BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01520.1
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935860 jgi|Araly1|935860|scaffold_500051.1 822 0.0
Ahg322644 jgi|Araly1|322644|fgenesh1_pm.C_scaffold_5000188 763 0.0
Ahg493506 jgi|Araly1|493506|fgenesh2_kg.7__2939__AT4G14060.1 675 0.0
Ahg945743 jgi|Araly1|945743|scaffold_701972.1 233 1e-60
> Ahg935860 jgi|Araly1|935860|scaffold_500051.1
Length=499
Score = 822 bits (445), Expect = 0.0
Identities = 472/485 (97%), Gaps = 2/485 (0%)
Strand=Plus/Plus
Query 62 AGAGAGATGGCGACGTCAGGAACATATGTGACGGAGGTTCCATTGAAAGGATCGGCTGAG 121
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 17 AGAGAGATGGCGACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCGGCGGAG 76
Query 122 AAACACTACAAGCGGTGGAGGAGTGAGAACCACCTCTTCCCCGACGCCATCGGCCACCAC 181
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 77 AAACACTACAAGCGGTGGAGGAGTGAGAACCACCTCTTCCCCGATGCCGTCGGCCACCAC 136
Query 182 ATCCAAGGTGTCACCATCCACGACGGTGAATGGGACTCCCATGGAGCCATCAAGATTTGG 241
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 137 ATCCAAGGTGTCACCATCCACGACGGCGAATGGGACTCCCATGGAGCCATCAAGATTTGG 196
Query 242 AACTACACATGCGATGGGAAACCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAG 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 197 AACTACACATGCGATGGGAAACCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGACGAG 256
Query 302 AATATGGCGGTAACGTTCAGAGGACTCGAAGGTCACGTGATGGAGCAGCTTAAAGTGTAT 361
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 257 AATATGGCGGTAACATTCAGAGGACTAGAAGGTCACGTGATGGAGCAGCTTAAAGTGTAT 316
Query 362 GACGTCATCTTTCAGTTCATTCAAAAGTCACCTGATGATATCATCTGTAAGATCACTATG 421
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 317 GACGTCATCTTTCAGTTCATTCAAAAGTCCCCTGATGATATCATCTGTAAGATCACTATG 376
Query 422 ATCTGGGAGAAGCAAAACGATGACATGCCTGAGCCCAGCAACTACATGAAGTTCGTCAAG 481
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 377 ATCTGGGAGAAGCAAAACGATGACATGCCTGAGCCTAGCAACTACATGAAGTTCGTCAAG 436
Query 482 AGCCTCGCTGCTGACATGGATGATCACGTTCTCAAAGCCTAAATATCCCTTTCACATCAA 541
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 437 AGCCTCGCTGCTGACATGGATGATCACGTTCTCAAAGCCTAAATC-CCCTT-CACATCAA 494
Query 542 CCCAT 546
|||||
Sbjct 495 CCCAT 499
> Ahg322644 jgi|Araly1|322644|fgenesh1_pm.C_scaffold_5000188
Length=456
Score = 763 bits (413), Expect = 0.0
Identities = 441/455 (97%), Gaps = 0/455 (0%)
Strand=Plus/Plus
Query 68 ATGGCGACGTCAGGAACATATGTGACGGAGGTTCCATTGAAAGGATCGGCTGAGAAACAC 127
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1 ATGGCGACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCCGCGGAGAAACAC 60
Query 128 TACAAGCGGTGGAGGAGTGAGAACCACCTCTTCCCCGACGCCATCGGCCACCACATCCAA 187
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TACAAGCGTTGGAGGAGTGAGAACCACCTCTTCCCCGACGCCATCGGCCACCACATCCAG 120
Query 188 GGTGTCACCATCCACGACGGTGAATGGGACTCCCATGGAGCCATCAAGATTTGGAACTAC 247
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GGTGTTACCATCCACGACGGCGAATGGGACTCTCATGGAGCCATCAAGATTTGGAACTAC 180
Query 248 ACATGCGATGGGAAACCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAGAATATG 307
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACATGCGATGGGAAAGCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAGAATATG 240
Query 308 GCGGTAACGTTCAGAGGACTCGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGACGTC 367
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCGGTAACGTTCAGAGGACTGGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGACGTC 300
Query 368 ATCTTTCAGTTCATTCAAAAGTCACCTGATGATATCATCTGTAAGATCACTATGATCTGG 427
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 301 ATCTTTCAGTTCATTCAAAAGTCCCCTGATGATATCATCTGTAAGATCACTATGATTTGG 360
Query 428 GAGAAGCAAAACGATGACATGCCTGAGCCCAGCAACTACATGAAGTTCGTCAAGAGCCTC 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGAAGCAAAACGATGACATGCCTGAGCCCAGCAACTACATGAAGTTCGTCAAGAGCCTC 420
