BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01690.2
Length=2983
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484085 jgi|Araly1|484085|fgenesh2_kg.5__77__AT2G01690.2 4366 0.0
> Ahg484085 jgi|Araly1|484085|fgenesh2_kg.5__77__AT2G01690.2
Length=2841
Score = 4366 bits (2364), Expect = 0.0
Identities = 2608/2718 (96%), Gaps = 47/2718 (2%)
Strand=Plus/Plus
Query 255 GATTTTGACTCCGAGAGAAGGTTTGATTTTCGGTGGATTTCATCTGACAGACATGTCAGA 314
||||||| ||||||||||| |||| |||| |||||||||||||||||||||||||||||
Sbjct 158 GATTTTGGTTCCGAGAGAAGTTTTGCTTTTTGGTGGATTTCATCTGACAGACATGTCAGA 217
Query 315 CGCTCTTTCTGCGATTCCGGCCGCAGTTCATCGCAATCTCTCCGATAAACTCTATGAGAA 374
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 218 CGCTCTTTCTGCGATTCCGGCCGCCGTTCATCGCAATCTCTCCGATAAACTCTATGAGAA 277
Query 375 GCGCAAAAATGCTGCGCTTGAGCTTGAGAATATTGTGAAGAATCTAACTTCTTCGGGTGA 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 GCGCAAAAATGCTGCGCTTGAGCTTGAGAATATTGTGAAGAATCTAACTTCTTCGGGTGA 337
Query 435 TCATGACAAGATCTCGAAAGTCATTGAGATGTTGATTAAGGAATTTGCCAAATCTCCTCA 494
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 338 TCATGACAAGATCTCGAAAGTCATTGAGATGTTGATTAAGGAATTTGCCAAATCCCCTCA 397
Query 495 AGCTAATCATCGGAAGGGTGGTCTAATTGGCTTAGCTGCTGTAACTGTTGGTTTGTCTAC 554
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 398 AGCTAATCATCGAAAGGGTGGTCTAATTGGCTTAGCTGCTGTAACAGTTGGTTTGTCTAC 457
Query 555 AGAAGCTGCTCAATATCTTGAGCAAATAGTGCCACCTGTGATTAATTCCTTTTCTGATCA 614
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 AGAAGCTGCACAATATCTTGAGCAAATAGTGCCACCTGTGATTAATTCCTTTTCTGATCA 517
Query 615 AGATAGCCGAGTTCGGTACTATGCATGTGAAGCTCTCTATAACATTGCAAAGGTTGTGCG 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 AGATAGCCGAGTTCGGTACTATGCATGTGAAGCTCTCTATAACATTGCAAAGGTTGTGCG 577
Query 675 AGGCGATTTCATTATTTTCTTCAATAAGATATTTGATGCCTTATGCAAACTCTCAGCAGA 734
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 578 AGGCGATTTCATTATTTTCTTCAATAAGATTTTTGATGCCTTATGCAAACTCTCAGCAGA 637
Query 735 TTCTGATGCCAATGTCCAAAGTGCTGCTCATCTTTTGGATCGCCTTGTTAAGCAGGATAT 794
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 638 TTCTGATGCCAATGTCCAAAGTGCTGCTCATCTTTTAGATCGCCTTGTTAAGCAGGATAT 697
Query 795 TGTGACGGAAAGTGATCAGTTCAGTATTGAGGAATTCATACCTCTTTTAAAAGAGCGAAT 854
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 698 TGTGACGGAAAGCGATCAGTTCAGTATTGAGGAATTCATACCTCTTTTAAAAGAGCGCAT 757
Query 855 GAACGTTCTCAACCCTTACGTCCGGCAATTTCTGGTTGGATGGATCACTGTTCTTGATAG 914
||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 758 GAACGTTCTAAACCCTTATGTTCGGCAATTTCTGGTTGGATGGATCACCGTTCTTGATAG 817
