BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01620.1
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935883 jgi|Araly1|935883|scaffold_500074.1 1254 0.0
> Ahg935883 jgi|Araly1|935883|scaffold_500074.1
Length=907
Score = 1254 bits (679), Expect = 0.0
Identities = 824/893 (92%), Gaps = 14/893 (2%)
Strand=Plus/Plus
Query 92 Tgaaga-agaagaagaagaagaaTGGAGATCCGTTCACGAGGTTTTATTAATCGTTCTTC 150
||| || ||| || |||||||||||| |||| |||||||||||||||||||| || ||||
Sbjct 19 TGATGAGAGAGGAGGAAGAAGAATGGCGATCAGTTCACGAGGTTTTATTAATTGTCCTTC 78
Query 151 CTTATCTTCATT-CTCTGTTCGAGCTTCTCTCTATGATTCGCGTTTCGCGATCTCTCAGA 209
|||||||||||| || ||||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 79 CTTATCTTCATTCCT-TGTTCGAGCTTCTCTCTATGACTCGCGTTTCTCGATCGCTCAGA 137
Query 210 GACGCGATCAGAGACGAAACCGCGTTATGGACAAAAC-TCGTTATTGAACCACCGTTGAG 268
||||| ||||||||||||||||| || ||||| |||| ||||| ||||||||||||||||
Sbjct 138 GACGCCATCAGAGACGAAACCGCCTTGTGGAC-AAACTTCGTTGTTGAACCACCGTTGAG 196
Query 269 CTCTCGTCTAACCGATGATATTCTATCGGAGTTCAGTTCCAAATCCGCCGGAAAGCTGAA 328
|||||||| ||||||||||||||||||||| ||| ||| ||||| ||||||||||| ||
Sbjct 197 TTCTCGTCTGACCGATGATATTCTATCGGAGATCACTTCGAAATCTGCCGGAAAGCTCAA 256
Query 329 AACTCTGATTCTCCGGCAATGTCTTATGGTCACCAACAAGGGACTCCGTCGTGTTGTGGA 388
|||||||||||||| |||||||||| ||||||| ||||||||||||||||||| |||||
Sbjct 257 GACTCTGATTCTCCGTCAATGTCTTAGGGTCACCGACAAGGGACTCCGTCGTGTGGTGGA 316
Query 389 TGCTAATCCTCTCATCACTAAGATAATTGTGCCTGGATGCTCTGGATTGACTCCTGAAGG 448
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 317 TGCTAATCCTCTCATCACTAAGATAATTGTGCCTGGATGCTCTGTATTGACTCCTAAAGG 376
Query 449 AATCATGGAATGTGTTGAAAGCTTGTCTAAGAACAATCATAAACTAGAGACACTTCACAT 508
||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 377 AATCATGGAATGTGTTGAAAGCTTGTCCAAGAACAACCATAAACTGGAGACACTTCACAT 436
Query 509 CAATGGCGTCAATGGCTTTACCAAACAACATCTCTCAGCACTGTATACTTACCTTTCTTC 568
|||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |
Sbjct 437 CAATGGCGTCAATGGCTTTACCAAACAACATCTCTCAGTACTTTCGACTTACCTTTCTCC 496
Query 569 CGAGGGAACGATTGACCTCGAGGTCTGTCCCAAATGCGATGAAGTAAGGATGATTCCGTC 628
|||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| |
Sbjct 497 CGAGGGAACGATCGACCTCGAGGTCTGTCCCAAATGCGATCAAGTAATGATGATTCCGCC 556
Query 629 TTGCTCAAGAGAATCATGTAA-C-CA-GAA-GCAACGCAAGTGCCGTGGATGCTGGCTTT 684
||||||||||||||||||||| | | ||| | ||||||||||||| |||||||||||||
Sbjct 557 TTGCTCAAGAGAATCATGTAAGCAAACGAATG-AACGCAAGTGCCGGGGATGCTGGCTTT 615
Query 685 GTATCCCTAGATGTGCAGAGTGCGCAGTGTGCCTTGTTGGTTCAGATACTGAGAGTCAAG 744
||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct 616 GTATCCCTAGATGTGCAGAGTGCTCAGTGTGCCTTGTTGCTCCAGATACTGAGAGTCAAG 675
Query 745 AAGCAGCGTGTGGTAATGATGATGTTCTGTGTCTTGAATGTTGGCTTGTGCTTCCCAAGT 804
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 676 AAGCAGCGTGTGGTAATGACGACGTTCTGTGTCTTGAATGTTGGCTTGTGCTTCCCAAGT 735
Query 805 GCAGATTCTGCAATAAACCATATTGCACTAATCACAGTAGTCGTCGACATGAGATTGCAA 864
|||| |||||||| ||||| |||||||||| |||||| ||||||||||||||||||||||
Sbjct 736 GCAGGTTCTGCAACAAACCCTATTGCACTATTCACAGCAGTCGTCGACATGAGATTGCAA 795
Query 865 TCACTGATGCTGCATCTCGGCCTTCGTTTGAATGTGAAGCTTGTTACTATAGGGCAGGTA 924
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 796 TCACTGATGCTGCGTCTCGGCCTTCGTTTGAATGCGAAGCTTGTTACTATAGGGCAGGTA 855
Query 925 CAAACCCATATGAAGTCGACTATCAAATCTAAAC-AAA--CACTTTGTTGTCT 974
||||||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct 856 CAAACCCATATGAAGTCGACTATCAAATCTAAAAGAAAAACACTT-GTTGTCT 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38161039917
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5