BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G01670.1

Length=1211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935888 jgi|Araly1|935888|scaffold_500079.1                        950    0.0  
  Ahg911762 jgi|Araly1|911762|Al_scaffold_0001_2016                   95.3    9e-19


> Ahg935888 jgi|Araly1|935888|scaffold_500079.1
Length=590

 Score =  950 bits (514),  Expect = 0.0
 Identities = 544/559 (97%), Gaps = 0/559 (0%)
 Strand=Plus/Plus

Query  275  CTaaaaaaaaTGGGTGTTGAGAAAATGGTGTGTTTAGCTTCTCGTACGGGTCGTCAGTTT  334
            |||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  13   CTAAGAAAAATGGGTGTTGAGAAAATGGTGTGTTTGGCTTCTCGCACGGGTCGTCAGTTT  72

Query  335  CAGAGATACAACAAAGGTCGTCGTCAAGTCGTTGGATGTGTTCCTTACAGATTCAAGCTA  394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73   CAGAGATACAACAAAGGTCGTCGTCAAGTCGTTGGATGTGTTCCTTACAGATTCAAGCTA  132

Query  395  TCTAATGATGGTAAAATAAGTGATGAAGTAGAAGTTCTTGTTATCTCTTCCCAAAAAGGC  454
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  133  TCTAATGATGGTAAAATCAGTGATGAAGTAGAAGTTCTTGTTATCTCTTCCCAAAAAGGT  192

Query  455  CACGCCTTAATGTTCCCCAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCA  514
            |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| || 
Sbjct  193  CACGCCTTGATGTTCCCTAAGGGTGGATGGGAGCTTGATGAATCTGTAGAAGAAGCAGCT  252

Query  515  TCAAGAGAATGTCTTGAAGAAGCTGGAGTTCTTGGCAACGTTGAGCACCAACTTGGAAAA  574
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  253  TCAAGAGAATGTCTTGAAGAAGCTGGAGTTCTTGGCAACGTTGAGCACCAACTTGGAAAA  312

Query  575  TGGGATTTTTTAAGCAAAAGCAGAGGAACATACTATGAAGGACTAATGTTCCCTATGCTT  634
            |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct  313  TGGGATTTTTTAAGCAAAAGCAGAGGAACATACTATGAAGGTTTAATGTTCCCTATGCTT  372

Query  635  GTTACAGAACAACTTGAGCTTTGGCCTGAACAACATGTTAGGCAAAGAATCTGGATGAAT  694
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  373  GTTACAGAACAACTTGAGCTTTGGCCTGAACAACATGTTAGGCAAAGAATTTGGATGAAT  432

Query  695  GTAACCGAAGCAAGAGAAGCTTGTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTG  754
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  433  GTAACCGAAGCAAGAGAAGCTTGTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTG  492

Query  755  GTTGAGAGACTTTCATCACCAATGAATCAACCAAAGGAAGAGAAGACTATGTCAATCTCT  814
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  493  GTTGAGAGACTTTCATCACCAATGAATCAACCAAAGGAAGAGAAGACTATTTCAATATCT  552

Query  815  ATTGAAACAATGTGTTGAT  833
            |||||||||||||||||||
Sbjct  553  ATTGAAACAATGTGTTGAT  571


> Ahg911762 jgi|Araly1|911762|Al_scaffold_0001_2016
Length=369

 Score = 95.3 bits (51),  Expect = 9e-19
 Identities = 68/76 (89%), Gaps = 2/76 (3%)
 Strand=Plus/Plus

Query  701  GAAGCAAGAGAAGCTTGTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGAG  760
            ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||  ||
Sbjct  241  GAAGCAAGAGAAGCTTGTAGAGATTGGTGGATGAAGGAAGCTTTAGATGTTTTAGTCCAG  300

Query  761  AGACTTTCAT-CACCA  775
            || |||| || |||||
Sbjct  301  AGGCTTT-ATTCACCA  315



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45213779562


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5