BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01660.1
Length=1331
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484082 jgi|Araly1|484082|fgenesh2_kg.5__74__AT2G01660.1 1764 0.0
> Ahg484082 jgi|Araly1|484082|fgenesh2_kg.5__74__AT2G01660.1
Length=1194
Score = 1764 bits (955), Expect = 0.0
Identities = 1124/1204 (93%), Gaps = 17/1204 (1%)
Strand=Plus/Plus
Query 13 aaaaaaaGTCGCGACGTTCTCATTCTTTCTCGAAT--CATACCACagag--agagagaga 68
||||||||| ||||||||||||| ||||||||||| |||||||||||| ||||| |||
Sbjct 1 AAAAAAAGTTGCGACGTTCTCATACTTTCTCGAATCACATACCACAGAGACAGAGAAAGA 60
Query 69 ACAAAAAGAAGCAATCGTCGAAAGTCATGTTCGCTACAAAAAC-AGTTCTCTTTATCGCC 127
| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 61 A-AAAAAAAAGCAATCGTCGAAAGTCATGTTCGCTAC-AAAACTAGTTCTCTTTATCGCC 118
Query 128 GTCGTGTCACTTCTCGGAACGTTTTCATCCGCCGCTGTCGATACTTTTATCTACGGTGGT 187
|||||||||||||||||||| |||||||||||| | || |||||||| ||||||||||||
Sbjct 119 GTCGTGTCACTTCTCGGAACATTTTCATCCGCCACCGTTGATACTTTCATCTACGGTGGT 178
Query 188 TGCTCACAAGAAAAGTACTTTCCGGGATCGCCTTACGAGTCAAACGTTAACTCTCTACTC 247
|||||||||| |||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 179 TGCTCACAAGCAAAGTATTTTCCGGGATCGCCTTACGAGTCAAACGTAAACTCGCTACTA 238
Query 248 ACCTCGTTCGTTAGCTCAGCTTCTCTCTACACATACAACAACTTCACCACCAACGGAATC 307
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 239 ACCTCATTCGTTAGCTCAGCTTCTCTCTACACATACAACAACTTCACCGTCAACGGAATC 298
Query 308 TCCGGCGACAGT-TCCTCCGTCTACGGTTTGTACCAGTGTCGCGGTGATCTCTCCTCCGG 366
|||||||||| | |||||||||||||| ||||| ||||||||||| ||||||||||| ||
Sbjct 299 TCCGGCGACA-TCTCCTCCGTCTACGGATTGTATCAGTGTCGCGGCGATCTCTCCTCAGG 357
Query 367 CTCGGGAGATTGTGCAAGATGCGTCGCGCGAGCAGTAAGCCGTCTAGGGAGTCTCTGCGC 426
|||||||||||| ||||||||||| ||| |||| || ||| | || ||||||||||||||
Sbjct 358 CTCGGGAGATTGCGCAAGATGCGTTGCGAGAGCCGTTAGCAGACTCGGGAGTCTCTGCGC 417
Query 427 CATGGCAAGCGGTGGCGCGTTGCAGCTCGAAGGCTGTTTCGTTAAATACGACAACACGAC 486
|||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 418 CATGGCGTGCGGGGGCGCGTTGCAGCTCGAAGGCTGTTTCGTTAAATATGACAACACGAC 477
Query 487 GTTCCTCGGTGTTGAGGATAAGACGGTGGTGGTTCGACGTTGTGGACCACCGGTTGGTTA 546
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 478 GTTCCTCGGTGTGGAAGATAAGACGGTGGTGGTTCGCCGTTGTGGACCACCGGTTGGTTA 537
Query 547 TAACTCGGACGAGATGACTCGTAGAGACTCGGTGGTGGGTTCTTTAGCGGCGAGTAGCGG 606
||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| |||||
Sbjct 538 TAACTCGGACGAGTTGAATCGTAGAGACTCGGTGGTGGGTTATTTAGCGGCGAGCAGCGG 597
Query 607 TGGTTCATACAGAGTAGGAGTGTCGGGGGAA-CTGCAAGGTGTGGCGCAGTGCACCGGAG 665
|||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct 598 TGGTTCATACAGAGTAGGAGTGTC-AGGGAATTTACAAGGTGTGGCGCAGTGCACCGGAG 656
Query 666 ATCTTAGTGCGACTGAGTGTCAAGACTGTTTGATGGAAGCGATCGGACGGCTGAGAACGG 725
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 657 ATCTCAGTGCGACCGAGTGTCAAGACTGTTTGATGGAAGCGATCGGACGGCTGAGATCGG 716
Query 726 ATTGCGGAGGAGCTGCTTGGGGTGACGTGTACTTAGCAAAGTGCTACGCGCGTTACTCTG 785
|||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 717 ATTGTGGAGGAGCTGCTTGGGGTGACGTGTACTTAGCCAAGTGCTACGCGCTTTACTCTG 776
Query 786 CGCGTGGAGGTCACTCTAGAGCCAACGGCTATGGTGGGAATCGTAATAACAATGATGACG 845
|||||||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||
Sbjct 777 CGCGTGGAGGACACTCTAGAGCCAACGGCTACGGTGGGAGTCG---TAACAATGATGACG 833
Query 846 ATGAGATAGAGAAAACACTTGCAATCATAGTTGGCTTAATTGCTGGAGTTACGTTACTCG 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 ATGAGATAGAGAAAACACTTGCAATCATAGTTGGCTTAATTGCTGGAGTTACGTTACTCG 893
Query 906 TCGTATTTCTCTCTTTTATGGCAAAATCGTGCGAGAGAGGTAAAGGTGGGAAGTAAATAA 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TCGTATTTCTCTCTTTTATGGCAAAATCGTGCGAGAGAGGTAAAGGTGGGAAGTAAATAA 953
Query 966 CGTTATGGGACTTTTGACTTGTATCATCAATTTATGGTTTTAAAAAAGAATCAAATGCGT 1025
||||||||| |||||| |||||||||||||| |||| |||| ||| |||| ||||||||
Sbjct 954 CGTTATGGG-CTTTTGCCTTGTATCATCAATATATGTTTTTTAAA--GAATTAAATGCGT 1010
Query 1026 AAAGGAGAAAGAAAAGCGAAGAGATTCTTCATATTCTCCACTAAAATCCTAAAGGATGTT 1085
||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1011 AAAAGAGAAAGAAAAGCGAAGAGATTCTTCACATTCTCCACTATAATCCTAAAGGATGTT 1070
Query 1086 TCTTTTTTGACCCACTTTAATTGAAGTTTTACTATTTTTCAAATGTATAGAAAACTCACG 1145
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1071 TCTTTTTTGACCCACTTTAATTTAAGTTTTACTATTTTTCAAATGTATAGAAAACTCTCG 1130
Query 1146 CCGTTTAGATTTGTGATCGTATCTTTACGTAAGAACATTTAAAAGTGGCGCATATGCAAT 1205
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1131 CCGTTTAGATTTGTGATCGTCTCTTTACGTAAGAACATTTAAAAGTGGCGCATATGCAAT 1190
Query 1206 TTAT 1209
||||
Sbjct 1191 TTAT 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49788529602
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5