BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01760.1
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935902 jgi|Araly1|935902|scaffold_500093.1 1773 0.0
> Ahg935902 jgi|Araly1|935902|scaffold_500093.1
Length=1201
Score = 1773 bits (960), Expect = 0.0
Identities = 1130/1209 (93%), Gaps = 24/1209 (2%)
Strand=Plus/Plus
Query 54 CAATACTCACACCAAAGCTTAATGCCGATCAACGATCAGTTTCCTAGTGGGTTAAGAATA 113
||||| |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 CAATATTCACACGAAAGC-TAATGGCGATCAACGATCAGTTTCCTAGTGGGTTAAGAATT 59
Query 114 CTCGTTGTAGACGATGATACTTCATGCTTGTTCATTCTCGAGAAAATGCTTCTCCGTCTC 173
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 60 CTCCTTGTAGACGATGATACTTCATGCTTGTTCATTCTCGAGAAGATGCTTCTCCGTCTC 119
Query 174 ATGTACCAAGTTACAATTTGCTCACAAGCTGATGTTGCGTTAACCATTCTAAGAGAAAGA 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATGTACCAAGTTACAATTTGCTCACAAGCTGATGTTGCGTTAACCATTCTAAGAGAAAGA 179
Query 234 AAAGACAGTTTTGATTTGGTGCTAAGTGATGTTCATATGCCTGGTATGAATGGTTACAAT 293
|||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 180 AAAGACTGTTTTGATTTGGTTCTAAGTGATGTTCATATGCCTGGCATGAATGGTTACAAA 239
Query 294 CTTCTTCAACAAGTTGGTCTTCTTGAAATGGATCTTCCTGTCATTATGATGTCTGTTGAT 353
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 CTTCTTCAACAAGTTGGTCTTCTTGAATTGGATCTTCCTGTCATTATGATGTCTGTTGAT 299
Query 354 GGAAGAACAACTACAGTCATGACTGGAATCAACCATGGAGCTTGTGATTATCTAATCAAA 413
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 300 GGAAGAACAACTACAGTCATGACTGGAATCAACCATGGAGCTTGTGATTATCTTATTAAA 359
Query 414 CCTATTCGTCCTGAAGAGCTTAAGAACATTTGGCAACATGTTGTTAGAAGGAAATGTGTG 473
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 360 CCTATTCGTCCTGAAGAGCTTAAGAACATTTGGCAACGTGTTGTTCGAAGGAAATGTGTA 419
Query 474 ATGAAGAAAGAGCTTCGAAGTTCTCAAGCTTTAGAGGATAACAAGAACAGTGGTAGCCTC 533
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||
Sbjct 420 ATGAAGAAAGAGCTTCGAAATTCTCAAGCTTTGGAGGATAACAAGAACAGTGGTAGTCTA 479
Query 534 GAGACTGTTGTTGTTTCGGTTAGTGAATGCTCAGAGGAAAGTTTGATGAAATGTAGGAAT 593
||||| ||| || || ||| ||||||||||||||||| ||||||||||||| |||||||
Sbjct 480 GAGACGGTT-TT-TT-CGGCTAGTGAATGCTCAGAGGGAAGTTTGATGAAACGTAGGAAG 536
Query 594 aagaagaagaagaagaagagaagTGTTGATAGAGATGATAATGAAGATGATCTT---CTT 650
|||||||||||||||| | || ||||||||||||| |||||||| ||||||||| |||
Sbjct 537 AAGAAGAAGAAGAAGA-G-GA-GTGTTGATAGAGAAGATAATGAGGATGATCTTGATCTT 593
Query 651 CTTGATCCTGGAAACTCGAAGAAGTCACGCGTTGTTTGGTCTATTGAATTGCATCAACAA 710
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 CTTAATCCTGGAAACTCGAAGAAGTCACGCGTTGTTTGGTCTATTGAATTGCATCAACAA 653
Query 711 TTCGTTAATGCCGTAAACAAACTTGGAATTGACAAAGCTGTACCAAAGCGGATTCTCGAG 770
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 654 TTCGTTAATGCCGTTAACAAACTTGGAATTGATAAAGCTGTACCAAAGCGGATTCTCGAG 713
Query 771 TTGATGAATGTTCCTGGTTTAAGCAGAGAAAACGTGGCTAGTCATTTACAGAAGTTCCGA 830
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 714 TTGATGAATGTTCCTGGTTTAAGCAGAGAAAACGTGGCTAGTCATTTGCAGAAATTCCGA 773
Query 831 TTGTATTTGAAGAGATTAAGCGGTGAAGCTTCGCAGAGTAATGACTCTGAGTCTACCAAA 890
||||||||||| |||||||||||||| |||| |||| ||||||| | ||||||| ||||
Sbjct 774 ATGTATTTGAAGCGATTAAGCGGTGAAACTTCTCAGAATAATGACACGGAGTCTATCAAA 833
Query 891 AGATATGAAAACATTCAAGCTCTGGTTTCCTCAGGACAATTACATCCACAGACATTAGCT 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 AGATATGAAAACATTCAAGCTCTGGTTTCCTCAGGACAATTACATCCACAGACATTAGCT 893
Query 951 GCATTGTTTGGTCAACCAATAGACAATCATCACTCTGCTAGTTTTGGAGTTTGGATTCCT 1010
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GCATTGTATGGTCAACCAATAGACAATCATCACTCTGCTAGTTTTGGAGTTTGGATTCCT 953
Query 1011 AATGAC-A--ATCTTGGTAGATCTCAAAATGAACACTTCTCGGTTGATGTATCATCCGCT 1067
||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 954 AATGATGATCATCTTGGTAGATCTCAAAATGAACACTTTTCGGTTGATGTATCATCCGCT 1013
Query 1068 TCTAACCGTCCTGTTTCTGTGGCGGTTCATGGTCTATCTTCCTCAGCAAATTTCAGACAG 1127
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1014 TCTAACCGTCCTGTTTCTGTGGCGGTTCATGGTCTATCTTCCTCAGCAAATTACAGACTG 1073
Query 1128 AGAGGTGACGTTAACAACAACA--GA--A-----TCAGACAAGGGTATGGATCAAATGTC 1178
|||||||| ||||||||||||| || | ||| ||||||||||||||||| |||
Sbjct 1074 AGAGGTGATGTTAACAACAACACAGACCACAGAATCAAACAAGGGTATGGATCAATTGTT 1133
Query 1179 AATGAAGAATCTTGGATCTTGGAAAGATCTTCAAGACAAAGATAGTGACCAAT-ATGGAT 1237
||||||||||||||||||||||||||||||||||||||| |||| ||| || | ||| ||
Sbjct 1134 AATGAAGAATCTTGGATCTTGGAAAGATCTTCAAGACAACGATATTGAACA-TCATGAAT 1192
Query 1238 ACGCTTAAG 1246
|||||||
Sbjct 1193 TGGCTTAAG 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52526447855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5