BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G01554.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value Ahg322499 jgi|Araly1|322499|fgenesh1_pm.C_scaffold_5000043 254 4e-67 Ahg935868 jgi|Araly1|935868|scaffold_500059.1 182 2e-45 > Ahg322499 jgi|Araly1|322499|fgenesh1_pm.C_scaffold_5000043 Length=414 Score = 254 bits (137), Expect = 4e-67 Identities = 216/251 (86%), Gaps = 18/251 (7%) Strand=Plus/Plus Query 80 GAAGTGCTGGCTTCCACTTCTCGGATCAGATTCCAGCTTTTTCCGACTTTATTGCCCTTA 139 |||| || |||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 166 GAAG-GCAGGCTTCCACTTCTCGGATCAGATTCCAGCTTTTTCCTACTTTATTGTCCTTA 224 Query 140 CTGTG-C-CT----C--T-GA---A--GGGGAAAATCGGTTCAACGGGATCAAGGAACTT 185 || || | || | | || | |||||||||||| ||||| |||||||||||||| Sbjct 225 CTCTGCCTCTGAAGCATTCGATCCATGGGGGAAAATCGGGTCAACCGGATCAAGGAACTT 284 Query 186 TGTGTTGTCTAACAAGTTAGAGACTCAAAACCTTGAAGACTCTATGATGACAACAACAAC 245 |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 285 TGTGTTGTCTAAGAAGTTAGAGACTCAAAAAATTGAAGACTCTGTGATGACAACAACAAT 344 Query 246 AACCCGGAAGACTTCAGGGAGATGGAAGGCTTGGCTCAACAAGTCTTTTGGCCTTATGGT 305 || ||||||| || |||||||||||||||||||||||||||||| |||||| |||| | Sbjct 345 --CC-GGAAGACCTCTGGGAGATGGAAGGCTTGGCTCAACAAGTCTCTTGGCCGTATGAT 401 Query 306 TCCTTCTCATT 316 | ||||||||| Sbjct 402 TTCTTCTCATT 412 > Ahg935868 jgi|Araly1|935868|scaffold_500059.1 Length=446 Score = 182 bits (98), Expect = 2e-45 Identities = 206/253 (81%), Gaps = 27/253 (11%) Strand=Plus/Plus Query 80 GAAGTGCTGGCTTCCACTTCTCGGATCAGATTCCAGCTTTTTCCGACTTTATTGCCCTTA 139 |||| || |||||||||||||||||||||||||||||||||||| |||||| ||||| || Sbjct 186 GAAG-GCAGGCTTCCACTTCTCGGATCAGATTCCAGCTTTTTCCTACTTTACTGCCCGTA 244 Query 140 CTGTGCCTCT---G-A----A-----GGGGAAA-ATCGGTTCAACGGGATCAAGGAACTT 185 || ||||||| | | | |||| || ||||| ||||| |||||||||||||| Sbjct 245 CTATGCCTCTCAAGCATTCGATCCATGGGGTAATATCGGGTCAACCGGATCAAGGAACTT 304 Query 186 TGTGTTGTCTAACAAGTTAGAGACTCAAAACCTTGAAGACTCTATGATGACAACAACAAC 245 ||| |||||||| || ||||||||||||||||||||||||||| |||||||||||||| | Sbjct 305 TGTTTTGTCTAAGAAATTAGAGACTCAAAACCTTGAAGACTCTGTGATGACAACAACAGC 364 Query 246 AACCCGGAAGACTTCAGGGAGATGGAAGGCTTGGCTCAACAAGTCTTTTGGCCTTATGGT 305 || | ||| | || | | | || || |||||||||||||| | ||||||||||| Sbjct 365 AATCTGGAGG--TT--G--A-A-GGC---CT-GGCTCAACAAGTCTCTCGGCCTTATGGT 412 Query 306 TCCTTCTCATTAA 318 |||||| |||||| Sbjct 413 TCCTTCCCATTAA 425 Score = 104 bits (56), Expect = 4e-22 Identities = 79/90 (88%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 1 ATGTTGTACAACAACAAGCATCAGAGAAACCAGAAATC-GAAGACTACCAACAGGTTCCT 59 ||||||| |||||||||| |||||||||||||| | |||||||| || ||||| || Sbjct 21 ATGTTGTTGTACAACAAGCAAAAGAGAAACCAGAAA-CTAAAGACTACAAAGAGGTTTCT 79 Query 60 TGTTAGCATCAATGTCTTAGGAAGTGCTGG 89 |||||||||||||||||||||||||||||| Sbjct 80 TGTTAGCATCAATGTCTTAGGAAGTGCTGG 109 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11217743166 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5