BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01630.1
Length=1933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484077 jgi|Araly1|484077|fgenesh2_kg.5__69__AT2G01630.1 3046 0.0
> Ahg484077 jgi|Araly1|484077|fgenesh2_kg.5__69__AT2G01630.1
Length=1829
Score = 3046 bits (1649), Expect = 0.0
Identities = 1773/1833 (97%), Gaps = 7/1833 (0%)
Strand=Plus/Plus
Query 84 TTACTTGAGAGAACCTCGAGACCTGTCTTGTCTTTATGCTTCAGAAGCAAATCAAAGCAT 143
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTACTTCAGAGAACCTCGAGACCTGTCTTGTCTTTATGCTTCAGAAGCAAATCAAAGCAT 60
Query 144 CTCTCCAAGATTTGAAGCTCCATCTATGGCTGCCCTTCTTCTCCTTTTCCTTTTCCTCTT 203
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 CTCCCCAAGATTTGAAGCTCCATCAATGGCTGCCCTTCTTCTCCTTTTCCTTTTCCTCTT 120
Query 204 CGCAAGCTCTGCTCTCTCTCAAGATTCTTTGATCGGTGTGAATATTGGTACTGAAGTGAC 263
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGCAAGCTCTGCTCTCTCCCAAGATTCTTTGATCGGTGTGAATATTGGTACTGAAGTGAC 180
Query 264 AAACATGCCAAGTCCAACACAAGTAGTAGCACTCCTCAAATCACAGAACATCAACCGCGT 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 AAACATGCCAAGTCCAACACAAGTAGTAGCACTCCTCAAATCACAGAACATCAACCGTGT 240
Query 324 CCGCCTCTATGACGCAGACCGCTCAATGCTTCTCGCGTTTGCTCACACCGGGGTTCAAGT 383
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 CCGCCTCTATGACGCAGACCGCTCAATGCTTCTCGCGTTTGCTCACACCGGCGTTCAAGT 300
Query 384 TATAATCTCAGTACCTAACGACCAGCTTCTCGGTATCAGCCAATCAAATGCAACCGCAGC 443
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 301 TATAATCTCAGTCCCTAACGACCAGCTTCTCGGTATCAGCCAATCAAACGCAACTGCAGC 360
Query 444 CAATTGGGTGACTAGAAATGTAGCTGCATATTACCCTGCGACCAACATTACCACAATTGC 503
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 361 CAATTGGGTCACTAGAAATGTAGCTGCTTATTACCCTGCGACCAACATTACCACAATCGC 420
Query 504 TGTCGGATCAGAAGTCCTAACCAGCCTAACAAACGCAGCTTCTGTCCTTGTCTCAGCCCT 563
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 421 GGTCGGATCAGAAGTCCTAACCAGCCTACCAAACGCAGCGTCTGTCCTTGTCTCAGCCCT 480
Query 564 CAAATACATACAAGCTGCTCTCGTCACGGCCAATCTCGACCGTCAGATCAAAGTATCGAC 623
||||||||| |||||||||||| |||| |||||||| |||||||||||||||||||||||
Sbjct 481 CAAATACATCCAAGCTGCTCTCATCACCGCCAATCTTGACCGTCAGATCAAAGTATCGAC 540
Query 624 ACCGCACTCTTCAACCATCATTCTTGATTCTTTCCCTCCTTCGCAAGCTTTCTTCAACAA 683
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 541 CCCTCACTCTTCAACCATCATTCTTGATTCTTTCCCTCCTTCACAAGCTTTCTTCAACAA 600
Query 684 GACTTGGGATCCAGTTATTGTCCCTCTCCTCAAATTCCTACAGTCCACAGGATCGCCATT 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GACTTGGGATCCAGTTATTGTCCCTCTCCTCAAATTCCTACAGTCCACAGGATCGCCATT 660
Query 744 GCTGCTCAACGTTTACCCGTATTTCGACTATGTTCAGTCCAATGGAGTTATACCGCTTGA 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCTGCTCAACGTTTACCCGTATTTCGACTATGTTCAGTCCAATGGAGTTATACCGCTTGA 720
Query 804 CTACGCGCTTTTCCAGCCTCTCCAAGCCAACAAAGAAGCTGTAGACGCCAACACATTGTT 863
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTATGCGCTTTTCCAGCCTCTCCAAGCCAACAAAGAAGCTGTAGACGCCAACACATTGTT 780
Query 864 ACATTACACAAACGTTTTTGATGCAATCGTAGACGCTGCTTATTTTGCAATGTCTTATCT 923
|||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 781 ACATTACACAAATGTTTTTGATGCAATTGTTGACGCTGCATATTTTGCAATGTCTTATCT 840
Query 924 TAACTTCACCAACATTCCAATCGTGGTCACAGAATCTGGATGGCCATCTAAAGGAGGCCC 983
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 841 TAACTTCACCAACATTCCAATCGTGGTCACAGAATCCGGATGGCCATCTAAAGGAGGCCC 900
