BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01710.1
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484087 jgi|Araly1|484087|fgenesh2_kg.5__79__AT2G01710.1 1347 0.0
> Ahg484087 jgi|Araly1|484087|fgenesh2_kg.5__79__AT2G01710.1
Length=1098
Score = 1347 bits (729), Expect = 0.0
Identities = 955/1059 (90%), Gaps = 35/1059 (3%)
Strand=Plus/Plus
Query 1 GACCATTTTTACACACAGCCAATCAGAGCCTTGTTTCATCGTCTCTTGTC---GAGGCGA 57
|||||| |||||||| ||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1 GACCATATTTACACAGAGCCAATCAGAGCCTTGTTTCATCG--TCTTGTCGAGGAGGCGA 58
Query 58 TAATATTTAGATCTGCTCACCATTTCTCCGCCATCGCCGACGGAAGAAGAAAGATGGGAG 117
||||| |||||||||||||||||||||||||||||| | | | ||||||||||
Sbjct 59 TAATA-TTAGATCTGCTCACCATTTCTCCGCCATCG-C--C-------G-AAGATGGGAG 106
Query 118 ACAACAACCCTAACCGATCAGAAGCAGAACGTCTTCTCGGAATCGCGGAGAAGCTTCTCG 177
||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||||| |
Sbjct 107 ACAACAACCCTAACCGACCAGAAGCCGAGCGTCTTCTCGGAATCGCAGAGAAGCTTCTGG 166
Query 178 AGTCACGAGATCTAAACGGTTCAAAAGAGTTTGCAATCTTAGCTCAAGAGACAGAGCCAC 237
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 167 AGTCACGAGATCTCAACGGTTCAAAAGAGTTTGCAATCTTAGCTCAAGAAACAGAGCCAC 226
Query 238 TCCTCGAAGGCACCGATCAAATCCTCGCCGTCGTCGATGTCTTACTCTCATCAGCAC-CA 296
||||||||||||||||||||||||||||||||||||||||| | |||||||| | | ||
Sbjct 227 TCCTCGAAGGCACCGATCAAATCCTCGCCGTCGTCGATGTCCTCCTCTCATCTTC-CTCA 285
Query 297 GAGAATCGTATCAAAAACCAACCAAACTGGTACAAAATCCTTCAGATCGAAGATCTAACT 356
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 286 GAGAATCGCATCAAAAACCAACCAAACTGGTACAAAATCCTTCAGATCGAAGATCCAAAT 345
Query 357 GAATCATCAACAGACAACGATCTAATCAAGAAACAATACCGTCGTCTTGCTCTTCTTCTC 416
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 346 GAATCATCAACAGACAACGATCTAATCAAGAAACAATACCGTCGTCTGGCTCTTCTTCTC 405
Query 417 CACCCTGACAAAAACCGTTTCCCTTTCGCCGATCAAGCTTTCAGATTCGTGCTTGATGCA 476
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 CACCCAGACAAAAACCGCTTCCCTTTCGCCGATCAAGCTTTCAGATTCGTGCTTGATGCA 465
Query 477 TGGGAAGTTCTATCAACACCTACGAAGAAATCTCAATTCGATGGAGATTTGAATCTCATC 536
||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||
Sbjct 466 TGGGAAGTTCTATCAACACCTTCAAAGAAATCTCAATTCGATCGAGATTTGAATCTCATC 525
Query 537 TTCACTAAAGTAAATCTCAACACTCAGAAATCGAAGAAGAAAACAACAACGAATGAGAAG 596
||||| |||||| ||||||| ||||| ||||||||||||||| ||||||| |||||||||
Sbjct 526 TTCACAAAAGTAGATCTCAATACTCAAAAATCGAAGAAGAAATCAACAACCAATGAGAAG 585
Query 597 ATGTCTACGTTTTGGACGGCGTGTCCGTACTGTTACAGTCTTCATGAGTATCCTAGGGTT 656
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 586 ATGGCTACGTTTTGGACGGCGTGTCCGTATTGTTACAGTCTTCATGAGTATCCTAGGGTT 645
Query 657 TATCAAGAGTATTGTATTAGATGTCAAAACTGTCAAAGAGCGTTTCACGCTGCGAGTATT 716
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 646 TATCATGAGTATTGTATCAGATGTCAAAACTGTCAAAGAGCGTTTCACGCGGCGAGTATT 705
Query 717 CCTCAGTTGCCTCCGTTGATACCTGGTAAAGATGAGTATTATTGTTGTTGGGGttttttt 776
||||| |||||||||||| | ||||| |||||||||||||||||||||||||| ||||||
Sbjct 706 CCTCAATTGCCTCCGTTGGTTCCTGGAAAAGATGAGTATTATTGTTGTTGGGGGTTTTTT 765
Query 777 CCGATGGGGTTTGTTGGTGGTAAAGGAGGAGAAGCTGCCATTGCTAATGGAGTAGATGCA 836
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 766 CCGATGGGATTTGTTGGTGGTAAAGGAGGAGAAGCCGCCATTGCTAACGGAGTTGATGCA 825
Query 837 GCTAAGTTCCCTAATTGGATGCCTCCGGTTTTCTCATCCGGCGGCGTTGCAGCTCCTCCA 896
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 826 GCCAAATTCCCTAATTGGATGCCGCCGGTTTTCTCATCCGGCGGCGTTGCAGCTCCTCCA 885
Query 897 AGTGGTAATGGTGTTAGTTTTGATGGATGGTCAGGTGGTGCGGCGAAGAGAGATAATGAG 956
|||| |||||||| | | | || ||| || | || | || | | | || |
Sbjct 886 AGTGTTAATGGTGGCGGAT---ACGG--GGTTAGCTT-TGATG-GATG-GTCAGG-TG-G 935
Query 957 -GCTGTGAGGAGTA-ATAATGGTGTTGGAGTTAATTCAGATGGAACACCGAAGAAGAGAG 1014
|| | || ||| | | || | | | |||||||||| ||||||||| |||||||||||||
Sbjct 936 TGCAGCGAAGAG-AGACAACG-T-T-GGAGTTAATTTAGATGGAACGCCGAAGAAGAGAG 991
Query 1015 GAAGAGGAAGGCCGAAGAAGAATCCGGTTTAGTGATCTC 1053
||||||||||||| |||||||||||||||||||||||||
Sbjct 992 GAAGAGGAAGGCCCAAGAAGAATCCGGTTTAGTGATCTC 1030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47386785831
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5