BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01600.1
Length=2127
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935879 jgi|Araly1|935879|scaffold_500070.1 2638 0.0
> Ahg935879 jgi|Araly1|935879|scaffold_500070.1
Length=1736
Score = 2638 bits (1428), Expect = 0.0
Identities = 1643/1743 (94%), Gaps = 29/1743 (2%)
Strand=Plus/Plus
Query 154 TCCGATGGGAACGCTACAGTCATGGAGAAAAGCCTATGGAGCCCTAAAAGACTCCACCAA 213
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 22 TCCGATGGGAACGCTTCAGTCATGGAGAAAAGCTTACGGAGCCCTAAAAGACTCCACCAA 81
Query 214 AGTCGGACTTGTCCGTGTCAACAGCGAATACGCCGATTTAGATGTTGCCATAGTCAAAGC 273
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 82 AGTCGGCCTTGTCCGTGTCAACAGCGAATACGCCGATTTAGATGTCGCCATAGTCAAAGC 141
Query 274 TACCAATCATGTTGAGTGTCCTCCCAAAGATCGCCATCTCAGAAAAATCTTCGCTGCAAC 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 TACCAATCATGTTGAGTGTCCTCCCAAAGATCGCCATCTCAGAAAAATCTTCGCTGCAAC 201
Query 334 ATCAGTGACTCGTGCTCGAGCAGATGTTGCTTATTGTATTCACGCCCTTTCACGGCGTTT 393
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 202 ATCAGTGACTCGTGCTCGAGCAGATGTTGCTTATTGTATTCACGCTCTTTCCCGGCGTTT 261
Query 394 GCATAAAACCAGGAATTGGACGGTTGCTTTGAAAACACTAATTGTGATACATCGGCTTCT 453
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 262 GCATAAAACCAGGAATTGGACGGTTGCTTTGAAAACACTAATTGTTATTCATCGGCTTCT 321
Query 454 AAGGGAAGGAGATCCAACTTTCAGAGAGGAACTATTGAATTTTTCGCAGAGAGGGCGGAT 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 322 AAGGGAAGGAGATCCAACTTTCAGAGAGGAACTATTGAATTTTTCGCAGAGAGGGCGAAT 381
Query 514 TTTGCAACTTTCTAATTTTAAGGATGATTCAAGTCCTATTGCTTGGGATTGTTCAGCTTG 573
|||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 382 TTTGCAGCTTTCTAATTTTAAGGATGATTCAAGCCCTATTGCCTGGGATTGTTCAGCTTG 441
Query 574 GGTACGTACTTATGCATTGTTTCTTGAGGAACGGCTTGAATGCTTCAGGGTTTTAAAATA 633
|||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 442 GGTACGTACTTATGCACTATTTCTCGAGGAACGGCTTGAATGCTTCAGGGTTTTAAAATA 501
Query 634 TGATACTGAGGCCGAACGTCTTCCGAAATCTAACCCAGGGCAGGATAAGGGGTATAGTAG 693
|||||||||||| ||||||||||| || |||| ||| |||||||||||||||||||||||
Sbjct 502 TGATACTGAGGCAGAACGTCTTCCCAAGTCTACCCCGGGGCAGGATAAGGGGTATAGTAG 561
Query 694 AACCAGGGATTTAGATGGTGAAGAACTCTTGGAGCAGTTGCCAGCTTTGCAGCAGCTTCT 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 AACCAGGGATTTAGATGGTGAAGAACTCTTGGAGCAGTTGCCAGCTTTGCAGCAGCTTCT 621
Query 754 CTATCGTCTCATCGGTTGCAGGCCGGAAGGTGCCGCTAACCACAATCATGTTATACAATA 813
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 622 CTATCGTCTCATCGGTTGCAGGCCAGAAGGTGCTGCTAACCACAATCATGTTATACAATA 681
Query 814 TGCACTTGCTCTGGTGTTGAAAGAGAGTTTTAAAGTCTATTGTGCTATTAATGATGGAAT 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 TGCACTTGCTCTGGTGTTGAAAGAGAGTTTTAAAGTCTATTGTGCTATTAATGATGGAAT 741
Query 874 CATCAATCTCATTGACAAGTTCTTTGAAATGGCAAAACATGAAGCCATCACTTCCCTTGA 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 CATCAATCTCATTGACAAGTTCTTTGAAATGGCAAAACATGAAGCCATCACTTCCCTTGA 801
Query 934 AATATACAAGCGTGCGGGTCAGCAGGCTCGTAGCCTTTCTGATTTCTATGAAGCCTGCAA 993
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 GATATACAAGCGTGCGGGTCAGCAGGCTCGTAGCCTTTCTGATTTCTATGAAGCCTGCAA 861
Query 994 AGGATTGGAACTTGCAAGGAATTTTCAATTTCCTGTTCTAAGAGAGCCTCCACAATCTTT 1053