Query 984 TTCTGAGCACGACGCAACGGTAGAGAATGCAAACACTTACAATAGCAATTTGATCCAGCA 1043
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 901 GTCTGAGCATGACGCAACTGTAGAGAACGCAAACACTTACAATAGCAATTTGATCCAGCA 960
Query 1044 TGTGATCAACAAGACTGGAACGCCAAAACACCCGGGAACTGCAGTTACTACATACATCTA 1103
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CGTGATCAACAAGACTGGAACGCCAAAACACCCGGGAACTGCAGTTACTACATACATCTA 1020
Query 1104 CGAGCTTTACAACGAGGATACGAGGCCAGGACCGGTATCTGAGAAGAACTGGGGGCTGTT 1163
|||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1021 CGAGCTTTACAATGAGGATACGAGGCCAGGACCGATATCTGAGAAGAATTGGGGGCTGTT 1080
Query 1164 TTATACAAACGGGACTCCGGTTTACACATTGCGTTTAGCGGGTGCAGGGGCGATTCTGGC 1223
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1081 TTATACAAACGGGACTCCGGTTTACACATTGCGTTTGGCTGGTGCAGGGGCGATTCTGGC 1140
Query 1224 AAATGATACTACAAACCAGACATTTTGTATAGCGAAGGAAAAGGTTGATAGAAAGATGCT 1283
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1141 AAATGATACTACAAACCAGACATTTTGTATAGCGAAGGAAAAGGTTGATAAAAAGATGCT 1200
Query 1284 TCAAGCAGCTCTTGACTGGGCTTGCGGTCCAGGGAAGGTCGATTGCTCGGCACTGATGCA 1343
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1201 TCAGGCAGCTCTTGACTGGGCTTGCGGTCCAGGGAAAGTCGATTGCTCGGCACTGATGCA 1260
Query 1344 GGGAGAGTCATGTTATGAACCCGACGATGTGGTTGCACATTCTACTTATGCGTTTAATGC 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GGGAGAGTCATGTTATGAACCCGACGATGTGGTTGCACATTCTACTTATGCGTTTAATGC 1320
Query 1404 TTATTACCAGAAGATGGGAAAAGCTTCAGGAAGCTGTGATTTCAAAGGAGTTGCTACAGT 1463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TTATTACCAGAAGATGGGAAAAGCTTCAGGAAGCTGTGATTTCAAAGGAGTTGCTACAGT 1380
Query 1464 CACCACCACTGATCCAAGTCGAGGAACATGCGTGTTCCCTGGAAGTGCAAAAAGCAATCA 1523
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1381 CACCACCACTGATCCAAGTCGAGGAACATGTGTGTTCCCTGGAAGTGCGAAAAGCAATCA 1440
Query 1524 GACACTTGGAAACAACACCTCGGCGTTGGCCCCCTCAGCGAACTCTACAACCTCTGGATG 1583
||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1441 GACACTTGGAAACAACACCACGGCGTTAGCCCCCTCAGCGAACTCTACAACATCTGGATG 1500
Query 1584 TATCCCAAAGTACTATCATCACCCTCACGCATCTTTCGGTGACTTAACATTACTCTCCCT 1643
||||||||||||||||| | || |||||||||||| |||||||||||||||||||||||
Sbjct 1501 CATCCCAAAGTACTATCA-C-CC-TCACGCATCTTTTGGTGACTTAACATTACTCTCCCT 1557
Query 1644 TCTACTGATCATTGCCTTAGTATTCTTGTAGAAACTCTGAAAAGAACAACAAC---TCTC 1700
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1558 TCTACTGATCGTTGCCTTAGTATTCTTGTAGAAACTCTGAAAAGAACAACAACAACTCTC 1617
Query 1701 AATTCTTGTTTCTCTAAATTTTAACTTCTTTCTTTGCAACACTTGAGACAAAAGAGCTCG 1760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 AATTCTTGTTTCTCTAAATTTTAACTTCTTTCTTTGCAACACTTGAGACAAAAGAGCTCG 1677
Query 1761 GTGGGTTTGTTCTCTCTGTGTCTAGTTGTCTACCCAGTTTTGTTGATCATCTCCTTTTAA 1820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 GTGGGTTTGTTCTCTCTGTGTCTAGTTGTCTACCCAGTTTTGTTGATCATCTCCTTTTAA 1737
Query 1821 CATGGAGTTCATTGAGGGTAGCATGTAGGTTCGGCTTCAAGATCATGGATGATTGTAACT 1880
|| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1738 CAAGGAGTTCATTGAGGGTAGCCTGTAGGTTCGGCTTCAAGATCATCGATGATTGTAACT 1797
Query 1881 AATTTCCTGTGTTGAAAGCTTGATTCTTTCTTT 1913
|||| ||||||||||||||||||||||||||||
Sbjct 1798 AATT-CCTGTGTTGAAAGCTTGATTCTTTCTTT 1829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72638097215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5