BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01610.1
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935881 jgi|Araly1|935881|scaffold_500072.1 998 0.0
Ahg471678 jgi|Araly1|471678|fgenesh2_kg.1__1632__AT1G14890.1 137 1e-31
> Ahg935881 jgi|Araly1|935881|scaffold_500072.1
Length=719
Score = 998 bits (540), Expect = 0.0
Identities = 665/721 (92%), Gaps = 26/721 (4%)
Strand=Plus/Plus
Query 10 AATTT-TGAAAATAGTGAAAATGGTAACCGTAAGCCAAAGTCA-CACGACGACGTTTCTC 67
||||| |||||||||||||||||| | | |||||||||| | |||||||||||||
Sbjct 2 AATTTCGGAAAATAGTGAAAATGGT-A--G---GCCAAAGTCATC-CGACGACGTTTCTA 54
Query 68 TTCTTCACCACATTTCTCTTGATATT-CGGATCAATCTCAGCCGTCCGTTTGCTTCCACG 126
||||||||||| |||||||| || || | |||||||||||||||||||||| | ||||||
Sbjct 55 TTCTTCACCACCTTTCTCTTCAT-TTCCAGATCAATCTCAGCCGTCCGTTTTCCTCCACG 113
Query 127 ACCAAACACTACAACAACCAACGATCTAGATTTCATCCGAACAAGCTGCAACGCTACTCT 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 ACCAAACACTACAACAACCAACGATCTAGATTTCATCCGAACAAGCTGCAACGCTACTCT 173
Query 187 ATATCCAGACGTCTGCTTCACGTCACTCTCCGGCTACGCCTCTGCCGTTCAAGACAGTCC 246
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 174 ATATCCAGACGTCTGCTTCACGTCACTCGCCGGCTACGCCTCCGCCGTTCAAGACAGTCC 233
Query 247 GGCGAGGCTAGCCAAGCTCGCAATCGGCGTTTCACTTTCACAAGCCAAATCCACTGCGGC 306
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 234 GGCGAGGCTAGCCAAGCTCGCAATCGGCGTTTCACTATCGCAAGCCAAATCCACGGCGGC 293
Query 307 TTTTCTCTCCAAACTCTCACGCTCTGCCG-C-T-A-----------A-ATACTCCGGTGA 351
|| ||||||||||||||||||||| |||| | | | | ||||||||| ||
Sbjct 294 TTATCTCTCCAAACTCTCACGCTCCGCCGCCGTAACCTCTGCGGCTAGATACTCCGGCGA 353
Query 352 TGGCCACCAAACAGCTTCCGCCGTAATCCGAGACTGCGTTTCGAACGTCGAAGACGCGGT 411
|||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || ||
Sbjct 354 TGGCCACCAAACTGCTTCCGCCGTAATCCGTGACTGCGTTTCGAACGTTGAAGATGCAGT 413
Query 412 GGACGAGATGAGAGGATCTCTCCGTCAACTACGCGACATGAACGGCAGAGGAGGCGGCAC 471
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||
Sbjct 414 GGACGAGATGAGAGGATCTCTCCGACAACTACGCGACATGAACGGCAGAGGCGGCGTCAC 473
Query 472 GGCAGCTCGGAGGTCGGTAGAAACGTTTAGGTTCCAGATGAGTAACGTGCAGACGTGGAT 531
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 474 GGCGGCTCGGAGGTCGGTGGAAACGTTTAGGTTTCAGATGAGTAACGTGCAGACGTGGAT 533
Query 532 GAGTGCAGCATTGACGGATGAGGACACGTGTACGGATGGATTTGAAGATATGGACGAAGG 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GAGTGCAGCATTGACGGATGAGGACACGTGTACGGATGGATTTGAAGATATGGACGAAGG 593
Query 592 AGGATTGATTAAGACGACCGTTTGTGATCGGCTCGAGGAAGTGAAGAGGCTAACGAGTAA 651
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 594 AGGATTGATTAAGACGACCGTTTGTGATAGGCTCGAGGAAGTGAAGAGGTTAACGAGTAA 653
Query 652 TGCTCTTGCCCTTGTCAACACTTACGCCAACAATGGAGCTCCATGACCATGAGACCATGA 711
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 654 TGCTCTTGCCCTTGTCAACACTTATGCCAACAATGGAGCTCCTTGACCATGAGACCATGA 713
Query 712 G 712
|
Sbjct 714 G 714
> Ahg471678 jgi|Araly1|471678|fgenesh2_kg.1__1632__AT1G14890.1
Length=903
Score = 137 bits (74), Expect = 1e-31
Identities = 159/199 (80%), Gaps = 10/199 (5%)
Strand=Plus/Plus
Query 497 TTTAGGTTCCAGATGAGTAACGTGCAGACGTGGATGAGTGCAGCATTGACGGATGAGGAC 556
|||||||| ||||||||||||||||||||||||||||| || || |||||||| |||||
Sbjct 491 TTTAGGTTTCAGATGAGTAACGTGCAGACGTGGATGAGCGCTGCGTTGACGGACGAGGAG 550
Query 557 ACGTGTACGGATGG-ATTT-GAAG-ATATGGACGAAGGAGGATTGATTAAGACGACCG-T 612
|||||||||||||| || | || | ||||| || |||| | || |||||| | | |
Sbjct 551 ACGTGTACGGATGGGATCACGGAGGAGATGGAGGACGGAG-A--GACGAAGACGGC-GAT 606
Query 613 TTGTGATCG-GCTCGAGGAAGTGAAGAGGCTAACGAGTAATGCTCTTGCCCTTGTCAACA 671
||| ||| | | ||| || || |||||| | ||||||||||| ||||| || || ||||
Sbjct 607 TTGCGATAGAG-TCGCCGACGTCAAGAGGTTCACGAGTAATGCGCTTGCTCTCGTTAACA 665
Query 672 CTTACGCCAACAATGGAGC 690
| || ||||| ||||||||
Sbjct 666 CATATGCCAATAATGGAGC 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33510044043
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5