BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01505.1
Length=493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935858 jgi|Araly1|935858|scaffold_500049.1 353 5e-97
> Ahg935858 jgi|Araly1|935858|scaffold_500049.1
Length=356
Score = 353 bits (191), Expect = 5e-97
Identities = 246/270 (91%), Gaps = 13/270 (5%)
Strand=Plus/Plus
Query 65 CCGCTGTGTTCTTCTGTGGAATCTTTG-TTTTTGCTCAGTTTGGTATTTCTTCATCAGCT 123
|||| ||||||||||| |||||| ||| | ||||||||||||||| ||||||||||||||
Sbjct 98 CCGCCGTGTTCTTCTGGGGAATC-TTGATCTTTGCTCAGTTTGGTTTTTCTTCATCAGCT 156
Query 124 CTTTTTGCTCCTGATCACTATCCTTCACTACCGAGAAAGGCTGGTCATTTCCACGAAATG 183
||||||| | | || ||||||||| |||||||||||||||| |||||| ||||||
Sbjct 157 CTTTTTG---C--A--AC--TCCTTCACTTCCGAGAAAGGCTGGTCCTTTCCATGAAATG 207
Query 184 GCGTCGTTTCAAGCTCCGAAAG-CTACAGTGTCGTTCACGGGTCAACGTCGAGAAGAAGA 242
||||||||||||||||| |||| || || |||| ||||||||||||||||||||||||||
Sbjct 208 GCGTCGTTTCAAGCTCCCAAAGCCT-CAATGTCATTCACGGGTCAACGTCGAGAAGAAGA 266
Query 243 AAACAGAGATGAAGTTTATAAAGACGACAAGAGATTAGTTCACACAGGTCCAAATCCTCT 302
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 AAACAGAGATGACGTTTATAAAGACGACAAGAGATTAGTTCACACAGGTCCAAATCCTCT 326
Query 303 TCACAACTGAAACACTAATTAGCAACACGT 332
||||||||||||||||||||||||||||||
Sbjct 327 TCACAACTGAAACACTAATTAGCAACACGT 356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17894971241
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5