BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01590.1
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346658 jgi|Araly1|346658|fgenesh1_pg.C_scaffold_5000050 531 5e-150
> Ahg346658 jgi|Araly1|346658|fgenesh1_pg.C_scaffold_5000050
Length=504
Score = 531 bits (287), Expect = 5e-150
Identities = 374/414 (90%), Gaps = 14/414 (3%)
Strand=Plus/Plus
Query 170 CTCCGTCAAAGAAACCGTTAAAACTAAGAC-AAGTGAGCAAACAAATGGGAAGTCAAAAC 228
||||||| ||||||||| ||||||||| | ||||||||||||||||||||| |||||||
Sbjct 92 CTCCGTCGAAGAAACCGGCAAAACTAAG-CAAAGTGAGCAAACAAATGGGAAATCAAAAC 150
Query 229 CAG------C---A--A-CGACGAGGCAACAAGCCTTCGATAGCACAGATTGAGAGAGCT 276
||| | | | |||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 151 CAGCAATTACGGAAGCAGCGACGAGGCAACAAGCCTTCGATAGCTCAGATCGAGCGAGCA 210
Query 277 TTTGGCTCTGGATCATATCGTGATTCCGAAGGGGAAATGGATATGAATACGGTATTCGAT 336
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 TTTGGCGCTGGATCATATCGTGATTCCGAAGGGGAAATGGATATGAATACGGTATTCGAT 270
Query 337 GAGCTTCTATTAGGCCATGCTAATAAATTCGAAAGTAAGATCGAGAAGAAGCTACGGGAG 396
|||||| || ||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 271 GAGCTTTTACTAGGCCATGCTAATAAATTCGAAAGTAAGCTGGAGAAGAAGCTACGAGAG 330
Query 397 ATTGGCGAAATCTTTGTAGCTCGAACAGAGCCTAAGCTTCGTTCCTCGGGGAAACCAGTT 456
||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 331 ATTGGGGAAATCTTCGTAGCTCGAACAGAGCCTAAGCTCCGTTCCTCCGGGAAACCAGTT 390
Query 457 TTGATGTTTACAATTCAATGGATTCTTCCAATATGGATTATGTCACTGCTCGTAGCTTGT 516
||||||||||| |||||||||||||||| |||||||||||||| |||||| ||||||||
Sbjct 391 CTGATGTTTACACTTCAATGGATTCTTCCCATATGGATTATGTCTCTGCTCATAGCTTGT 450
Query 517 GGAGTTATCAAACTCCCTTTTAGCATCCCTTTCCTTGATGACTTGATCATGTGA 570
|||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 451 GGAGTTATCAAACTCCCTTTTAGCCTCCCATTACTTGATGACTTGATCATGTGA 504
Score = 139 bits (75), Expect = 3e-32
Identities = 85/90 (94%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 46 ATGGCGGTGTTATCCACCATCTACTCCATCACCAGAGCTTCAACGCCTACTATGGCGTCT 105
|||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGCGGTCTTATCCACCATCTTCTCTATCACCAGAGCTTCAACGCCTCCTATGGCGTCT 60
Query 106 CTAACTAATGACTCACCGTCTCCACTTCCT 135
||||||||||||||||| ||||||||||||
Sbjct 61 CTAACTAATGACTCACCCTCTCCACTTCCT 90
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36750491988
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5