Query 915 TGTTCCAGACATTGACATGCTTGGGTTTCTGCCAGACTTTCTCGATGGGTTATTCAATAT 974
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 818 TGTTCCAGACATTGATATGCTTGGGTTTTTGCCAGACTTTCTCGATGGGTTATTCAATAT 877
Query 975 GTTGAGCGACTCTAGTCATGAAA-TACGACAGCAAGCTGATTCAGCTCTTTCAGAGTTTC 1033
||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||
Sbjct 878 GTTGAGCGACTCTAGTCATGAAATTA-GACAGCAGGCTGATTCAGCTCTTTCAGAGTTTC 936
Query 1034 TTCAAGAGATAAAAAATTCACCATCTGTAGATTATGGTCGCATGGCTGAAATACTGGTGC 1093
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 TTCAAGAAATAAAAAATTCACCATCTGTAGATTATGGTCGCATGGCTGAAATACTGGTGC 996
Query 1094 AGAGGGCTGCTTCTCCTGATGAATTCACTCGATTAACAGCCATCACGTGGATAAACGAGT 1153
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 997 AGAGGGCTGCTTCTCCTGATGAATTCACTCGATTAACAGCCATTACGTGGATAAACGAGT 1056
Query 1154 TCGTAAAACTTGGGGGAGACCAGCTCGTGCGTTATTATGCTGACATTCTTGGGGCTATCT 1213
| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1057 TTGTAAAACTTGGGGGAGACCAGCTTGTGCGTTATTATGCTGATATTCTTGGGGCTATCT 1116
Query 1214 TGCCTTGCATATCTGACAAAGAAGAGAAAATCAGGGTGGTTGCTCGTGAAACCAATGAAG 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 TGCCTTGCATATCTGACAAAGAAGAGAAAATCAGGGTGGTTGCTCGTGAAACCAATGAAG 1176
Query 1274 AACTTCGTTCAATCCATGTTGAACCCTCAGATGGTTTTGATGTTGGCGCAATTCTCTCTG 1333
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1177 AACTTCGTTCAATCCATGTTGAACCCTCAGATGGTTTTGACGTTGGCGCAATTCTCTCTG 1236
Query 1334 TTGCAAGGAGGCAGCTATCAAGTGAGTTTGAGGCTACTCGGATTGAAGCATTGAATTGGA 1393
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1237 TTGCAAGGAGGCAGCTATCAAGTGATTTTGAGGCTACTCGGATTGAAGCATTGAATTGGA 1296
Query 1394 TATCAACACTTTTAAACAAGCATCGTACTGAGGTCTTGTGCTTCCTGAATGACATATTTG 1453
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 TATCAACACTTTTGAACAAGCATCGTACTGAGGTCTTGTGCTTCCTGAATGACATATTTG 1356
Query 1454 ACACCCTTCTAAAAGCACTATCTGATTCTTCTGATGACGTGGTGCTCTTGGTTCTGGAGG 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 ACACCCTTCTAAAAGCACTATCTGATTCTTCTGATGACGTGGTGCTCTTGGTTCTGGAGG 1416
Query 1514 TTCATGCTGGTGTAGCAAAAGATCCACAACACTTTCGCCAGCTCATCGTATTTCTTGTCC 1573
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1417 TTCATGCTGGTGTAGCAAAAGATCCACAACACTTTCGCCAGCTCATTGTATTTCTAGTCC 1476
Query 1574 ACAATTTCCGAGCTGATAATTCTCTTTTGGAAAGGCGCGGTGCCCTTATTGTCCGAAGAA 1633
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1477 ACAATTTCCGAGCTGATAATTCTCTTTTGGAAAGGCGTGGTGCCCTTATCGTCCGAAGAA 1536
Query 1634 TGTGTGTACTTTTGGATGCCGAAAGAGTCTACCGAGAGCTCTCTACAATTCTTGAGGGAG 1693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1537 TGTGTGTACTTTTGGATGCCGAAAGAGTCTACCGAGAGCTCTCTACAATTCTTGAGGGAG 1596
