BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01770.1
Length=769
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484095 jgi|Araly1|484095|fgenesh2_kg.5__87__AT2G01770.1 1249 0.0
> Ahg484095 jgi|Araly1|484095|fgenesh2_kg.5__87__AT2G01770.1
Length=763
Score = 1249 bits (676), Expect = 0.0
Identities = 734/763 (96%), Gaps = 0/763 (0%)
Strand=Plus/Plus
Query 7 ATCAACAATGTCGTCGGAGGAAGATAAGATTACAAGAATCTCTATCGAACCGGAGAAGCA 66
|||| |||||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATCATCAATGTCGCCGGAAGAAGACAAGATTACAAGAATCTCTATCGAACCGGAGAAGCA 60
Query 67 AACACTTCTCGATCATCACACCGAGAAACACTTCACCGCCGGAGAAATCGTACGTGACAT 126
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 ATCACTTCTCGATCATCACACCGAGAAACACTTCACCGCCGGAGAAATCGTCCGTGACAT 120
Query 127 CATCATCGGCGTCTCTGATGGTTTAACCGTTCCTTTTGCCCTCGCCGCCGGTCTCTCCGG 186
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 CATCATCGGTGTCTCCGATGGTTTAACAGTTCCTTTTGCCCTCGCCGCCGGTCTCTCCGG 180
Query 187 TGCCAATGCTTCTTCTTCTATAGTCCTTACCGCTGGAATCGCCGAAGTCGCGGCCGGTGC 246
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 181 TGCCAATGCTTCTTCTTCTATCGTCCTTACCGCCGGAATCGCCGAAGTCGCGGCCGGTGC 240
Query 247 TATCTCCATGGGACTCGGCGGGTATTTAGCGGCAAAGAGCGAAGAAGATCATTACGCGAG 306
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 241 TATCTCCATGGGACTCGGCGGGTATTTAGCGGCAAAGAGTGAAGAGGATCATTACGCGAG 300
Query 307 GGAGATGAAACGAGAACAAGAAGAGATCGTGGCCGTTCCTGAAACTGAGGCAGCTGAAGT 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAGATGAAACGAGAACAAGAAGAGATCGTGGCCGTTCCTGAAACTGAGGCAGCTGAAGT 360
Query 367 GGCAGAGATTCTGGCACAGTACGGGATAGAGCCACATGAATATTCACCTGTAGTTAATGC 426
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 361 GGCAGAGATTCTGGCACAGTATGGGATAGAGCCACATGAATATTCACCTGTGGTTAATGC 420
Query 427 TCTTCGTAAGAATCCTCAAGCTTGGCTTGATTTTATGATGAGGTTTGAGCTGGGATTAGA 486
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 TCTTCGTAAGAATCCTCAAGCTTGGCTTGATTTCATGATGAGGTTTGAGCTGGGATTAGA 480
Query 487 GAAGCCTGATCCAAAAAGAGCGTTACAAAGCGCGTTCACGATTGCAATCGCTTATGTTCT 546
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 GAAGCCTGATCCAAAAAGAGCGTTACAAAGCGCGTTTACGATTGCAATCGCTTATGTTCT 540
Query 547 TGGCGGTTTTATACCGTTACTTCCCTACATGCTCATACCGCATGCCATGGATGCGGTAGT 606
||||||||||||||| ||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 541 TGGCGGTTTTATACCTTTACTTCCCTACATGTTGATACCGCATGCCATAGATGCGGTAGT 600
Query 607 GGCGTCTGTGGTTATAACTCTGTTTGCGCTCTTCATATTTGGCTATGCAAAAGGGCATTT 666
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 601 GGCGTCTGTGGTTATAACTCTGTTCGCTCTCTTCATATTTGGCTATGCAAAAGGGCATTT 660
Query 667 CACTGGAAGCAAGCCCCTCAGAAGTGCGTTTGAAACCGCCTTTATAGGAGCGATTGCTTC 726
||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 661 CACCGGCAGCAAACCCCTTAGAAGTGCGTTTGAAACCGCCTTTATAGGAGCGATTGCCTC 720
Query 727 AGCTGCTGCTTTTTGTTTGGCTAAAGTTGTGCAACATTAGCAG 769
||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGCGGCTGCTTTTTGTTTGGCTAAAGTTGTGCAACATTAGCAG 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28363450248
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5