BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01560.1
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322500 jgi|Araly1|322500|fgenesh1_pm.C_scaffold_5000044 298 6e-80
Ahg346655 jgi|Araly1|346655|fgenesh1_pg.C_scaffold_5000047 215 6e-55
> Ahg322500 jgi|Araly1|322500|fgenesh1_pm.C_scaffold_5000044
Length=762
Score = 298 bits (161), Expect = 6e-80
Identities = 213/236 (90%), Gaps = 12/236 (5%)
Strand=Plus/Plus
Query 637 ATTTTGAAGCAGATTTCAACTAGAATGCGACTGCTTGAGAGTATCATAGAACAAGTACAC 696
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 517 ATTTTGAAGCAGATTTCAACTAGAATACGACTGCTTGAGAGTATCATAGAACAAGTTCAC 576
Query 697 AAACTACTTAGTAATGTACTTGGACCACCTCCTTCTGCTGCTAAAGCCCTCAAGAAACAG 756
||| |||| ||||||||||||||||||||| | | | ||||| | | |||||||
Sbjct 577 AAAATACTGAGTAATGTACTTGGACCACCT-CGT-T-CTGCT---G----C--GAAACAG 624
Query 757 AGATCATGGAAACAAGTGAGAGGTGATTATGAACAAGCAGAGATGCTTCATGATCTGAAT 816
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 625 CGATCATGGAAACAAGTGAGAGGTGATTATGAACAAGCAGAGATGCTTCAGGATCTGAAT 684
Query 817 CAACAAGTCCAACAAGAAATGCCGAGAATGGACATCCCGGGGAATCAAGCTAGCGA 872
||||||||||||||||||||| ||||||||||||||||| | |||||||| |||||
Sbjct 685 CAACAAGTCCAACAAGAAATGACGAGAATGGACATCCCGCGAAATCAAGCCAGCGA 740
Score = 278 bits (150), Expect = 7e-74
Identities = 314/385 (82%), Gaps = 44/385 (11%)
Strand=Plus/Plus
Query 109 GAAGAAACTGCGAGTTTTATATTCGATACATTTGGAGTCTCAC-TAAAGTTTACCAGATT 167
||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 64 GAAGAAACTGCGAATTTTATATTCGATACATTTGGAGTCCCACATAAA-TTTACCAGATT 122
Query 168 TGTTTGGTATCTTCTTGAAAAAGCAAATCCAGATTTCTTCAGATGTTTCAAAACACATTG 227
||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||
Sbjct 123 AATTTGGTATCTTCTTGAAAAAGCAAATCCACATTTCTTCAGCTGTTTCAAAAGACATTG 182
Query 228 CGAGAATATTCAGAATGCACCAAGTGAAGAAGTAACGTC---T----AAT---G----T- 272
|||||||||| ||||||||||||||||||||||||||| | || | |
Sbjct 183 TGAGAATATTCGGAATGCACCAAGTGAAGAAGTAACGTCGCATGCTCAAACAAGACAATC 242
Query 273 A---G---AGATTGAAAATTCTTTTGAAGATTTAGCAGAGGCAAGTACAAGCTTTACAAA 326
| | ||||||||| |||||| ||||||||||||||||||||||||||||| |||||
Sbjct 243 AAATGTTGAGATTGAAACTTCTTTAGAAGATTTAGCAGAGGCAAGTACAAGCTTCACAAA 302
Query 327 ACCAGATAACAAACCTAGAGCAAAGCGTTCAAAGGG--GAAAAATAAACAGAAGCAACAT 384
| ||||||||||||||||||||||||||| ||||| |||| | ||| | ||||
Sbjct 303 ATCAGATAACAAACCTAGAGCAAAGCGTTTAAAGGCTCGAAAGGCGGA-AGA-GAAACAA 360
Query 385 CCAATTTCTCCTATTCATTCTTTGATC-GAGACTGCTCCAAATGATGCATCATCACAAGT 443
| || | | | || || | ||||||||||||||||||||||||||||||||
Sbjct 361 C-AA---C----A---A--CT--GA-CAGAGACTGCTCCAAATGATGCATCATCACAAGT 404
Query 444 GCCTCAAGAAGCAGCTACTGCTAAT 468
| |||||||| | |||||| |||||
Sbjct 405 GTCTCAAGAATCTGCTACTACTAAT 429
> Ahg346655 jgi|Araly1|346655|fgenesh1_pg.C_scaffold_5000047
Length=606
Score = 215 bits (116), Expect = 6e-55
Identities = 223/271 (82%), Gaps = 21/271 (8%)
Strand=Plus/Plus
Query 291 TGAAGATTTAGCAGAGGCAAGTACAAGCTTTACAAAACCAGATAACAAACCTAGAGCAAA 350
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 144 TGAAGATTTAGCAGAGGCAAGTACAAGCTTTACAGAACCAGATAACAAACCTAGAGCGAG 203
Query 351 GCGTTCAAAGGG--GAAAAATAAACAGAAGCAAC-ATCCAATTTCTCCTATTCATT-CTT 406
||| || |||| |||| || ||| ||||| | |||||||||||||||| || |||
Sbjct 204 GCGGTCTAAGGCTCGAAAGGCGAA-AGA-GCAACGA-CCAATTTCTCCTATTCGTTGCTT 260
Query 407 TGATCG-AGACTGCTCCAAATGATGCATCATCACAAG-T------G--CCTCAAGAAGCA 456
| || |||||| ||||||||||||||||||||||| | | ||||||||||
Sbjct 261 A-A-CGGAGACTGGTCCAAATGATGCATCATCACAAGATTCACAAGTTCCTCAAGAAGTT 318
Query 457 GCTACTGCTAATTCTAGTGATACCCCA-ATTCCTGTGGAGAAGGTTTCAAGTAAAGCAAG 515
|| ||| | ||| || ||||| ||| | ||||| ||||||||||||||||||| ||| ||
Sbjct 319 GCAACTACCAATGCTGGTGATGCCC-AGATTCCAGTGGAGAAGGTTTCAAGTAGAGCGAG 377
Query 516 GCGGTTCAGGGCTCGAAAGAAAGCGAAACAA 546
||| | || ||||||||||||||||||||||
Sbjct 378 GCGCTCCAAGGCTCGAAAGAAAGCGAAACAA 408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39190358676
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5