BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G01755.1

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484093 jgi|Araly1|484093|fgenesh2_kg.5__85__AT2G01755.1           678    0.0  


> Ahg484093 jgi|Araly1|484093|fgenesh2_kg.5__85__AT2G01755.1
Length=508

 Score =  678 bits (367),  Expect = 0.0
 Identities = 478/528 (91%), Gaps = 22/528 (4%)
 Strand=Plus/Plus

Query  4    ATATCAGAATGCTTATCACGCCGGCGAATTTATCCGGTGGCATAGCCGGATTATTCGTTT  63
            |||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct  1    ATATCACAATGCTTATCACGCCGGCGAGTTTATGCGGTGGCTTAGCCGGATTATTCGTTT  60

Query  64   TCGGACAGAAAGATCA-AATGACTAAAATACCCTCGCTCACAAACTCGTATAACTACCGG  122
            |||||||||||| | | |||||| ||||||||||| |||||||| ||| ||||||||| |
Sbjct  61   TCGGACAGAAAGCT-AGAATGACGAAAATACCCTCACTCACAAATTCGAATAACTACC-G  118

Query  123  AAA-AAACTTTTCACCGTCCCTCCAGTGGCGGAGAGAAGAAGAGCTTTGAAGATGTTCTG  181
            ||| |  ||||||| ||||||||| |||||     |  | |||     |||||  ||| |
Sbjct  119  AAACACCCTTTTCAGCGTCCCTCCGGTGGC-----G--G-AGA-----GAAGA--TTCCG  163

Query  182  GTGCGGTGCTCGGAGAAGGGTGAGAGACGAGGGAGGTGGTGAAGATGAAGATGAAATGTA  241
            ||||||||||||||||||||||||||| ||||||   |||||||||||||||||| ||||
Sbjct  164  GTGCGGTGCTCGGAGAAGGGTGAGAGATGAGGGA---GGTGAAGATGAAGATGAATTGTA  220

Query  242  TGGATACAACGAGGAAATGGCGATGTTGGAGATATATAGCCAGTCGTGTAGAGAAGAAGC  301
            ||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct  221  TGGATACAATGAGGAGATGGCGATGTTGGAGATATATAGCCAATCATGTAGAGAAGAAGC  280

Query  302  GCTTATAGTGACGGCCATTGTCGACGATGAAGAAGTGGAAGTTGTAATCTTTAAAGGAGT  361
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  281  GCTTATAGTGACGGCCATTGTCGACGATGAAGAAGTGGAAGTCGTAATCTTTAAAGGAGT  340

Query  362  GTCGTCGTGCTTGAGCGGAGAAACGGCGGTGGATCCGGCGAGGAGTGTGTTGCCGGAGAG  421
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  341  GTCGGCGTGCTTGAGCGGAGAAACGGCGGTGGATCCGGCGAGGAGTGTGTTGCCGGAGAG  400

Query  422  AGCAGTCATTACAAAGATTGATAGAGTGAGAGGTCCTTTTGATCCTTCACAGATTCATTA  481
            |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  401  AGCAGTGATTACAAAGATTGATAGAGTGAAAGGTCCTTTTGATCCTTCACAGATTCATTA  460

Query  482  TATTCAAAGGGACATCTCTTTTCAAGCCTTCAAGGAGACCAGACTCAA  529
             ||||||| |||||| |||||||||||||||||||| |||||||||||
Sbjct  461  CATTCAAAAGGACATATCTTTTCAAGCCTTCAAGGACACCAGACTCAA  508



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21519752196


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5