Query 1694 AAGATAATCTTGACTTTGCTTCTACCATGGTTCAGGCATTGAATTTGATTTTGCTTACTT 1753
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1597 AAGATAATCTTGACTTTGCTTCTACCATGGTTCAGGCATTGAATTTGATTTTGCTTACAT 1656
Query 1754 CCCCGGAGTTATCGAAACTGAGAGAACTATTAAAAGGTTCACTCGTCAATCGCGAAGGGA 1813
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1657 CCCCGGAGTTATCGAAACTAAGAGATCTATTAAAAGGTTCACTCGTCAATCGCGAAGGGA 1716
Query 1814 AAGAACTTTTCGTTGCCTTGTATACTTCATGGTGCCATTCACCCATGGCAATTATAAGCC 1873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 AAGAACTTTTCGTTGCCTTGTATACTTCATGGTGCCATTCACCCATGGCAATTATAAGCC 1776
Query 1874 TCTGCTTATTAGCTCAGGCTTACCAGCATGCGAGTGTCGTGATTCAATCATTGGTAGAAG 1933
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1777 TCTGCTTATTAGCTCAGGCTTACCAGCATGCGAGTGTTGTGATTCAATCATTGGTAGAAG 1836
Query 1934 AAGACATTAACGTCAAATTTCTAGTACAGCTTGATAAATTGATCCGGCTTCTGGAAACTC 1993
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1837 AAGACATTAACGTCAAATTTCTAGTACAGCTTGATAAATTGATCCGGCTTCTTGAAACTC 1896
Query 1994 CAATCTTTACTTACCTTAGATTGCAGCTTCTGGAACCAGGAAGGTACACATGGTTGCTGA 2053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1897 CAATCTTTACTTACCTTAGATTGCAGCTTCTGGAACCAGGAAGGTACACATGGTTGCTGA 1956
Query 2054 AAACACTTTATGGTCTTCTTATGTTACTTCCTCAGCAAAGTGCGGCGTTCAAGATACTTA 2113
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1957 AAACACTTTATGGTCTTCTAATGTTACTTCCTCAGCAAAGTGCGGCGTTCAAGATACTTA 2016
Query 2114 GGACAAGACTCAAAACTGTGCCAACGTACTCATTCAGTACTGGAAACCAAATAGGCAGAG 2173
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 2017 GGACAAGACTCAAAACTGTACCAACGTACTCCTTCAGTACTGGAAACCAAATAGGCAGAG 2076
Query 2174 CAACTTCAGGAGTTCCTTTCTCTCAGTATAAGCATCAAAACGAGGACGGTGACTTAGAAG 2233
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2077 CAACTTCAGGAGTTCCTTTCTCTCAGTATAAGCATCAAAACGAGGATGGTGACTTAGAAG 2136
Query 2234 ACGATAACATCAACAGTTCTCACCAAGGAATCAATTTTGCTGTGCGGCTACAACAGTTCG 2293
| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 2137 AGGATAATATCAACAGTTCTCACCAAGGAATCAATTTTGCTGCGCGGCTACAACAGTTTG 2196
Query 2294 AAAACGTACAGAATCTACATCGTGGCCAGGCAAGGACTAGAGTGAACTACTCATATCACT 2353
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2197 AGAACGTACAAAATCTACATCGTGGCCAGGCAAGGACTAGAGTGAACTACTCATATCACA 2256
Query 2354 CTTCCTCTTCTTCTACATCAAAGGAGGTGAGGAGATCTGAAGaacaacaacagcagcagc 2413
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2257 CTTCCTCTTCTTCTACATCAAAGGAGGTGAGGAGATCTGAAGAACAACAACAGCAGCAAC 2316
Query 2414 agcaacaacaacagcaacaacaacaacaacaacGACCACCACCTTCTTCGACATCATCAT 2473
| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2317 AACAACAACAACAACAACAACAGCAACAACAACGACCACCACCTTCTTCGACATCATCAT 2376
