BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01510.1
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346647 jgi|Araly1|346647|fgenesh1_pg.C_scaffold_5000039 2724 0.0
> Ahg346647 jgi|Araly1|346647|fgenesh1_pg.C_scaffold_5000039
Length=1794
Score = 2724 bits (1475), Expect = 0.0
Identities = 1648/1732 (95%), Gaps = 10/1732 (1%)
Strand=Plus/Plus
Query 1 ATGCTTGCGAAACAAACGCCATTAACAAAACAAATGCTCTCCGAGCTCTTACGAGCAAGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCTTGCGAAACAAACGCCATTAACAAAACAAATGCTCTCCGAGCTCTTACGAGCAAGT 60
Query 61 TCTTCAAAGCCGAAGCAGCTTAAGAAGATCCATGCGATTGTACTAAGGACAGGTTTCTCT 120
|||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||
Sbjct 61 TCTTCAAAGCCGAAGCAGCTTAAGAAGATCCACGCGGTTGTAATAAGGACAGGTTTCTCT 120
Query 121 GAAAAGAACAGTCTTTTAACTCAGCTGTTAGAGAATCTTGTAGTTATTGGTGACATGTGT 180
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 121 GAAAAGAACAGTCTTTTAACTCAGTTGTTAGAGAATCTTGTAGTTGTTGGTGACATGTGT 180
Query 181 TACGCACGCCAGGTGTTCGACGAAATGCACAAGCCGAGGATCTTCCTTTGGAACACTCTT 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 TACGCACGCCAGGTGTTCGACGAAATGCCCAAGCCGAGGATCTTCCTTTGGAACACTCTT 240
Query 241 TTCAAAGGGTACGTTAGAAACCAGCTCCCTTTTGAAAGTCTCCTACTTTATAAGAAAATG 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 TTCAAAGGGTACGTTAGAAACCAGCTCCCTTTTGAAAGTGTCCTACTTTATAAGAAAATG 300
Query 301 CGTGATCTTGGTGTCCGTCCTGATGAATTTACTTACCCGTTTGTGGTGAAAGCGATCTCT 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CGTGATCTTGGTGTCCGTCCTGATGAATTTACTTACCCGTTTGTGGTGAAGGCGATCTCT 360
Query 361 CAGCTTGGGGATTTT-TCCTGT-GGGTTTGCTCTTCATGCCCATGTGGTGAAATATGGTT 418
|||||||||| |||| ||||| |||||| | ||||||||||||||| ||||| ||||||
Sbjct 361 CAGCTTGGGG-TTTTGCCCTGTGGGGTTT-CCCTTCATGCCCATGTGTTGAAAAATGGTT 418
Query 419 TTGGGTGTCTTGGGATTGTTGCAACTGAGTTGGTAATGATGTACATGAAGTTTGGTGAAT 478
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 TTGAGTGTCTTGGGATTGTTGCAACTGAGTTGGTGATGATGTACATGAAGTTTGGTGAAT 478
Query 479 TGAGTTCGGCTGAGTTTTTGTTTGAGTCAATGCAAGTCAAAGATTTAGTGGCTTGGAATG 538
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 479 TGAGTTCGGCTGAGTTCTTGTTTGAGTCAATGCAAGTCAAGGATTTAGTGGCTTGGAATG 538
Query 539 CGTTTCTTGCGGTTTGTGTTCAAACGGGGAACTCCGCTATAGCTCTTGAGTATTTCAACA 598
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 CGTTTATTGCGGTTTGTGTTCAAACCGGGAACTCCGCTATAGCTCTTGAGTATTTCAACA 598
Query 599 AAATGTGCGCGGATGCAGTTCAGTTTGATTCGTTTACTGTCGTGAGTATGCTTTCTGCTT 658
| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 599 AGATGTGTGCGGATGCAGTTCAGTTTGATTCTTTTACTGTTGTGAGTATGCTTTCTGCTT 658
Query 659 GTGGTCAGCTAGGCTCTTTGGAGATTGGAGAAGAAATTTATGATCGTGCGAGGAAAGAAG 718
|||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 659 GTGGTCAGCTGGGCTCTTTGGATATCGGAGAAGAAATTTATGATCGCGCGAGGAAAGAAG 718
Query 719 AGATTGATTGTAACATAATAGTCGAAAATGCAAGGCTTGATATGCACTTAAAGTGTGGTA 778
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 719 AGATTGAATGTAACATAATAGTCGAAAATGCAAGGCTTGATATGCACTTGAAGTGTGGTA 778
Query 779 ACACTGAAGCTGCCAGGGTATTATTCGAGGAAATGAAACAGAGGAATGTGGTTTCATGGA 838
||| ||||||||||||||||||||||| || |||||||| ||||| |||||||||||||
Sbjct 779 GCACCGAAGCTGCCAGGGTATTATTCGACGACATGAAACAAAGGAACGTGGTTTCATGGA 838