Query 488 GCTGCTGACATGGATGATCACGTTCTCAAAGCCTA 522
|| ||||||||||| ||||||||||||||||||||
Sbjct 421 GCCGCTGACATGGACGATCACGTTCTCAAAGCCTA 455
> Ahg493506 jgi|Araly1|493506|fgenesh2_kg.7__2939__AT4G14060.1
Length=647
Score = 675 bits (365), Expect = 0.0
Identities = 450/491 (92%), Gaps = 6/491 (1%)
Strand=Plus/Plus
Query 65 GAGATGGCGACGTCAGGAACATATGTGACGGAGGTTCCATTGAAAGGATCGGCTGAGAAA 124
||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 59 GAGATGGCGACTTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCAGCGGAGAAA 118
Query 125 CACTACAAGCGGTGGAGGAGTGAGAACCACCTCTTCCCCGACGCCATCGGCCACCACATC 184
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 119 CACTACAAGCGGTGGAGGAATGAGAACCACCTCTTCCCCGACGCCATCGGTCACCACATC 178
Query 185 CAAGGTGTCACCATCCACGACGGTGAATGGGACTCCCATGGAGCCATCAAGATTTGGAAC 244
||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 179 CAAGGTGTCGCCGTCCACGACGGCGAATGGGACTCCCATGGAGCCATCAAGATTTGGAAC 238
Query 245 TACACATGCGATGGGAAACCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAGAAT 304
||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 239 TACACATTAGATGGGAAACCGGAGGTGTTCAAGGAGAGGAGGGAGATAGATGATGAGAAT 298
Query 305 ATGGCGGTAACGTTCAGAGGACTCGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGAC 364
|||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 299 ATGGCGGTGACGTTCAGAGGACTAGAAGGTCACGTAATGGAGCAGCTTAAAGTGTATGAT 358
Query 365 GTCATCTTTCAGTTCATTCAAAAGTCACCTGATGATATCATCTGTAAGATCACTATGATC 424
|||||| ||||||||||||||||| |||| ||||||| |||| ||||||||||||| |
Sbjct 359 ACCATCTTACAGTTCATTCAAAAGTCGCCTGGTGATATCGTCTGCAAGATCACTATGACC 418
Query 425 TGGGAGAAGCAAAACG-ATGACAT-GCCTGAGCCCAGCAACTACATGAAGTTCGTCAAGA 482
|||||||||| || || ||||| | ||||||||||||||||||||||||||| |||||||
Sbjct 419 TGGGAGAAGCGAA-CGGATGAC-TCGCCTGAGCCCAGCAACTACATGAAGTTGGTCAAGA 476
Query 483 GCCTCGCTGCTGACATGGATGATCACGTTCTCAAAGCCTAAATATCCCT-T-TCACATCA 540
||||||||||||||||||| | ||||||||||||||||||| | ||| | |||| | |
Sbjct 477 GCCTCGCTGCTGACATGGACGCCCACGTTCTCAAAGCCTAAAAACCCCCCTCTCACGTAA 536
Query 541 ACCCATCATCA 551
|||||||||||
Sbjct 537 ACCCATCATCA 547
> Ahg945743 jgi|Araly1|945743|scaffold_701972.1
Length=499
Score = 233 bits (126), Expect = 1e-60
Identities = 327/423 (77%), Gaps = 18/423 (4%)
Strand=Plus/Plus
Query 68 ATGGCGACGTCAGGAACATATGTGACGGAGGTTCCATTGAAAGGATCGGCTGAGAAACAC 127
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 24 ATGGCGACGTCGGGAACATACGTGACGGAGGTTCCATTGAAAGGATCGGCGGAGAAACAC 83
Query 128 TACAAGCGGTGGAGGAGTGAGAACCACCTCTTCCCCGACGCCATCGGCCACCACATCCA- 186
|||||| | |||| || |||||||| ||||||| ||| |||||||||| ||||||||
Sbjct 84 TACAAGAGCTGGAAAAGCGAGAACCATGTCTTCCCTGACACCATCGGCCAACACATCCAT 143
Query 187 AGGTGTCACCATCCACGACGGTGAATGGGACTCCCATGGAGCC-ATCAAGATTTGGAACT 245
| ||| | ||||| || ||| ||| | || || | | |||| || |||| |||
Sbjct 144 AAC-GTCGTTGTTCACGAAGGCGAACATGACGCTCACGG-GTCTATCAGGAGTTGGGACT 201
Query 246 ACACATGCGATGGGAA-ACCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAGAAT 304
|||||| ||||| || | |||| |||||| |||| |||||||||||| || ||||||
Sbjct 202 ACACATATGATGGAAAGAA-GGAGACGTTCAAAGAGAAGAGAGAGATAGATGACGAGAAT 260
Query 305 ATGGCGGTAACGTTCAGAGGACTCGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGAC 364
| | | ||| |||||||| || |||||| ||||||||| || ||||||| |||
Sbjct 261 AAAACATTGACGAAAAGAGGACTGGAGGGTCACCCGATGGAGCACCTCAAAGTGTTTGAT 320
Query 365 GTCATCTTTC-AGTTCATTCA-AAAGTCACCTGATGATA--T-CATCTGTAAGA-TCACT 418
||||| || | | || |||| ||| || ||| |||| | | |||| || | |||||
Sbjct 321 GTCAT-TTACCAATTTATTCCCAAA-TC---TGAGGATAGCTGCGTCTGCAA-ACTCACT 374
Query 419 ATGATCTGGGAGAAGCAAAACGATGACATGCCTGAGCCCAGCAACTACATGAAGTTCGTC 478
||| | |||||||||| ||||||||| | || || || ||| ||||||||| ||||||
Sbjct 375 ATGCTATGGGAGAAGCGCAACGATGACTTTCCCGAACCAAGCGGCTACATGAAATTCGTC 434
Query 479 AAG 481
|||
Sbjct 435 AAG 437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29125908588
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5