BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01650.1
Length=1655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484080 jgi|Araly1|484080|fgenesh2_kg.5__72__AT2G01650.1 2588 0.0
> Ahg484080 jgi|Araly1|484080|fgenesh2_kg.5__72__AT2G01650.1
Length=1638
Score = 2588 bits (1401), Expect = 0.0
Identities = 1564/1641 (95%), Gaps = 17/1641 (1%)
Strand=Plus/Plus
Query 6 AACAAGATCATCCTCTGATTTTTCAGACACATATTTGTAATTTATAAAGTTTGTAGCTTT 65
||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||
Sbjct 1 AACAAGATCATCCTCTGATTTTTCAGACACAGATTTATAATTTAAAAAGTTTGTAGCTTT 60
Query 66 TTCCTTAGCTTGAGATTACAC-GAAGAAGAAGAAGATGGATGACGTTAAAGATAAGCTAA 124
|| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGTTTAGCTTGAGATTACACGGGAGAAGAAGAAGATGGATGACGTTAAAGATAAGCTAA 120
Query 125 AGGGATTCATGAAAAAAGTCAATCTCTCTTCTTCTTCCGGCAAATTCAAAGGCCAAGGTC 184
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGGGATTCATGAAGAAAGTCAATCTCTCTTCTTCTTCCGGCAAATTCAAAGGCCAAGGTA 180
Query 185 GGGTTCTCGGATCTTCTTCTTCTTCCTCTGCACC---ACCCGTTAACCCGATTCAGAACC 241
||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 181 GGGTTCTCGGA---TCTTCTTCTTCCTCTGCACCTGGACCCGTTAACCCGATTCATAACC 237
Query 242 GGTTTAACTCTTCCCAAGCTCCCAATCCGACTCCTAGACCCAAACCCAATCCAAATCCGT 301
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 238 GGTTTAACTCTTCCCAAGCTCCCAATCCGACTCCTAGACCCAAACCCAATTCGAATCCGT 297
Query 302 TGCCTGAGAAACCCTTATCCTCCTCCGATCAGAAGATTAGTGGGTCAACGAGAAACCCGG 361
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TGCCTGAGAAACCCATATCCTCCTCCGATCAGAAGATTAGTGGGTCAACGAGAAACCCGG 357
Query 362 ATCATGACCCGGTTCGTGCTCCACAAGATGGGTTTGACCCGTACGGTGCTTTCATAACGT 421
||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 358 ATCCTGACCCGGTTCGTGCTCCACAAGATGGGTTTGACCCGTTCGGTGCTTTGATAACGT 417
Query 422 CTTCGAACAGATCTCAGAACGGATATTCTCTGAGCATGTTCGAGTGTCCGATTTGTAAAA 481
||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 418 CTTCGAACAGATCTCAGAACGGATATTCTCTGAATATGTTTGAGTGTCCGATCTGTAAAA 477
Query 482 ATCCATTCACGTCAGAGGAAGAAGTCTCTGTTCATGTCGAGAGCTGTCTTGGGGACACTA 541
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 478 ATCCATTCACGTCAGAGGAAGAAGTCTCTGTTCATGTCGAGAGCTGTCTTGGGAACACTA 537
Query 542 ATGGAGACGAATCTTCATTTGAGAAGGAT-A-A-TAATGATAACGATAAATCCGAAATGG 598
||||||||||||||||||||||||||||| | | ||| ||||| |||||||||||||| |
Sbjct 538 ATGGAGACGAATCTTCATTTGAGAAGGATGATACTAAGGATAATGATAAATCCGAAATCG 597
Query 599 AGAAACTTGTGGTTGTGTATCTCTCTGGGAAGCCAAGTGAGAGCTCTATTGATGTTTTGC 658
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 598 AGAAACTTGTGGTTGTGTATCTCTCTGGGAAGCCAAGTGAGAGCTCCATTGATGTTTTGC 657
Query 659 TTAGGTTGTTTAAGAACATAGTGAAAGAACCTGAGAATGCTAAGTTTAGAAAAGTTAGAA 718
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 658 TTAGGTTGTTTAAGAACATAGTTAAAGAACCTGAGAATGCTAAGTTTAGAAAAGTTAGAA 717
Query 719 TGAGTAATGCTAAGATTAAAGAAGCTATTGGTGATGTTGCTGGAGGTGTCGAGCTTCTTG 778
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 718 TGAGCAATGCTAAGATTAAAGAAGCCATTGGTGATGTTGCTGGAGGTGTTGAGCTTCTTG 777
