAAAAGTGAT 180 Query 175 TAGGGCAAATTTCTACATAGCATGGGCTACATCTCCAACAACAACCTCATCAACTATTTG 234 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TAGGGCAAACTTCTACATAGCATGGGCTACATCTCCAACAACAACCTCATCAACTATTTG 240 Query 235 CCCCTCTCTACTACTCAACCTCCTCTTCTTCTCAC-C-C-ACTGTGATATTAACGGCAAT 291 ||||||||||||||||||||||||||||||||| | | | |||||||||||||||||||| Sbjct 241 CCCCTCTCTACTACTCAACCTCCTCTTCTTCTCCCACACTACTGTGATATTAACGGCAAT 300 Query 292 GATCACCATCAGCTCATAACCGCATCATCAGGAGAACACGATATTGATGAACGGAAAAAC 351 ||||||||||||||||| || |||||||||||||||| |||| ||||| |||||||| Sbjct 301 GATCACCATCAGCTCATCACTGCATCATCAGGAGAACTCGAT---GATGATCGGAAAAAT 357 Query 352 AACATTCCTGCGGCGGCGACTTTGAGATGGAATCCGACGCCAGAGCAGATCACGACGCTA 411 |||||||||||| ||||||||| |||||||||||||| || ||||||||||||| |||| Sbjct 358 AACATTCCTGCGACGGCGACTTCAAGATGGAATCCGACACCCGAGCAGATCACGATGCTA 417 Query 412 GAAGAGCTTTACA-GAAGCGGAACACGGACGCCGACGACGGAACAGATCCAACAGATAGC 470 ||||||||||||| || ||||||||||||| |||||||||||||| |||||||||||||| Sbjct 418 GAAGAGCTTTACATGA-GCGGAACACGGACACCGACGACGGAACATATCCAACAGATAGC 476 Query 471 ATCTAAGCTTCGTAAATATGGGAGAATCGAAGGGAAGAACGTTTTCTATTGGTTTCAGAA 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 ATCTAAGCTTCGTAAATATGGGAGAATCGAAGGGAAGAACGTTTTCTATTGGTTTCAGAA 536 Query 531 TCATAAGGCTAGAGAGAGACTAAAACGCCGCCGTCGTGAAGGTGGTGCTATTATCAAACC 590 |||||||||||| |||||||||||||| |||||| ||||||| |||||| ||| |||||| Sbjct 537 TCATAAGGCTAGGGAGAGACTAAAACGACGCCGTTGTGAAGGAGGTGCTCTTAACAAACC 596 Query 591 ACATAAAGACGTCAAGGATTCATCATCAGGTGGTCATCGAGTTGATCAGACAAAGCTCTG 650 ||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 597 ACATAAAGATGTCAAGGATTCATCATCAGGTGGTTATCGAGTTGATCAGACAAAGAGCTG 656 Query 651 CCCATCTTTTCCACACACAAACCGACCACAGCCACAGCATGAATTAGATCCTGCGAGTTA 710 ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 657 CCCATCTCTTCCACACACAAACC--C-ACAGCCACAGCATGAATTAGATCCTGCGAGTAA 713 Query 711 CAATAAAGACAACAATGCTAATAATGAAGATCATGGGAC-GACTGAAGAATCTGATCAGA 769 ||||||||||||||||||||| ||||||||||||||||| | |||||||||||| | || Sbjct 714 CAATAAAGACAACAATGCTAAGAATGAAGATCATGGGACAG-CTGAAGAATCTG-T--GA 769 Query 770 GGGCATCAGAGGTTGGTAAATACGCCACATGGAGAAATCTTGTTACTTGGTCGATAACTC 829 |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 770 GGGCATCAGAGGATGGTAAAGACGCCACGTGGAGAAATCTTGTTACTTGGTCGATAACTC 829 Query 830 AACAACCGG-A--AGAGATTAATATCGACGAAAATGTCAACGGAGAAG-A-A-GAAGAAA 883 || |||| | | |||||||||||| ||| |||||||||||||||||| | | ||||||| Sbjct 830 AAGAACCTGCAGGAGAGATTAATATTGACCAAAATGTCAACGGAGAAGGACAAGAAGAAA 889 Query 884 CGAGGGACAACCGGACTTTAAATCTCTTTCCGGTTAGGGAGTACCAAGAGAAAACAGGCC 943 ||||||| | || |||||| |||||||||||||||||||| |||| ||| ||||||||| Sbjct 890 CGAGGGAGATTCGAACTTTAGATCTCTTTCCGGTTAGGGAGAACCACGAGGAAACAGGCC 949 Query 944 GGTTGATAGAGAAGACGAAAGCA--T---G-------CAACTACTGTTACTACTACGAGT 991 |||| | |||||||||||||||| | | ||||||||| ||||||||||||| Sbjct 950 GGTTTACAGAGAAGACGAAAGCAAATCAAGTGTTTTGCAACTACTGCTACTACTACGAGT 1009 Query 992 TCATGCCTCTGAAGAACTGAAACAAAAAACCCATGTGTGAATAATAAATAGGAC------ 1045 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1010 TCATGCCTCTGAAGAACTGAAACAAAAA-CCCATGTGTGAGTAATAAATAGGACAAAGGG 1068 Query 1046 -TTTAATGAAGGTTTTATTTGTTGTTTTGTCCACGAA-TGGTAAGTGATGTGTTCTTA-T 1102 |||||||||||||||| ||||| ||||||||| ||| |||||||||||||||||||| | Sbjct 1069 ATTTAATGAAGGTTTTACTTGTTCTTTTGTCCA-GAAATGGTAAGTGATGTGTTCTTACT 1127 Query 1103 A---A--TAGAAGAGAAGCGTTTGAAGATGGAGACGTGTAGTAAATGTTATATAGGAGCG 1157 | ||||||||| | ||||||||||||||||||||||||||||||| |||||| Sbjct 1128 TCTTAGGTAGAAGAGATGAGTTTGAAGATGGAGACGTGTAGTAAATGTTA----GGAGCG 1183 Query 1158 TTTGAAGATTATTAT-TGTTAGTTATTACCCAAATGAGAAGGTGGACCATGTTGGGGCTT 1216 |||||| || |||| | ||||||||||||||||| ||||||||||||||||||||||| Sbjct 1184 TTTGAATTTT-TTATATAATAGTTATTACCCAAATGTGAAGGTGGACCATGTTGGGGCTT 1242 Query 1217 GGGTTTGGAGTTGCAACTATCTA-TACATATGTCTGAAAGTGAAACTGAAAGCTTCGATG 1275 |||||||||| |||||| ||||| ||||| ||||||||||| |||||||||||||||||| Sbjct 1243 GGGTTTGGAGCTGCAACCATCTAATACATGTGTCTGAAAGTTAAACTGAAAGCTTCGATG 1302 Query 1276 GTTCCTTGTCAATGTAAGGAATATATATTAA 1306 ||||||||||||||||||||||||||||||| Sbjct 1303 GTTCCTTGTCAATGTAAGGAATATATATTAA 1333 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49559792100 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5