Query 839 GCACAATGATTGTAGGATATGCAATGAATGGAGATAGCAGAGAAGCTTTGACATTGTTCA 898
|||| |||||||||||||||||||||||||| |||||| ||||||| ||| |||||||||
Sbjct 839 GCACGATGATTGTAGGATATGCAATGAATGGCGATAGCGGAGAAGCCTTGGCATTGTTCA 898
Query 899 CTACGATGCAGAATGAGGGACTTAGACCTAACTACGTGACATTTCTCGGGGTATTATCTG 958
||| ||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 899 CTATGATGCAGAACGAGGGACTAAGACCGAACTACGTGACATTTCTCGGGGTGTTATCTG 958
Query 959 CTTGTAGCCACGCTGGACTAGTGAATGAAGGAAAAAGGTATTTCAGTCTCATGGTTCAG- 1017
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 959 CTTGTAGCCATGCTGGACTAGTGAATGAAGGAAAAAGGTATTTCAGTCTCATGGTTC-GA 1017
Query 1018 TCGAATGATAAGAATCTGGAGCCTAGAAAAGAGCATTATGCATGTATGGTTGATCTATTG 1077
| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1018 TTGAATGATAAGAATCTTGAGCCAAGAAAAGAGCATTATGCATGTATGGTTGATCTATTG 1077
Query 1078 GGACGCTCTGGTCTTCTAGAGGAGGCTTATGAATTTATCAAAAAGATGCCAGTGGAACCA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GGACGCTCTGGTCTTCTAGAGGAGGCTTATGAATTTATCAAAAAGATGCCAGTGGAACCA 1137
Query 1138 GATACCGGTATCTGGGGAGCTTTGTTGGGTGCTTGTGCAGTTCATCGTGATATGATATTA 1197
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1138 GATACCGGTATCTGGGGAGCTTTGTTGGGCGCTTGTGCAGTTCATCGTGATATGATATTG 1197
Query 1198 GGGCAGAAAGTGGCAGACGTTCTTGTTGAAACAGCTCCTGATATTGGTTCATACCACGTA 1257
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1198 GGGCAGAAAGTGGCCGACGTTCTTGTAGAAACAGCTCCTGATATTGGTTCATACCACGTA 1257
Query 1258 CTACTGTCTAATATCTACGCAGCTGCTGGTAAATGGGATTGTGTTGACAAAGTAAGGAGT 1317
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTACTGTCTAATATCTATGCAGCTGCTGGTAAATGGGATTGTGTTGACAAAGTAAGGAGT 1317
Query 1318 AAAATGAGGAAGCTGGGCACTAAAAAGGTTGCAGCCTATAGTTCTGTTGAATTCGAGGGC 1377
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||
Sbjct 1318 AAAATGAGGAAGCTGGGCACTAAAAAGGTTGCTGCCTATAGTTCCGTTGAATTTGACGGC 1377
Query 1378 AAAATCCATTTTTTCAATAGAGGAGACAAATCACATCCGCAATCAAAGGCGATATATGAG 1437
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct 1378 AAAATCCATTTTTTCAATAGAGGAGACATATCACATCCGCAATCAATGGTGATATATGAG 1437
Query 1438 AAATTGGATGAAATCTTGAAGAAGATAAGGAAA-ATGGGGTATGTTCCAGATACGTGTTC 1496
||||||||||||||||||||||||||||| ||| ||||| |||||||| |||||| ||||
Sbjct 1438 AAATTGGATGAAATCTTGAAGAAGATAAG-AAACATGGGCTATGTTCCCGATACGGGTTC 1496
Query 1497 AGTATTTCATGATGTGGAAATGGAGGAAAAAGAATGTTCTCTGAGTCATCACAGTGAGAA 1556
|||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||
Sbjct 1497 AGTATTTCATGATGTGGAAATGGAGGAAAAGGAATCTTCTCTTAGTCATCACAGTGAGAA 1556
Query 1557 GCTCGCTATTGCATTTGGACTCATTAAAGGGAGACCGGGACATCCTATACGGGTTATGAA 1616
||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 1557 GCTCGCTATTGCATTTGGACTCATTAATGGGAGAGCAGGACATCCTATACGGGTTATGAA 1616
Query 1617 GAACTTGAGAACCTGTGATGATTGCCACGCTTTCTCCAAGTTTGTTTCCAGTCTTACTTC 1676
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 1617 GAACTTGAGAACCTGTGATGATTGCCACGTTTTCTCCAAGTTTGTTTCCAGGCTTACATC 1676
Query 1677 GAC-AGAAATCATCATGCGAGACAAGAACAGGTTTCACCACTTCAGGAATGG 1727
|| ||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1677 -ACGAGAGATCATCATGAGAGACAAGAACAGGTTTCACCACTTCAGGAATGG 1727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65858033605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5