BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01720.1
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484088 jgi|Araly1|484088|fgenesh2_kg.5__80__AT2G01720.1 2604 0.0
> Ahg484088 jgi|Araly1|484088|fgenesh2_kg.5__80__AT2G01720.1
Length=1713
Score = 2604 bits (1410), Expect = 0.0
Identities = 1622/1723 (94%), Gaps = 19/1723 (1%)
Strand=Plus/Plus
Query 6 CTAATCCCTAAATCAAGAGAGAAGTGAGAGACACTGAGAC-TTTGTAGTTGACCGGATCA 64
||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1 CTAATCCCTAAATCACGAGAGAAGTGAGAGAGACTGAGACTTTTGTAGTTGACCGGATCA 60
Query 65 TTCTCACTTCGCCGGCCGACGTTCTTCCTTCCGCCGTCGGTATCTATATTTACGATCCAC 124
||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 61 TTCTCACTTCGCCGGCCGACGTTCTTCCTTCCGCCGTCGGTATCTGTCTGTACGATCCAC 120
Query 125 GATCTCTCTTGCTGTTTCTGTCTTCATCGTGACGAAAATGGCTGCTCGTATCGGGATCTT 184
||||||||| || | ||| || ||||||||||||||||||||||||||||||||| |||
Sbjct 121 GATCTCTCTCACTCTATCTTTCCTCATCGTGACGAAAATGGCTGCTCGTATCGGGAACTT 180
Query 185 CTCCGTCTTCGTAGCTGTATTGTTATCTATTTCTGCATTTTCCTCAGCTCAGGATCTCCA 244
|| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 181 CTTCGTCTTCGTAGCTGTATTCTTATCTATCTCTGCATTTTCCTCAGCTCAGGATCTCCA 240
Query 245 GATCGTAAATGCCGAGCGAAGGATTGATTTAAGCTCACATATCGTGAAGGCCTTCTTGAC 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATCGTAAATGCCGAGCGAAGGATTGATTTAAGCTCACATATCGTGAAGGCCTTCTTGAC 300
Query 305 TCTCAAGGTTGAAAATATTGGGAAAGATCCTGCTGCAGAAATGCTTCTTGCTTTCCCACC 364
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 TCTCAAGGTCGAAAATATTGGGAAAGATCCTGCTCCAGAAATGCTTCTTGCTTTCCCACC 360
Query 365 TACCCAGATCAAGAATTTGGCTATGGTACAAGCCCTGGCAACTACTGGCAAGAAGAAGAA 424
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 TACCCAGATCAAGAATTTGGCTATGGTACAAGCCCTGGCAATTACTGGCAAGAAGAAGAA 420
Query 425 GAAAACTTATTTGCCATTAGATGTAAAACCAACTGAACAACCTGATGCACCAAATGACAC 484
|||||| ||||||||| ||||||| ||||||||||||| | |||||||||||||||||||
Sbjct 421 GAAAACCTATTTGCCACTAGATGTTAAACCAACTGAACTAGCTGATGCACCAAATGACAC 480
Query 485 TGGATACTACCGTGTTACGTTTATTAGCCCCTTAGGTCCGGGTGAAACTGTTTCACTTGA 544
||||| ||||||||||| |||| ||| ||||||||| |||||||||||||||||||||||
Sbjct 481 TGGATTCTACCGTGTTAAGTTTGTTACCCCCTTAGGCCCGGGTGAAACTGTTTCACTTGA 540
Query 545 GGTGCTTTACATATTGACTCATTCCTTGGAACCTTTCCCAGTGGAGATAACCCAGTCAGA 604
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 541 GGTGCTTTACATATTGACTCATTCTTTGGAGCCTTTCCCAGTGGAGATAACCCAGTCAGA 600
Query 605 ATCTCAATTGGTTTACTATCATGATAGTGCAGTGATATTGTCACCGTATCATGTTAAGCA 664
|||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct 601 ATCTCAGTTGGTTTACTACCATGATAGTGCAGTGATATTGTCACCATATCATATTAAGCA 660
Query 665 ACAGACAACTTTTATTAAGACTCCTAGTACTAGAGTAGAGTCGTTCACTAGCATTGAACC 724
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 ACAGACAACTTTTGTTAAGACTCCTAGTACTAGAGTAGAGTCGTTCACTAGCATCGAACC 720
Query 725 TGCTAACCGGGCTGGCAAAGAGATCAAATATGGACCATATGAAAATCGTGCTTCATACTC 784
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 721 TGCTAACCGGGCTGGCAAAGAGATCAAATATGGACCATATGAGAATCGTGCTTCATACTC 780
Query 785 TTACACACCTGTCATCATTCACTTCGAGAATAACAGTCCATTTGCTGTTGTTGAGGAGCT 844
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 781 TTACACACCTGTCATCATTCACTTCGAGAATAACAGTCCGTTTGCCGTTGTTGAGGAGCT 840