Query 2474 CAGTTGCAGATAACAATAGACCTCCATCAAGAACTTCAAGAAAAGGCCCTGGTCAATTAC 2533
|||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2377 CAGTTGCAGACAACAATCGACCTCCATCAAGATCTTCAAGAAAAGGCCCTGGTCAATTAC 2436
Query 2534 AGCTTTAACCTACCTGGTAATCA-T-A-AA-TAATAAATAATATTCCATCCCCGACAATC 2589
||||||||||||||||||||||| | | || ||||||||||||| | |||||||||||||
Sbjct 2437 AGCTTTAACCTACCTGGTAATCAATCATAAATAATAAATAATAT-CAATCCCCGACAATC 2495
Query 2590 ATCATC-T-T-CATCTTCTTTGTGTGGACACCACCGATCCCTTTTGTCTCCTGTAAAATT 2646
|||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2496 ATCATCATCTTCTTCTTCTTTGTGTGGACACCACCGATCCCTTTTGTCTCCTGTAAAATT 2555
Query 2647 GTATATCTCTCTTTTTTAGTAACTCTTCAAGTTTCGACGGAACTTGTGGAAAAGCTACGG 2706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2556 GTATATCTCTCTTTTTTAGTAACTCTTCAAGTTTCGACGGAACTTGTGGAAAAGCTACGG 2615
Query 2707 TCGTGTCCATCATCTCTTTCTCTCTGTCGGGttttttttATTT-----ACGAGAGATTCT 2761
||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||
Sbjct 2616 TCGTGTCCATCCTCTCT--CTCTCTGTCGGGTTTTTTTTTTTTTTTTTACGAGAGATTCT 2673
Query 2762 TCTTCAGTCCCTCAGTCTACCTTTATAttgtttttttgggggtttctcgtttctttgaat 2821
||| ||||||||||||||||||| ||||| ||||| ||| |||| ||||||| ||||
Sbjct 2674 TCTCCAGTCCCTCAGTCTACCTT-ATATT-TTTTT--GGG--TTTC--GTTTCTT-GAAT 2724
Query 2822 ttgtttcattgtttggagctttttatatttttACCTTATGTGGAGATGTAAGAAAAAGAA 2881
||||||||||||||||||||||| | | ||||||||||||||
Sbjct 2725 TTGTTTCATTGTTTGGAGCTTTT----------------G---A--TGTAAGAAAAAGAA 2763
Query 2882 GTGATCATGTGGTTTTGTGTTGtttttttATAACTGGAAAACCACATGAGTTTGTAGAGG 2941
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2764 GTGATCATGTGGTTTTGTGTTGTTTTTTTATAACTGGAAAACCACATGAGTTTGTAGAGA 2823
Query 2942 TCACTTATTGGATATTTT 2959
| ||||||||||||||||
Sbjct 2824 TGACTTATTGGATATTTT 2841
Score = 222 bits (120), Expect = 1e-56
Identities = 161/178 (90%), Gaps = 14/178 (8%)
Strand=Plus/Plus
Query 57 aaaaaaaaaaGATCAGAAATTA-GTTTGTGCAGAAATCGAATTGGAGAAACCGAGTAACT 115
|||||||||| |||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAAAAAATCAGAAA-TATGTTTATGCAGAAATCGAATTGGAGAAACCGAGTAACT 59
Query 116 ATGGTAGCCACAGATGAGTTCATCGTTTTTGACCAGATCTGATTGTTTTCGTCTTTGC-C 174
||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 60 --GGTAGCCACAGATGAGTTCGTCGTTTTTGACCAGATCTGATTGTTTTCGTCTTT-CAC 116
Query 175 GTTGAAATAATCCTCCGC-TCCTTCTTCTCATCGATTTCTCCGATCGCGATTTTGGTT 231
|||||| ||||||||||| ||||||||||| || || | | ||||||||||||||||
Sbjct 117 GTTGAA-TAATCCTCCGCCTCCTTCTTCTC-TC-AT--C-C-GATCGCGATTTTGGTT 167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112632854465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5