Query 779 AGTTGGTTGGTTTTGAATTGAAAGAGGAAAATGATGAGATTTGGGCTGTTATGGATGTTC 838
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGCTGGTTGGTTTTGAATTGAAAGAGGAAAATGATGAGATTTGGGCTGTTATGGATGTTC 837
Query 839 CTAGTGAAGAACAATC-TATATTGATCAATAAAGTTGTCGGATATCTAGAAAAGAGAAAG 897
|| ||||||||||||| || ||||||| |||||||||||| | ||||||||||||||||
Sbjct 838 CTGGTGAAGAACAATCGAAT-TTGATCAGTAAAGTTGTCGGGTTTCTAGAAAAGAGAAAG 896
Query 898 ACAGAGAGTTCAGGATCTTCAGCTCAGGTTATGGAACCTGTGGCTCCAAAGAAGATTGAT 957
||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 897 ACAGAGAATTCAGGATCTTCTGTTCAGGTTATGGAACCTGTGGCTCCAAAGAAGATAGAT 956
Query 958 AGAGAGATTCGTGTCTTTTTCTCGGTTTCTGAAAACGTAGCATCGAGAATAGAGGTACCT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AGAGAGATTCGTGTCTTTTTCTCGGTTTCTGAAAACGTAGCATCGAGAATAGAGGTACCT 1016
Query 1018 GATTCGTTCTATAGTCTCTCGGCGGATGAAATAAAGAGAGAAGCGGATTTACGGAGGAAA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GATTCGTTCTATAGTCTCTCGGCGGATGAAATAAAGAGAGAAGCGGATTTACGGAGGAAA 1076
Query 1078 AAGATTGCGGAGTCACAGCTTTTGATTCCAAGATCTTATAAGGAGAAACAAGCGAAAGCA 1137
||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1077 AAGATTGCGGAATCACAGCTTTTGATTCCTCGATCTTATAAGGAGAAACAAGCAAAAGCA 1136
Query 1138 GCTAGAAAGAGATACAAAAGAAGTATGATAAGAGTGCAGTTTCCTGACGGAGTTGTGCTT 1197
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1137 GCTAGAAAGAGATACAAAAGAAGTATGATAAGAGTGCAGTTTCCAGACGGAGTTGTGCTT 1196
Query 1198 CAAGGTGTGTTTGCTCCATGGGAACCTACTTTTGCTCTCTATGAGTTTGTGAGCTCTGCT 1257
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1197 CAAGGTGTGTTTGCTCCATGGGAACCTACCATTGCTCTCTACGAGTTTGTGAGCTCTGCT 1256
Query 1258 TTGAAAGAACCAAGTTTGCAGTTTGAGCTTCTGGATCCTGTGCTGGTTAAACGGCGTGTG 1317
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1257 TTGAAAGAACCAAGTTTGCAGTTTGAGCTTCTTGATCCTGTACTGGTTAAACGGCGTGTG 1316
Query 1318 ATTCCACATACTCCAGCCCCGGGACAGAAACCGATAACGTTAGAGGACGAAGAGCTTGTT 1377
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1317 ATTCCACATACTCCAGCCCCGGGACAGAAACCGATAACCTTAGAGGACGAAGAGCTTGTT 1376
Query 1378 CCGTCAGCGCTCATCAGGTTCAGACCGATCGAAACAGACTCTCTCGTCTTTACAGGACTC 1437
|| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1377 CCTTCAGCGCTCATCAAGTTCAGACCGATAGAAACAGACTCTCTCGTCTTTACAGGACTC 1436
Query 1438 CGCAATGAACTCCTGGAGATCAGTGAACCACTCTCGTGATCATTTGTGTTCCACTGATGA 1497
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1437 CGCAATGAACTCCTGGAGATCAGTGAACCACTCTCGTGATCATTTGTGTTCCACAGAAGA 1496
Query 1498 TTTAGCTTGAGCCCATGAAATAAGTTTACAAATTTAGGTTTCTCTCTTATATGGTGTGAT 1557
|||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1497 TTTAGCTTGAAACCATAAAATAAGTTTACAAATTTAGGTTTCTCTCTTGTATGGTGTGAT 1556
Query 1558 T--TGATGATGATTTGTGTTTGTGATTCGAGCACATTTTATAGGTTTAT-AAGAAATTTG 1614
| ||| ||||||||||||| |||||||||||||||||||||||||||| || |||||||
Sbjct 1557 TAATGA-GATGATTTGTGTTGGTGATTCGAGCACATTTTATAGGTTTATGAA-AAATTTG 1614
Query 1615 TGTCATTTGCACAATAAGAAG 1635
||||||||||||||||| |||
Sbjct 1615 TGTCATTTGCACAATAACAAG 1635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62049009105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5