Query 845 TGTGCGTGAAATTGAGATTTCACACTGGGGTAGCCTTCAGATTACAGAAAATTATAGGTT 904
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 841 TGTGCGTGAAATTGAGATTTCACACTGGGGTAGCCTTCAGATAACAGAAAATTATAGGTT 900
Query 905 GACTCATGGGGGAGCGAGGCATAAGGGTGTTTTCTCAAGGGTTGATTATCAATCTAAACG 964
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 901 GACTCATGGGGGAGCGCGGCATAAGGGTGTTTTCTCGAGGGTTGATTATCAATCTAAACG 960
Query 965 ATCGGTCAGTGGTGCATCCTCTTTCAATGCGCTCCTTGCAGTCCTACCTCCCAGAGTGAA 1024
|| ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 961 GTCCGTCAGTGGTGCATCCTCTTTCAATGCGCTACTTGCAGTACTGCCTCCCAGAGTGAA 1020
Query 1025 CTCTGTCTACTACAGGGATGAGATAGGAAACATCTCTACTTCACATTTGCGTACAGGCTT 1084
|||||| |||||||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 1021 CTCTGTGTACTACAGGGATAACATAGGAAACATCTCAACTTCACATTTGCGTACAGGCTT 1080
Query 1085 TAGAAAGTCAGAACTTGAATTTGAACCCCGCTACCCATTATTTGGAGGGTGGAGTGCAAC 1144
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1081 TAGAAAGTCAGAACTTGAATTTGAACCGCGGTACCCATTATTTGGAGGGTGGAGTGCAAC 1140
Query 1145 TTTTATCATCGGCTATAGAGTTCCATTGGAAGACTATCTCTTTGAAGCATCTGATGGCAG 1204
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1141 TTTTGTCATCGGCTATAGAGTTCCATTGGAAGATTATCTCTTTGAAGCATCTGATGGCCG 1200
Query 1205 ACGTTACTTGAACTTTACCTTTGGGTGCCCGCTCGTCGAAACTATTGTTAACAAGTTGAC 1264
|||||||||||||||||||||||||||||| || ||||||||||| || |||||||||||
Sbjct 1201 ACGTTACTTGAACTTTACCTTTGGGTGCCCCCTTGTCGAAACTATAGTGAACAAGTTGAC 1260
Query 1265 TATCAAAGTCGTGCTTCCTGAAGGATCAAAGGACCCTTCTGCTGTTTTGCCCTTTACAGT 1324
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TCTCAAAGTTGTGCTTCCTGAAGGATCAAAGGACCCTTCTGCTGTTTTGCCCTTTACAGT 1320
Query 1325 CAATCAAGAGTT-GCAGGTCAAATACTCATACCTTGACATTGTGGGAAGAACCGTGGTTG 1383
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 AAATCAAGAGTTAG-AGGTCAAATACTCATACCTTGACATTGTGGGAAGAACCGTGGTTG 1379
Query 1384 TGTTGCAAAAAGATAACGTAGTTCCCACTCACAACGTACCCTTCCAGGTGTACTATACAT 1443
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TGTTGCAAAAAGATAATGTAGTTCCCACTCACAACGTACCCTTCCAGGTGTACTATACAT 1439
Query 1444 TCAAACCAATATACATGCTAGCGGAACCATTCATGCTTGTATCGGCTTTCTTCTTAGTAT 1503
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TCAAACCAATATACATGCTTGCGGAACCATTCATGCTTGTATCGGCTTTCTTCTTAGTAT 1499
Query 1504 TTGTGGCTTCGCTTGCGTATGTACACATCGATCTCAATATCGTCAGGAAGTAGAAGTCTT 1563
||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1500 TTGTGACTTCGCTTGCGTATGTACACATTGATCTCAATATTGTCAGGAAGTAGAAGTCTT 1559
Query 1564 ATCAACAGTCCTTCGCTTTCACTTATAGACTCGTAAAAGAAAATACTTT-TGA-TCATCA 1621
|| || |||| || ||||||||||||||||||||||||||| ||||||| | | | | |
Sbjct 1560 ATGAAAAGTCATTTGCTTTCACTTATAGACTCGTAAAAGAAGATACTTTATTACTTTTGA 1619
Query 1622 CTTGAAGAACTAAACTTTGTAGGTGTTGCTGCTTTTAGTAGAGTTATATCTTTGACACT- 1680
| ||||||||||||||||||| |||||| |||| ||||| || |||||||||| ||
Sbjct 1620 -T-GAAGAACTAAACTTTGTAGTTGTTGC--CTTT-AGTAG--TTGTATCTTTGACGCTC 1672
Query 1681 ---ACTTTGCTCTCCAATCTT-GATTTTTCCTCAATTTTATTT 1719
||||| |||||||||||| ||||| |||||||||| |||
Sbjct 1673 TTTACTTTCCTCTCCAATCTTTGATTT--CCTCAATTTTGTTT 1713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64486784785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5