BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01580.1
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484074 jgi|Araly1|484074|fgenesh2_kg.5__66__AT2G01580.1 896 0.0
> Ahg484074 jgi|Araly1|484074|fgenesh2_kg.5__66__AT2G01580.1
Length=679
Score = 896 bits (485), Expect = 0.0
Identities = 555/590 (94%), Gaps = 0/590 (0%)
Strand=Plus/Plus
Query 139 ATTCATTGGTAATGGCAGATTCCGACATAGAGACGAGCAGCAACCAAAATAGCAATAGCA 198
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 90 ATTCATTGGTAATGGCAGATTCCGACATAGAGACGAGCAGCAACCACAATAGCAACAGCA 149
Query 199 ACACCAGCCATTCAACTACTTCAACCACGAGTGTTCATGTTACGGCTCTCGATGGGATTG 258
||||||||| |||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 150 ACACCAGCCGTTCAACCGCATCGACCACGAGTGTTCATGTTACGGCTCTCGATGGGATTG 209
Query 259 TAAGTGCTAATTCTCTCTTCACGGTTGCAGTCTTTGTCGGAATCTCCTTCGACCAGCCAA 318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 TAAGTGCTAATTCTCTCTTCACGGTTGCAGTCTTTGTCGGAATCTCCTTCGACCAGCCAC 269
Query 319 GTGACCTCACCCTCACGGACAGAACAGAGTGCAGTGCAGGACGAGACGTGGAACGTGACC 378
||||||||| ||||||||||||| | ||||||| ||| ||||||||||||||||| ||||
Sbjct 270 GTGACCTCAGCCTCACGGACAGATCCGAGTGCAATGCTGGACGAGACGTGGAACGGGACC 329
Query 379 TGGTTGTGTTTGAAGTCATCTCATTTGCCTTCTTTCTCTTCTCCTCCCTTGTGGCTCAAG 438
| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 330 TCGTTGTGTTTGAAGTCATCTCATTTGCCTTCTTCCTCTTCTCCTCCCTAGTGGCTCAAG 389
Query 439 GGATGAAGCTAGCCATCAACCTTTTGAACAGCAAAGAAACGGACGAAGTGTTTAAAGCGA 498
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 390 GGATAAAGCTATCCATCAACCTTTTGAACAGCAAAGAAACGGACGAAGTGTTTAAAGCAA 449
Query 499 ATATCAACAGAGATGTGCTTCGTTTCGGTGTGGTTGGTGCAGCTGGTGGATCTATCTTGG 558
||||||| || ||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 450 ATATCAATAGTGATGTGCTTCGTTTCGGTGTGCTTGGTGCAGCTGGTGGATGTATCTTGG 509
Query 559 GTTGTGTATTTCTTCTGTTGTCAATTGTTGATGTTATACAACTCCGTCTGGGGCTTCTCT 618
| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 510 GCTGTGTATTTCTTTTGTTGTCAATTGTTGATGTTATCCAACTCCGTCTGGGGCTTCTCT 569
Query 619 CTTGCGGCAATGCTTTGGCGATTCATACCGTGCTGGTGCTTGTGGTATTGGTCTCTTCTG 678
| ||||||||||||||| |||||||||||||||| | ||||||||| |||||||||||||
Sbjct 570 CCTGCGGCAATGCTTTGACGATTCATACCGTGCTAGCGCTTGTGGTCTTGGTCTCTTCTG 629
Query 679 CTCTCAGTGTTTATATCTTCACAGTGTTCTACTCTTTCAGGAAATGATTG 728
||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 630 CTCTCAGTGTTTACATCTTCACTGTGTTTTACTCTTTCAGGAAATGATTG 679
Score = 154 bits (83), Expect = 1e-36
Identities = 88/90 (98%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 1 TAAACCAAACACCACCCACTCTTAAACAACATTACCAAATCATATTCAAAAGGGAATCAT 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1 TAAACCAAACACCACCCACTCTTAAACAACATTACCAAATCA-ATTCAAAAGGAAATCAT 59
Query 61 AAGAACACAACAGAAGATTATGATCCACCA 90
||||||||||||||||||||||||||||||
Sbjct 60 AAGAACACAACAGAAGATTATGATCCACCA 89
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31908881529
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5