BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G01640.1

Length=676
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484079 jgi|Araly1|484079|fgenesh2_kg.5__71__AT2G01640.1           835    0.0  


> Ahg484079 jgi|Araly1|484079|fgenesh2_kg.5__71__AT2G01640.1
Length=569

 Score =  835 bits (452),  Expect = 0.0
 Identities = 533/571 (93%), Gaps = 9/571 (2%)
 Strand=Plus/Plus

Query  40   ATTAACCCGAGTTTGAAATCGTTGAAGATTTGAAGACACAGAATGGGCAAACCAAGCAAA  99
            ||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1    ATTAACCTGAGTTTGACATCGTTGAAAATTTGAAGACACAGAATGGGCAAACCAAGCAAA  60

Query  100  GGATCGGAAGTGACAACGAAGTCTGATAAGAAGTTTGAGAAGAAGCTTCAATTTTACACA  159
            |||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct  61   GGATCGGAAGTGACGACGAAATCTGATAAGAAATTCGAGAAGAAGCTTCAATTTTACACA  120

Query  160  AAGGTCAAAGATACAGTTACTTCTTTGTCTGTCCAAAAGGAGATTGGCAAGAAGAAGAAA  219
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  121  AAGGTCAAAGATACAGTTACTTCTTTGTCTGTTCAAAAGGAGATTGGCAAGAAGAAGAAA  180

Query  220  ATCCGCAGCCGACAAAAGAAGCTAAAGGCGTATGATCTCACCAACCTGTCGGAGTTTCTT  279
            ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct  181  ATCCGCAGCCGTCAAAAGAAGTTAAAGGCGTATGATCTCACCAACCTCTCGGAGTTTCTT  240

Query  280  CCCGAGTTCAATGCTCT-GCAGAAATCAGCTCTTCCTGCACCCGAGCTGAAAATGAACTG  338
            || ||||| ||||| || |||||| ||||||||||||||||||||| |||| ||||||||
Sbjct  241  CCTGAGTTTAATGC-CTTGCAGAAGTCAGCTCTTCCTGCACCCGAGTTGAAGATGAACTG  299

Query  339  TAAAAGGCGACAAAAGCTCGTATTGACAGAAGGGGAGAGATTGAATAAGGTTCTAGACCA  398
            ||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct  300  TAAAAGGCGACAAAAGCTCGTATTGACGGAAGGGGAAAGATTGAACAAGGTTCTAGACCA  359

Query  399  TCCAGCTTTTCAAGCTGATCCAGTTGGTTCGATATTTCAGCACTTGCTGAGTCAACAGCC  458
            |||||||||||||||||||||| ||||||| ||||||||||| ||||  |||||||||||
Sbjct  360  TCCAGCTTTTCAAGCTGATCCAATTGGTTCAATATTTCAGCATTTGCAAAGTCAACAGCC  419

Query  459  ACCGGTGgaagagaaaccgaagaagaagactaacactaatggaagcaagaaaaggaataa  518
            ||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct  420  ACCGGAGGAAGAGAAGCCGAAGAAGAAGACTAACACAAATGGAAGCAAGAAAAGGAATAA  479

Query  519  gaaaaaaggaaagaCTGATTCCATGGATTTCTGATCTTGTCCTATA-AG-T---TT-ACT  572
            ||||||||||||| |||| ||||||||||||||||||||||||||| || |   || |||
Sbjct  480  GAAAAAAGGAAAGGCTGAATCCATGGATTTCTGATCTTGTCCTATAGAGATAAATTTACT  539

Query  573  TAtgttttgtttttgttgttttgttATAGTA  603
            ||||||||||||| |||||||||||||||||
Sbjct  540  TATGTTTTGTTTT-GTTGTTTTGTTATAGTA  569



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24818018967


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5