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 AGGATTGGAACTTGCTAGGAATTTTCAATTTCCTGTTCTAAGAGAGCCTCCACAATCTTT 921
Query 1054 TCTGACAACAATGGAGGAGTATATTAAAGAAGCACCGCGTGTTGTCGATGTCCCAGCGGA 1113
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 922 TCTGACAACAATGGAGGAGTATATTAAAGAAGCACCGCGGGTTGTCGATGTCCCAGCAGA 981
Query 1114 ACCACTGCTTCTAACATATAGGCCGGATGATGGACTGACTACCGAAGATACTGAACCGTC 1173
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 982 ACCACTGCTTCTAACATATAGGCCGGATGATGGACTGACTGCCGAAGATACTGAATCGTC 1041
Query 1174 GCATGAAGAACGTGAAATGTTACCTTCAGATGATGTCGTTGTTGTATCTGAAGAAACAGA 1233
|| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1042 GCTTGAAGAACGTGAAATGTTACCTTCAGATGATGTCGTTGT---ACCTGAAGAAACAGA 1098
Query 1234 ACCTTCTCCCCCGCCTCCTCCTTCAGCCAACGCTCAGAACTTCATTGATACCGATGATCT 1293
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1099 ACCTTCTCCCCCGCTTCCTCCTTCAGCCAACGCTCAGAACTTCATTGACACCGATGATTT 1158
Query 1294 A-TGGGGTCTGAATACTGGTGCTCCTGATACATCAGTGATCGAAGACCAAAATGCACTTG 1352
| |||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1159 ACTGGG-TCTGAACACTGGTGCTCCTGATGCATCAGTTATCGAAGACCAAAATGCACTTG 1217
Query 1353 CTTTAGCCATTGTTTCAACAGATGCTGATCCTCCAACTCCTCATTTTGGTCAACCAAATA 1412
||||||||||| ||||||| |||||| ||||| |||| |||| |||||||||| |||||
Sbjct 1218 CTTTAGCCATTATTTCAACTGATGCTAATCCTTCAACGCCTCGTTTTGGTCAAGCAAATG 1277
Query 1413 ATTACGATCCTACAGGATGGGAGCTTGCCTTGGTGACAGCACCTAGCAGCGATATCTCTG 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 ATTACGATCCTACAGGATGGGAGCTTGCCTTGGTGACAGCACCTAGCAGCGATATCTCTG 1337
Query 1473 CATCCACTGAGAGAAAACTGGCTGGAGGGTTAGATACGCTTACACTTAGCAGTCTATACG 1532
||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 CATCCACAGAGAGGAAATTGGCTGGAGGGTTAGATACGCTTACACTTAGCAGTCTATACG 1397
Query 1533 ATGATGGAGCCTACATAGCTTCCCAACGTCCTGTCTACGGTGCACCAGCTCCCAATCCAT 1592
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 1398 ATGATGGAGCCTACATAGCTTCCCAGCGCCCTGTGTACGGTGCACCAGCTCCCAATCCAT 1457
Query 1593 TTGCGTCCCATGACCCGTTTGCATCGTCCAATGGCACAGCTCCCCCACCTCAGCAGCAAG 1652
|||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||||| ||
Sbjct 1458 TTGCGTCCCATGACCCTTTTGCGTCGTCCAATGGTACAACTCCCCCACCTCAGCAGCCAG 1517
Query 1653 CGGTGAACAACCCATTCGGTGCTTACCAGCAGACATATCAGCATCAGCCCCAGCCAACGT 1712
|||| |||||||| ||| |||||||||||| |||||||||||||| | | |
Sbjct 1518 CGGTCAACAACCCCTTCAGTGCTTACCAGCCGACATATCAGCATC--C----G------T 1565
Query 1713 ATCAGCATCAGTCCAACCCTCCCACTAATAATAGTAATCCATTTGGTGATTTTGGGGAAT 1772
| || | || | ||| || ||||||||||| ||||||||||||||||||||||
Sbjct 1566 --C--CA--A--CC--C--TCCTACCAATAATAGTAACCCATTTGGTGATTTTGGGGAAT 1613
Query 1773 TCCCGGTTAACCCGGTTTCACAGCAGCCAAATACCTCCGGTTATGGTGATTTCTCGGTAA 1832
||||||| ||||||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct 1614 TCCCGGTGAACCCGGTTTCACAGCAGCCAAATACCACAGGTTATGGTGATTTCGCGGTAA 1673
Query 1833 ACCAACATAACAACCCGTTCCGTAGCACTGGCCTCATTTGATCATGTTGTCTATTCATGT 1892
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct 1674 ACCAACATAACAACCCTTTCCGCAGCACTGGCCTCCTTTGATCATGTTGTCTATTCACGT 1733
Query 1893 TTG 1895
|||
Sbjct 1734 TTG 1736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80027604745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5