BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G01554.1

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg322499 jgi|Araly1|322499|fgenesh1_pm.C_scaffold_5000043           254    4e-67
  Ahg935868 jgi|Araly1|935868|scaffold_500059.1                        182    2e-45


> Ahg322499 jgi|Araly1|322499|fgenesh1_pm.C_scaffold_5000043
Length=414

 Score =  254 bits (137),  Expect = 4e-67
 Identities = 216/251 (86%), Gaps = 18/251 (7%)
 Strand=Plus/Plus

Query  80   GAAGTGCTGGCTTCCACTTCTCGGATCAGATTCCAGCTTTTTCCGACTTTATTGCCCTTA  139
            |||| || |||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct  166  GAAG-GCAGGCTTCCACTTCTCGGATCAGATTCCAGCTTTTTCCTACTTTATTGTCCTTA  224

Query  140  CTGTG-C-CT----C--T-GA---A--GGGGAAAATCGGTTCAACGGGATCAAGGAACTT  185
            || || | ||    |  | ||   |  |||||||||||| ||||| ||||||||||||||
Sbjct  225  CTCTGCCTCTGAAGCATTCGATCCATGGGGGAAAATCGGGTCAACCGGATCAAGGAACTT  284

Query  186  TGTGTTGTCTAACAAGTTAGAGACTCAAAACCTTGAAGACTCTATGATGACAACAACAAC  245
            |||||||||||| |||||||||||||||||  ||||||||||| ||||||||||||||| 
Sbjct  285  TGTGTTGTCTAAGAAGTTAGAGACTCAAAAAATTGAAGACTCTGTGATGACAACAACAAT  344

Query  246  AACCCGGAAGACTTCAGGGAGATGGAAGGCTTGGCTCAACAAGTCTTTTGGCCTTATGGT  305
              || ||||||| || |||||||||||||||||||||||||||||| |||||| |||| |
Sbjct  345  --CC-GGAAGACCTCTGGGAGATGGAAGGCTTGGCTCAACAAGTCTCTTGGCCGTATGAT  401

Query  306  TCCTTCTCATT  316
            | |||||||||
Sbjct  402  TTCTTCTCATT  412


> Ahg935868 jgi|Araly1|935868|scaffold_500059.1
Length=446

 Score =  182 bits (98),  Expect = 2e-45
 Identities = 206/253 (81%), Gaps = 27/253 (11%)
 Strand=Plus/Plus

Query  80   GAAGTGCTGGCTTCCACTTCTCGGATCAGATTCCAGCTTTTTCCGACTTTATTGCCCTTA  139
            |||| || |||||||||||||||||||||||||||||||||||| |||||| ||||| ||
Sbjct  186  GAAG-GCAGGCTTCCACTTCTCGGATCAGATTCCAGCTTTTTCCTACTTTACTGCCCGTA  244

Query  140  CTGTGCCTCT---G-A----A-----GGGGAAA-ATCGGTTCAACGGGATCAAGGAACTT  185
            || |||||||   | |    |     |||| || ||||| ||||| ||||||||||||||
Sbjct  245  CTATGCCTCTCAAGCATTCGATCCATGGGGTAATATCGGGTCAACCGGATCAAGGAACTT  304

Query  186  TGTGTTGTCTAACAAGTTAGAGACTCAAAACCTTGAAGACTCTATGATGACAACAACAAC  245
            ||| |||||||| || ||||||||||||||||||||||||||| |||||||||||||| |
Sbjct  305  TGTTTTGTCTAAGAAATTAGAGACTCAAAACCTTGAAGACTCTGTGATGACAACAACAGC  364

Query  246  AACCCGGAAGACTTCAGGGAGATGGAAGGCTTGGCTCAACAAGTCTTTTGGCCTTATGGT  305
            || | ||| |  ||  |  | | ||    || |||||||||||||| | |||||||||||
Sbjct  365  AATCTGGAGG--TT--G--A-A-GGC---CT-GGCTCAACAAGTCTCTCGGCCTTATGGT  412

Query  306  TCCTTCTCATTAA  318
            |||||| ||||||
Sbjct  413  TCCTTCCCATTAA  425


 Score =  104 bits (56),  Expect = 4e-22
 Identities = 79/90 (88%), Gaps = 2/90 (2%)
 Strand=Plus/Plus

Query  1    ATGTTGTACAACAACAAGCATCAGAGAAACCAGAAATC-GAAGACTACCAACAGGTTCCT  59
            |||||||   ||||||||||  |||||||||||||| |  |||||||| || ||||| ||
Sbjct  21   ATGTTGTTGTACAACAAGCAAAAGAGAAACCAGAAA-CTAAAGACTACAAAGAGGTTTCT  79

Query  60   TGTTAGCATCAATGTCTTAGGAAGTGCTGG  89
            ||||||||||||||||||||||||||||||
Sbjct  80   TGTTAGCATCAATGTCTTAGGAAGTGCTGG  109



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11217743166


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5